CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPPYG00000006505
(
Pongo abelii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSPPYG00000006505
T036851_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914
1.000
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914
1.000
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914
1.000
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914
1.000
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914
1.000
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914
1.000
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914
1.000
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914
1.000
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914
1.000
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914
1.000
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914
1.000
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914
1.000
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914
1.000
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914
0.885
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912
0.962
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912
0.962
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912
0.962
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912
0.962
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912
0.962
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912
0.962
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912
0.962
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886
0.962
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886
0.962
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886
0.962
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886
0.923
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000007376
bHLH
602
655
RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Pongo abelii
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NEMVEDRAFT_v1g136480
Nematostella vectensis
NEMVEDRAFT_v1g136480
D
Pax6
Mus musculus
ENSMUSG00000027168
D
ey
Drosophila melanogaster
FBgn0005558
D
CpipJ_CPIJ014198
Culex pipiens
CpipJ_CPIJ014198
I
WUBG_04585
Wuchereria bancrofti
WUBG_04585
I
ACEP15305
Atta cephalotes
ACEP15305
I
ACEP19559
Atta cephalotes
ACEP19559
I
ACYPI067723
Acyrthosiphon pisum
ACYPI067723
I
BGIBMGA009546
Bombyx mori
BGIBMGA009546
I
Bm3369
Brugia malayi
Bm3369
I
CapteG228124
Capitella teleta
CapteG228124
I
CBG04483
Caenorhabditis briggsae
CBG04483
I
CJA11736
Caenorhabditis japonica
CJA11736
I
CPIJ014198
Culex quinquefasciatus
CPIJ014198
I
DAPPUDRAFT_9094
Daphnia pulex
DAPPUDRAFT_9094
I
ENSACAG00000013797
Anolis carolinensis
ENSACAG00000013797
I
ENSAMXG00000010055
Astyanax mexicanus
ENSAMXG00000010055
I
ENSAPLG00000011062
Anas platyrhynchos
ENSAPLG00000011062
I
PAX6
Choloepus hoffmanni
ENSCHOG00000001954
I
pax3/7-like
Ciona intestinalis
ENSCING00000013561
I
ENSCSAVG00000005353
Ciona savignyi
ENSCSAVG00000005353
I
pax10
Danio rerio
ENSDARG00000053364
I
Pax3
Dipodomys ordii
ENSDORG00000010324
I
PAX6
Erinaceus europaeus
ENSEEUG00000014014
I
pax10
Gasterosteus aculeatus
ENSGACG00000007835
I
ENSGMOG00000007260
Gadus morhua
ENSGMOG00000007260
I
ENSLOCG00000017168
Lepisosteus oculatus
ENSLOCG00000017168
I
ENSMGAG00000001533
Meleagris gallopavo
ENSMGAG00000001533
I
ENSMGAG00000004645
Meleagris gallopavo
ENSMGAG00000004645
I
ENSMLUG00000002244
Myotis lucifugus
ENSMLUG00000002244
I
ENSONIG00000020082
Oreochromis niloticus
ENSONIG00000020082
I
ENSPFOG00000004477
Poecilia formosa
ENSPFOG00000004477
I
ENSPFOG00000006769
Poecilia formosa
ENSPFOG00000006769
I
ENSPPYG00000029808
Pongo abelii
ENSPPYG00000029808
I
PAX3
Vicugna pacos
ENSVPAG00000000715
I
ENSXMAG00000017245
Xiphophorus maculatus
ENSXMAG00000017245
I
HMEL012214
Heliconius melpomene
HMEL012214
I
KGM_00017
Danaus plexippus
KGM_00017
I
KGM_18864
Danaus plexippus
KGM_18864
I
LOAG_18403
Loa loa
LOAG_18403
I
LotgiG80560
Lottia gigantea
LotgiG80560
I
MESCA001873
Megaselia scalaris
MESCA001873
I
NEMVEDRAFT_v1g119152
Nematostella vectensis
NEMVEDRAFT_v1g119152
I
PHUM217100
Pediculus humanus
PHUM217100
I
Ppa-ceh-8
Pristionchus pacificus
PPA03443
I
SINV15875
Solenopsis invicta
SINV15875
I
SMAR006838
Strigamia maritima
SMAR006838
I
SPU_006787
Strongylocentrotus purpuratus
SPU_006787
I
WBGene00241133
Onchocerca volvulus
WBGene00241133
I
YQE_05108
Dendroctonus ponderosae
YQE_05108
I
YQE_06850
Dendroctonus ponderosae
YQE_06850
I
YQE_12757
Dendroctonus ponderosae
YQE_12757
I
YQE_12760
Dendroctonus ponderosae
YQE_12760
I
Brh_R002767
Buceros rhinoceros
Brh_R002767
I
Cflo_06474--XP_394848.3_APIME
Camponotus floridanus
Cflo_06474--XP_394848.3_APIME
I
Cmyd_10010531
Chelonia mydas
Cmyd_10010531
I
Tal_R002183
Tyto alba
Tal_R002183
I
Tal_R002397
Tyto alba
Tal_R002397
I
Ocbimv22007835m.g
Octopus bimaculoides
Ocbimv22007835m.g
I
Ocbimv22021713m.g
Octopus bimaculoides
Ocbimv22021713m.g
I
CLEC008732
Cimex lectularius
CLEC008732
I
CLEC009744
Cimex lectularius
CLEC009744
I
HHAL001220-PA
Halyomorpha halys
HHAL001220-PA
I
HHAL002779-PA
Halyomorpha halys
HHAL002779-PA
I
LCUP011798
Lucilia cuprina
LCUP011798
I
LCUP013026
Lucilia cuprina
LCUP013026
I
LCUP015672
Lucilia cuprina
LCUP015672
I
LDEC009603
Leptinotarsa decemlineata
LDEC009603
I
LDEC011614
Leptinotarsa decemlineata
LDEC011614
I
SNAPOd2T00015303001
Oikopleura dioica
SNAPOd2T00015303001
I
XP_002938577
Xenopus tropicalis
XP_002938577
I
AALB001245
Anopheles albimanus
AALB001245
I
AARA005848
Anopheles arabiensis
AARA005848
I
ACHR005004
Anopheles christyi
ACHR005004
I
ACHR007975
Anopheles christyi
ACHR007975
I
ACUA006364
Anopheles culicifacies
ACUA006364
I
ACUA016236
Anopheles culicifacies
ACUA016236
I
ADIR009742
Anopheles dirus
ADIR009742
I
AEPI007688
Anopheles epiroticus
AEPI007688
I
AEPI009864
Anopheles epiroticus
AEPI009864
I
AFAF020744
Anopheles farauti
AFAF020744
I
AFUN002667
Anopheles funestus
AFUN002667
I
AFUN004920
Anopheles funestus
AFUN004920
I
AMAM010839
Anopheles maculatus
AMAM010839
I
AMAM022462
Anopheles maculatus
AMAM022462
I
AMEM005969
Anopheles merus
AMEM005969
I
AMIN006554
Anopheles minimus
AMIN006554
I
AQUA000003
Anopheles quadriannulatus
AQUA000003
I
AQUA006727
Anopheles quadriannulatus
AQUA006727
I
BGLB009051
Biomphalaria glabrata
BGLB009051
I
LLOJ006069
Lutzomyia longipalpis
LLOJ006069
I
PPAI007516
Phlebotomus papatasi
PPAI007516
I
A_06809
Schistosoma haematobium
A_06809
I
ANCCAN_00245
Ancylostoma caninum
ANCCAN_00245
I
ANCCEY_08415
Ancylostoma ceylanicum
ANCCEY_08415
I
ANCDUO_04304
Ancylostoma duodenale
ANCDUO_04304
I
ASU_08111
Ascaris suum
ASU_08111
I
BTMF_0001218901
Brugia timori
BTMF_0001218901
I
CGOC_0000172601
Cylicostephanus goldi
CGOC_0000172601
I
D915_05710
Fasciola hepatica
D915_05710
I
DICVIV_11711
Dictyocaulus viviparus
DICVIV_11711
I
ECPE_0000989001
Echinostoma caproni
ECPE_0000989001
I
EVEC_0000950501
Enterobius vermicularis
EVEC_0000950501
I
GPUH_0000746301
Gongylonema pulchrum
GPUH_0000746301
I
HPLM_0000341801
Haemonchus placei
HPLM_0000341801
I
L889_g29911
Steinernema feltiae
L889_g29911
I
L893_g1042
Steinernema glaseri
L893_g1042
I
L898_g33070
Steinernema monticolum
L898_g33070
I
nAv.1.0.1.g05049
Acanthocheilonema viteae
nAv.1.0.1.g05049
I
NBR_0001845501
Nippostrongylus brasiliensis
NBR_0001845501
I
nDi.2.2.2.g03676
Dirofilaria immitis
nDi.2.2.2.g03676
I
NECAME_04523
Necator americanus
NECAME_04523
I
nLs.2.1.2.g01340
Litomosoides sigmodontis
nLs.2.1.2.g01340
I
nOo.2.0.1.g09807
Onchocerca ochengi
nOo.2.0.1.g09807
I
nRc.2.0.1.g25805
Romanomermis culicivorax
nRc.2.0.1.g25805
I
OESDEN_03125
Oesophagostomum dentatum
OESDEN_03125
I
OFLC_0000197901
Onchocerca flexuosa
OFLC_0000197901
I
SMTD_0001329401
Schistosoma mattheei
SMTD_0001329401
I
SMUV_0001111201
Syphacia muris
SMUV_0001111201
I
SROB_0000988801
Schistosoma rodhaini
SROB_0000988801
I
TCLT_0000211001
Thelazia callipaeda
TCLT_0000211001
I
TELCIR_00312
Teladorsagia circumcincta
TELCIR_00312
I
TRE_0000697601
Trichobilharzia regenti
TRE_0000697601
I
ENSCSAVG00000004794
Ciona savignyi
ENSCSAVG00000004794
I
vab-3
Caenorhabditis elegans
WBGene00006870
I
L596_g12356
Steinernema carpocapsae
L596_g12356
I
PRRX1
Pteropus vampyrus
ENSPVAG00000007390
N
ENSTNIG00000000660
Tetraodon nigroviridis
ENSTNIG00000000660
N
Smp_142440
Schistosoma mansoni
Smp_142440
N
WBGene00247364
Onchocerca volvulus
WBGene00247364
N
A_02894
Schistosoma haematobium
A_02894
N
BTMF_0001220401
Brugia timori
BTMF_0001220401
N
DILT_0000408901
Diphyllobothrium latum
DILT_0000408901
N
EEL_0000119001
Elaeophora elaphi
EEL_0000119001
N
Hba_09393
Heterorhabditis bacteriophora
Hba_09393
N
maker-nMf.1.1.scaf02133-snap-gene-0.11
Meloidogyne floridensis
maker-nMf.1.1.scaf02133-snap-gene-0.11
N
maker-nMf.1.1.scaf03862-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf03862-augustus-gene-0.3
N
nAv.1.0.1.g00204
Acanthocheilonema viteae
nAv.1.0.1.g00204
N
nOo.2.0.1.g04238
Onchocerca ochengi
nOo.2.0.1.g04238
N
nRc.2.0.1.g45424
Romanomermis culicivorax
nRc.2.0.1.g45424
N
OFLC_0001260901
Onchocerca flexuosa
OFLC_0001260901
N
SPER_0001490801
Spirometra erinaceieuropaei
SPER_0001490801
N
SPER_0001521401
Spirometra erinaceieuropaei
SPER_0001521401
N