TCF12 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000005330 T036389_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB

VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914 0.962
TCF12
M04137_2.00
Homo sapiens
VCACSTGB

VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914 0.962
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN

NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914 0.962
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB

VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914 0.962
TCF12
M07806_2.00
Homo sapiens
VCASCTGB

VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914 0.962
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH

DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914 0.962
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH

DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914 0.962
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB

VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914 0.962
TCF12
M09858_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914 0.962
TCF12
M09859_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914 0.962
TCF12
M09860_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914 0.962
TCF12
M09861_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914 0.962
TCF12
M09862_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914 0.962
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN

NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914 0.962
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN

NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914 0.846
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB

VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914 0.846
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB

VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914 0.846
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN

NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912 0.923
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN

NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912 0.923
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN

NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912 0.923
TCF4
M02728_2.00
Homo sapiens
RCACCTG

CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912 0.923
TCF4
M04214_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912 0.923
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB

VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912 0.923
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN

NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912 0.923
TCF4
M04215_2.00
Homo sapiens
VCACCTGN

NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912 0.923
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS

SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886 0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN

NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886 0.923
Tcf3
M09886_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886 0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN

NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886 0.885
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN

NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886 0.885
TCF3
M09791_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886 0.885
TCF3
M09792_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886 0.885
TCF3
M09793_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886 0.885
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB

VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886 0.885
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN

NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000006719 bHLH 421 474

Links

Other bHLH family TFs
Other Oryzias latipes TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30076.m004456 Ricinus communis 30076.m004456 N
AC233899.1_FG002 Zea mays AC233899.1_FG002 N
BHLH96 Arabidopsis thaliana AT1G72210 N
BHLH67 Arabidopsis thaliana AT3G61950 N
BHLH57 Arabidopsis thaliana AT4G01460 N
BGIOSGA005582 Oryza indica BGIOSGA005582 N
BGIOSGA008846 Oryza indica BGIOSGA008846 N
BGIOSGA012015 Oryza indica BGIOSGA012015 N
BGIOSGA017025 Oryza indica BGIOSGA017025 N
BGIOSGA017471 Oryza indica BGIOSGA017471 N
BGIOSGA030936 Oryza indica BGIOSGA030936 N
BGIOSGA032814 Oryza indica BGIOSGA032814 N
Bo2g075510 Brassica oleracea Bo2g075510 N
Bo4g006950 Brassica oleracea Bo4g006950 N
Bo6g092570 Brassica oleracea Bo6g092570 N
Bo6g114730 Brassica oleracea Bo6g114730 N
Bo8g097470 Brassica oleracea Bo8g097470 N
Bo9g004020 Brassica oleracea Bo9g004020 N
Bo9g055890 Brassica oleracea Bo9g055890 N
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N
Bostr.13158s0200 Boechera stricta Bostr.13158s0200 N
Bostr.25993s0085 Boechera stricta Bostr.25993s0085 N
Bostr.7365s0007 Boechera stricta Bostr.7365s0007 N
Bra003886 Brassica rapa Bra003886 N
Bra007644 Brassica rapa Bra007644 N
Bra008017 Brassica rapa Bra008017 N
Bra016080 Brassica rapa Bra016080 N
Bra027958 Brassica rapa Bra027958 N
Bra037414 Brassica rapa Bra037414 N
BRADI1G71990 Brachypodium distachyon BRADI1G71990 N
BRADI3G38510 Brachypodium distachyon BRADI3G38510 N
BRADI3G52150 Brachypodium distachyon BRADI3G52150 N
BRADI3G58360 Brachypodium distachyon BRADI3G58360 N
BRADI4G32650 Brachypodium distachyon BRADI4G32650 N
BRADI5G19950 Brachypodium distachyon BRADI5G19950 N
Cagra.0483s0048 Capsella grandiflora Cagra.0483s0048 N
Cagra.10175s0007 Capsella grandiflora Cagra.10175s0007 N
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N
Carubv10001470m.g Capsella rubella Carubv10001470m.g N
Carubv10018614m.g Capsella rubella Carubv10018614m.g N
Carubv10020657m.g Capsella rubella Carubv10020657m.g N
cassava29786.valid.m1 Manihot esculenta cassava29786.valid.m1 N
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N
cassava34492.m1 Manihot esculenta cassava34492.m1 N
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N
Ca_22410 Cicer arietinum Ca_22410 N
Ca_28086 Cicer arietinum Ca_28086 N
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N
chr3.CM0208.290.nc Lotus japonicus chr3.CM0208.290.nc N
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N
Ciclev10020360m.g Citrus clementina Ciclev10020360m.g N
Ciclev10026131m.g Citrus clementina Ciclev10026131m.g N
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N
Eucgr.H04738 Eucalyptus grandis Eucgr.H04738 N
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N
evm.TU.supercontig_55.64 Carica papaya evm.TU.supercontig_55.64 N
evm.TU.supercontig_57.85 Carica papaya evm.TU.supercontig_57.85 N
F775_11253 Aegilops tauschii F775_11253 N
fgenesh1_pm.C_scaffold_6002861 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002861 N
fgenesh2_kg.5__2692__AT3G61950.1 Arabidopsis lyrata fgenesh2_kg.5__2692__AT3G61950.1 N
gene18608-v1.0-hybrid Fragaria vesca gene18608-v1.0-hybrid N
gene18888-v1.0-hybrid Fragaria vesca gene18888-v1.0-hybrid N
GLYMA02G37313 Glycine max GLYMA02G37313 N
GLYMA07G05500 Glycine max GLYMA07G05500 N
GLYMA14G35560 Glycine max GLYMA14G35560 N
GLYMA16G02020 Glycine max GLYMA16G02020 N
Gorai.005G094800 Gossypium raimondii Gorai.005G094800 N
Gorai.007G113200 Gossypium raimondii Gorai.007G113200 N
Gorai.007G113300 Gossypium raimondii Gorai.007G113300 N
Gorai.007G294800 Gossypium raimondii Gorai.007G294800 N
Gorai.013G204300 Gossypium raimondii Gorai.013G204300 N
GRMZM2G008691 Zea mays GRMZM2G008691 N
GRMZM2G015666 Zea mays GRMZM2G015666 N
GRMZM2G045883 Zea mays GRMZM2G045883 N
GRMZM2G082586 Zea mays GRMZM2G082586 N
GRMZM2G086474 Zea mays GRMZM2G086474 N
GRMZM2G091003 Zea mays GRMZM2G091003 N
GRMZM2G111146 Zea mays GRMZM2G111146 N
GRMZM2G162450 Zea mays GRMZM2G162450 N
GSMUA_Achr10G19180_001 Musa acuminata GSMUA_Achr10G19180_001 N
GSMUA_Achr11G00350_001 Musa acuminata GSMUA_Achr11G00350_001 N
GSMUA_Achr11G23340_001 Musa acuminata GSMUA_Achr11G23340_001 N
GSMUA_Achr2G06030_001 Musa acuminata GSMUA_Achr2G06030_001 N
GSMUA_Achr2G22310_001 Musa acuminata GSMUA_Achr2G22310_001 N
GSMUA_Achr5G05450_001 Musa acuminata GSMUA_Achr5G05450_001 N
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N
GSMUA_Achr8G28400_001 Musa acuminata GSMUA_Achr8G28400_001 N
LPERR02G23260 Leersia perrieri LPERR02G23260 N
LPERR02G27220 Leersia perrieri LPERR02G27220 N
LPERR03G05820 Leersia perrieri LPERR03G05820 N
LPERR04G19210 Leersia perrieri LPERR04G19210 N
LPERR09G09700 Leersia perrieri LPERR09G09700 N
LPERR10G05620 Leersia perrieri LPERR10G05620 N
Lus10010101.g Linum usitatissimum Lus10010101.g N
Lus10012603.g Linum usitatissimum Lus10012603.g N
Lus10015902.g Linum usitatissimum Lus10015902.g N
MLOC_10595 Hordeum vulgare MLOC_10595 N
MLOC_21759 Hordeum vulgare MLOC_21759 N
MLOC_45114 Hordeum vulgare MLOC_45114 N
MLOC_67091 Hordeum vulgare MLOC_67091 N
MLOC_67417 Hordeum vulgare MLOC_67417 N
MTR_1g082480 Medicago truncatula MTR_1g082480 N
MTR_5g064950 Medicago truncatula MTR_5g064950 N
OB02G35790 Oryza brachyantha OB02G35790 N
OB02G40170 Oryza brachyantha OB02G40170 N
OB03G16590 Oryza brachyantha OB03G16590 N
OB04G30380 Oryza brachyantha OB04G30380 N
OB05G34990 Oryza brachyantha OB05G34990 N
OB09G19960 Oryza brachyantha OB09G19960 N
OB10G16200 Oryza brachyantha OB10G16200 N
OBART02G28630 Oryza barthii OBART02G28630 N
OBART02G33270 Oryza barthii OBART02G33270 N
OBART03G06470 Oryza barthii OBART03G06470 N
OBART04G23490 Oryza barthii OBART04G23490 N
OBART05G27490 Oryza barthii OBART05G27490 N
OBART10G08120 Oryza barthii OBART10G08120 N
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N
OGLUM04G23410 Oryza glumaepatula OGLUM04G23410 N
OGLUM05G29000 Oryza glumaepatula OGLUM05G29000 N
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N
OLONG_001045 Oryza longistaminata OLONG_001045 N
OLONG_028191 Oryza longistaminata OLONG_028191 N
OMERI02G31750 Oryza meridionalis OMERI02G31750 N
OMERI03G01350 Oryza meridionalis OMERI03G01350 N
OMERI03G06350 Oryza meridionalis OMERI03G06350 N
OMERI05G23490 Oryza meridionalis OMERI05G23490 N
OMERI09G10430 Oryza meridionalis OMERI09G10430 N
ONIVA02G06380 Oryza nivara ONIVA02G06380 N
ONIVA02G35790 Oryza nivara ONIVA02G35790 N
ONIVA04G03690 Oryza nivara ONIVA04G03690 N
ONIVA04G22720 Oryza nivara ONIVA04G22720 N
ONIVA05G29540 Oryza nivara ONIVA05G29540 N
ONIVA09G13890 Oryza nivara ONIVA09G13890 N
ONIVA10G07810 Oryza nivara ONIVA10G07810 N
OPUNC02G26270 Oryza punctata OPUNC02G26270 N
OPUNC02G30580 Oryza punctata OPUNC02G30580 N
OPUNC03G06240 Oryza punctata OPUNC03G06240 N
OPUNC04G21010 Oryza punctata OPUNC04G21010 N
OPUNC05G25080 Oryza punctata OPUNC05G25080 N
OPUNC09G11790 Oryza punctata OPUNC09G11790 N
OPUNC10G07050 Oryza punctata OPUNC10G07050 N
orange1.1g013752m.g Citrus sinensis orange1.1g013752m.g N
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N
orange1.1g043618m.g Citrus sinensis orange1.1g043618m.g N
ORGLA02G0246400 Oryza glaberrima ORGLA02G0246400 N
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N
ORGLA04G0200200 Oryza glaberrima ORGLA04G0200200 N
ORGLA05G0238800 Oryza glaberrima ORGLA05G0238800 N
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N
ORUFI02G30170 Oryza rufipogon ORUFI02G30170 N
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N
ORUFI04G25160 Oryza rufipogon ORUFI04G25160 N
ORUFI05G29450 Oryza rufipogon ORUFI05G29450 N
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N
OS02G0691500 Oryza sativa OS02G0691500 N
OS03G0188400 Oryza sativa OS03G0188400 N
OS05G0586300 Oryza sativa OS05G0586300 N
OS09G0468700 Oryza sativa OS09G0468700 N
OS10G0376900 Oryza sativa OS10G0376900 N
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N
Pavir.Ab02502 Panicum virgatum Pavir.Ab02502 N
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N
Pavir.Ga00771 Panicum virgatum Pavir.Ga00771 N
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N
Pavir.J03740 Panicum virgatum Pavir.J03740 N
Pavir.J04021 Panicum virgatum Pavir.J04021 N
Pavir.J15346 Panicum virgatum Pavir.J15346 N
Pavir.J22933 Panicum virgatum Pavir.J22933 N
Pavir.J40759 Panicum virgatum Pavir.J40759 N
PGSC0003DMG400016145 Solanum tuberosum PGSC0003DMG400016145 N
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N
Sb0012s004780 Sorghum bicolor Sb0012s004780 N
Sb01g044640 Sorghum bicolor Sb01g044640 N
Sb02g027210 Sorghum bicolor Sb02g027210 N
Sb04g027280 Sorghum bicolor Sb04g027280 N
Sb04g031250 Sorghum bicolor Sb04g031250 N
Sb09g030060 Sorghum bicolor Sb09g030060 N
scaffold_403653.1 Arabidopsis lyrata scaffold_403653.1 N
Si007984m.g Setaria italica Si007984m.g N
Si010485m.g Setaria italica Si010485m.g N
Si017701m.g Setaria italica Si017701m.g N
Si017715m.g Setaria italica Si017715m.g N
Si021834m.g Setaria italica Si021834m.g N
Si036568m.g Setaria italica Si036568m.g N
Si038653m.g Setaria italica Si038653m.g N
Solyc11g010340.1 Solanum lycopersicum Solyc11g010340.1 N
TCM_005028 Theobroma cacao TCM_005028 N
TCM_034439 Theobroma cacao TCM_034439 N
Thhalv10006045m.g Eutrema salsugineum Thhalv10006045m.g N
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N
Thhalv10028815m.g Eutrema salsugineum Thhalv10028815m.g N
Traes_2BL_E58521BDF Triticum aestivum Traes_2BL_E58521BDF N
Traes_4AL_EE88645E2 Triticum aestivum Traes_4AL_EE88645E2 N
Traes_4BL_A48C29364 Triticum aestivum Traes_4BL_A48C29364 N
Traes_4DL_A76BE77E4 Triticum aestivum Traes_4DL_A76BE77E4 N
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N
Traes_6DL_882BC1812 Triticum aestivum Traes_6DL_882BC1812 N
bHLH071 Vitis vinifera VIT_02s0012g01450 N
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N