CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCF12
(
Pan troglodytes
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSPTRG00000007109
T037018_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914
1.000
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914
1.000
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914
1.000
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914
1.000
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914
1.000
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914
1.000
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914
1.000
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914
1.000
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914
1.000
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914
1.000
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914
1.000
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914
1.000
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914
1.000
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914
0.885
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912
0.962
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912
0.962
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912
0.962
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912
0.962
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912
0.962
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912
0.962
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912
0.962
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886
0.962
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886
0.962
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886
0.962
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886
0.923
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000012156
bHLH
602
655
RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Pan troglodytes
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANIA_04562
Aspergillus nidulans
CADANIAG00005876
D
AMAG_08133
Allomyces macrogynus
AMAG_08133
I
AMAG_18789
Allomyces macrogynus
AMAG_18789
I
CIMG_01816
Coccidioides immitis
CIMG_01816
I
MCYG_03346
Microsporum canis
MCYG_03346
I
RO3G_00882
Rhizopus oryzae
RO3G_00882
I
RO3G_07291
Rhizopus oryzae
RO3G_07291
I
RO3G_09518
Rhizopus oryzae
RO3G_09518
I
RO3G_11752
Rhizopus oryzae
RO3G_11752
I
RO3G_13320
Rhizopus oryzae
RO3G_13320
I
SNOG_00166
Stagonospora nodorum
SNOG_00166
I
A1O1_05481
Capronia coronata
A1O1_05481
I
A1O5_02846
Cladophialophora psammophila
A1O5_02846
I
A1O7_06866
Cladophialophora yegresii
A1O7_06866
I
A1O9_01300
Exophiala aquamarina
A1O9_01300
I
AOL_s00079g257
Arthrobotrys oligospora
AOL_s00079g257
I
ARB_03451
Arthroderma benhamiae
ARB_03451
I
BAUCODRAFT_23289
Baudoinia compniacensis
BAUCODRAFT_23289
I
CADAFLAG00007235
Aspergillus flavus
CADAFLAG00007235
I
AFUA_2G02540
Aspergillus fumigatus
CADAFUAG00003598
I
CADANGAG00005877
Aspergillus niger
CADANGAG00005877
I
ATEG_06925
Aspergillus terreus
CADATEAG00003197
I
CANTEDRAFT_114901
Candida tenuis
CANTEDRAFT_114901
I
CFIO01_10839
Colletotrichum fioriniae
CFIO01_10839
I
CH063_04138
Colletotrichum higginsianum
CH063_04138
I
CHGG_06554
Chaetomium globosum
CHGG_06554
I
CMQ_4918
Grosmannia clavigera
CMQ_4918
I
Cob_04988
Colletotrichum orbiculare
Cob_04988
I
COCC4DRAFT_125759
Bipolaris maydis
COCC4DRAFT_125759
I
COCCADRAFT_29461
Bipolaris zeicola
COCCADRAFT_29461
I
COCMIDRAFT_108054
Bipolaris oryzae
COCMIDRAFT_108054
I
COCSADRAFT_86485
Bipolaris sorokiniana
COCSADRAFT_86485
I
COCVIDRAFT_20419
Bipolaris victoriae
COCVIDRAFT_20419
I
COCVIDRAFT_30018
Bipolaris victoriae
COCVIDRAFT_30018
I
CORT_0E05690
Candida orthopsilosis
CORT_0E05690
I
CPC735_046790
Coccidioides posadasii
CPC735_046790
I
CSUB01_03547
Colletotrichum sublineola
CSUB01_03547
I
DOTSEDRAFT_48303
Dothistroma septosporum
DOTSEDRAFT_48303
I
EPUS_07397
Endocarpon pusillum
EPUS_07397
I
EURHEDRAFT_409443
Aspergillus ruber
EURHEDRAFT_409443
I
G647_03229
Cladophialophora carrionii
G647_03229
I
GLOINDRAFT_44500
Rhizophagus irregularis
GLOINDRAFT_44500
I
GLRG_02502
Colletotrichum graminicola
GLRG_02502
I
GMDG_07872
Pseudogymnoascus destructans
GMDG_07872
I
GSTUM_00002563001
Tuber melanosporum
GSTUM_00002563001
I
H101_05542
Trichophyton interdigitale
H101_05542
I
H102_08445
Trichophyton rubrum
H102_08445
I
HMPREF1541_10554
Cyphellophora europaea
HMPREF1541_10554
I
HMPREF1624_04787
Sporothrix schenckii
HMPREF1624_04787
I
LEMA_P113690.1
Leptosphaeria maculans
LEMA_P113690.1
I
M7I_2756
Glarea lozoyensis
M7I_2756
I
MAPG_10727
Magnaporthe poae
MAPG_10727
I
MCYG_03346
Arthroderma otae
MCYG_03346
I
MGYG_00508
Microsporum gypseum
MGYG_00508
I
MYCFIDRAFT_49331
Pseudocercospora fijiensis
MYCFIDRAFT_49331
I
Mycgr3G51498
Zymoseptoria tritici
Mycgr3G51498
I
MYCTH_2298160
Myceliophthora thermophila
MYCTH_2298160
I
OCS_00262
Ophiocordyceps sinensis
OCS_00262
I
OIDMADRAFT_110220
Oidiodendron maius
OIDMADRAFT_110220
I
PAAG_05122
Paracoccidioides sp lutzii
PAAG_05122
I
PABG_04569
Paracoccidioides brasiliensis
PABG_04569
I
PDE_05394
Penicillium oxalicum
PDE_05394
I
PITC_036100
Penicillium italicum
PITC_036100
I
PTRG_07150
Pyrenophora triticirepentis
PTRG_07150
I
PTT_08596
Pyrenophora teres
PTT_08596
I
PV04_07297
Capronia semiimmersa
PV04_07297
I
PV05_09803
Exophiala xenobiotica
PV05_09803
I
PV06_05518
Exophiala oligosperma
PV06_05518
I
PV07_10932
Cladophialophora immunda
PV07_10932
I
PV08_01459
Exophiala spinifera
PV08_01459
I
PV10_06310
Exophiala mesophila
PV10_06310
I
PV11_09617
Exophiala sideris
PV11_09617
I
PVAR5_0698
Byssochlamys spectabilis
PVAR5_0698
I
S40285_07743
Stachybotrys chlorohalonata
S40285_07743
I
S40288_03446
Stachybotrys chartarum
S40288_03446
I
SBOR_5107
Sclerotinia borealis
SBOR_5107
I
SETTUDRAFT_111603
Setosphaeria turcica
SETTUDRAFT_111603
I
SNOG_00166
Phaeosphaeria nodorum
SNOG_00166
I
TEQG_00858
Trichophyton equinum
TEQG_00858
I
TESG_06189
Trichophyton tonsurans
TESG_06189
I
TRV_06106
Trichophyton verrucosum
TRV_06106
I
UCRNP2_115
Neofusicoccum parvum
UCRNP2_115
I
UREG_05510
Uncinocarpus reesii
UREG_05510
I
V499_08520
Pseudogymnoascus pannorum
V499_08520
I
Z517_09948
Fonsecaea pedrosoi
Z517_09948
I
Z518_09068
Rhinocladiella mackenziei
Z518_09068
I
Z519_07376
Cladophialophora bantiana
Z519_07376
I
e_gw1.13.356.1
Mycosphaerella graminicola
e_gw1.13.356.1
I
estExt_Genewise1.C_20182
Mycosphaerella fijiensis
estExt_Genewise1.C_20182
I
estExt_Genewise1Plus.C_40021
Cochliobolus heterostrophus C5
estExt_Genewise1Plus.C_40021
I
fgeneshMC_pg.2_#_504
Mucor circinelloides
fgeneshMC_pg.2_#_504
I
fgeneshMC_pg.5_#_704
Mucor circinelloides
fgeneshMC_pg.5_#_704
I
gw1.2.958.1
Phycomyces blakesleeanus
gw1.2.958.1
I
gw1.4.1798.1
Mucor circinelloides
gw1.4.1798.1
I
gw1.8.779.1
Mucor circinelloides
gw1.8.779.1
I
AB08968.1
Alternaria brassicicola
AB08968.1
I
e_gw1.00771.352.1
Aspergillus carbonarius
e_gw1.00771.352.1
I
RO3G_08687
Rhizopus oryzae
RO3G_08687
N
e_gw1.6.308.1
Phycomyces blakesleeanus
e_gw1.6.308.1
N
e_gw1.9.210.1
Phycomyces blakesleeanus
e_gw1.9.210.1
N
fgeneshMC_pg.8_#_258
Mucor circinelloides
fgeneshMC_pg.8_#_258
N
gw1.26.112.1
Phycomyces blakesleeanus
gw1.26.112.1
N