TCF4 (Pteropus vampyrus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSPVAG00000002074 T037094_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.914 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.914 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.914 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.912 0.962
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.912 0.962
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.912 0.962
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.912 0.962
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.912 0.962
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.912 0.962
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.912 0.962
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.912 0.962
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.912 0.962
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.912 0.962
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.912 0.962
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.912 0.885
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000001962 bHLH 625 678

Links

Other bHLH family TFs
Other Pteropus vampyrus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC212859.3_FG008 Zea mays AC212859.3_FG008 N
BGIOSGA022108 Oryza indica BGIOSGA022108 I
BGIOSGA027804 Oryza indica BGIOSGA027804 N
BGIOSGA027807 Oryza indica BGIOSGA027807 N
Bo7g065010 Brassica oleracea Bo7g065010 I
Bostr.0568s0042 Boechera stricta Bostr.0568s0042 I
Bra012065 Brassica rapa Bra012065 I
BRADI3G13117 Brachypodium distachyon BRADI3G13117 N
BRADI5G27467 Brachypodium distachyon BRADI5G27467 N
Cagra.10427s0040 Capsella grandiflora Cagra.10427s0040 I
Carubv10026898m.g Capsella rubella Carubv10026898m.g I
Ca_01981 Cicer arietinum Ca_01981 I
e_gw1.70.85.1 Physcomitrella patens e_gw1.70.85.1 N
F775_00942 Aegilops tauschii F775_00942 N
F775_12735 Aegilops tauschii F775_12735 N
F775_16517 Aegilops tauschii F775_16517 N
F775_52611 Aegilops tauschii F775_52611 N
ANAC105 Arabidopsis lyrata fgenesh2_kg.8__2792__AT5G66300.1 I
GLYMA01G37310 Glycine max GLYMA01G37310 I
GLYMA11G07990 Glycine max GLYMA11G07990 I
Gorai.003G169000 Gossypium raimondii Gorai.003G169000 I
Gorai.007G048000 Gossypium raimondii Gorai.007G048000 I
GRMZM2G041668 Zea mays GRMZM2G041668 I
GRMZM2G048826 Zea mays GRMZM2G048826 N
GRMZM2G178998 Zea mays GRMZM2G178998 I
GRMZM2G440219 Zea mays GRMZM2G440219 I
GSMUA_Achr11G17510_001 Musa acuminata GSMUA_Achr11G17510_001 I
GSMUA_Achr3G22360_001 Musa acuminata GSMUA_Achr3G22360_001 N
GSMUA_Achr7G06640_001 Musa acuminata GSMUA_Achr7G06640_001 I
LPERR08G00380 Leersia perrieri LPERR08G00380 N
MLOC_19933 Hordeum vulgare MLOC_19933 N
MLOC_66083 Hordeum vulgare MLOC_66083 N
MLOC_67250 Hordeum vulgare MLOC_67250 N
MTR_5g021710 Medicago truncatula MTR_5g021710 I
OB06G10310 Oryza brachyantha OB06G10310 I
OB08G10370 Oryza brachyantha OB08G10370 N
OBART06G00240 Oryza barthii OBART06G00240 I
OGLUM06G00210 Oryza glumaepatula OGLUM06G00210 I
OGLUM08G00350 Oryza glumaepatula OGLUM08G00350 N
OMERI06G00230 Oryza meridionalis OMERI06G00230 I
OMERI08G00600 Oryza meridionalis OMERI08G00600 N
ONIVA06G00260 Oryza nivara ONIVA06G00260 I
ONIVA08G00280 Oryza nivara ONIVA08G00280 N
OPUNC06G00220 Oryza punctata OPUNC06G00220 I
OPUNC08G00360 Oryza punctata OPUNC08G00360 N
ORGLA06G0002300 Oryza glaberrima ORGLA06G0002300 I
ORUFI06G00250 Oryza rufipogon ORUFI06G00250 I
ORUFI08G00330 Oryza rufipogon ORUFI08G00330 N
OS06G0104200 Oryza sativa OS06G0104200 I
OS08G0103900 Oryza sativa OS08G0103900 N
Pavir.Da02426 Panicum virgatum Pavir.Da02426 I
Pavir.Gb00744 Panicum virgatum Pavir.Gb00744 I
Pavir.J07126 Panicum virgatum Pavir.J07126 I
Pavir.J20890 Panicum virgatum Pavir.J20890 N
Pavir.J26987 Panicum virgatum Pavir.J26987 I
Pavir.J31179 Panicum virgatum Pavir.J31179 N
POPTR_0007s13910 Populus trichocarpa POPTR_0007s13910 I
Sb06g023780 Sorghum bicolor Sb06g023780 I
Sb06g034010 Sorghum bicolor Sb06g034010 N
Sb07g000470 Sorghum bicolor Sb07g000470 N
Sb10g000460 Sorghum bicolor Sb10g000460 I
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I
Si006829m.g Setaria italica Si006829m.g I
Si010504m.g Setaria italica Si010504m.g I
Si014149m.g Setaria italica Si014149m.g N
Si022723m.g Setaria italica Si022723m.g I
Thhalv10005380m.g Eutrema salsugineum Thhalv10005380m.g I
Traes_2AL_8EE7F34F6 Triticum aestivum Traes_2AL_8EE7F34F6 N
Traes_2AL_C0670BBDD Triticum aestivum Traes_2AL_C0670BBDD N
Traes_2AL_CB84F42D2 Triticum aestivum Traes_2AL_CB84F42D2 N
Traes_2AL_F001B4F26 Triticum aestivum Traes_2AL_F001B4F26 N
Traes_2BL_0AED4E377 Triticum aestivum Traes_2BL_0AED4E377 N
Traes_2BL_CBFB7D720 Triticum aestivum Traes_2BL_CBFB7D720 N
Traes_2DL_607AD3522 Triticum aestivum Traes_2DL_607AD3522 N
Traes_7DL_DF64397D7 Triticum aestivum Traes_7DL_DF64397D7 N
TRIUR3_06372 Triticum urartu TRIUR3_06372 N
TRIUR3_10969 Triticum urartu TRIUR3_10969 N
TRIUR3_24878 Triticum urartu TRIUR3_24878 N