CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSHAG00000015935
(
Sarcophilus harrisii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSSHAG00000015935
T037367_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914
1.000
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914
1.000
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914
1.000
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914
1.000
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914
1.000
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914
1.000
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914
1.000
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914
1.000
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914
1.000
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914
1.000
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914
1.000
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914
1.000
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914
1.000
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914
1.000
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914
0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914
0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914
0.885
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912
0.962
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912
0.962
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912
0.962
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912
0.962
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912
0.962
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912
0.962
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912
0.962
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912
0.962
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886
0.962
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886
0.962
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886
0.962
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886
0.923
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSHAP00000018774
bHLH
578
631
RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLE
Links
Other
bHLH
family TFs
Other
Sarcophilus harrisii
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NCU02819
Neurospora crassa
NCU02819
D
CpipJ_CPIJ020011
Culex pipiens
CpipJ_CPIJ020011
I
VDBG_04589
Verticillium albo atrum
VDBG_04589
I
AAEL011425
Aedes aegypti
AAEL011425
I
ACEP16595
Atta cephalotes
ACEP16595
I
ACRE_011600
Acremonium chrysogenum
ACRE_011600
I
CapteG172235
Capitella teleta
CapteG172235
I
CBN25379
Caenorhabditis brenneri
CBN25379
I
CFIO01_13531
Colletotrichum fioriniae
CFIO01_13531
I
CGGC5_9539
Colletotrichum gloeosporioides
CGGC5_9539
I
CH063_04081
Colletotrichum higginsianum
CH063_04081
I
CPIJ020011
Culex quinquefasciatus
CPIJ020011
I
CPUR_04901
Claviceps purpurea
CPUR_04901
I
CSUB01_00364
Colletotrichum sublineola
CSUB01_00364
I
ssrp1a
Danio rerio
ENSDARG00000037397
I
HmgZ
Drosophila melanogaster
FBgn0010228
I
HmgZ
Drosophila yakuba
FBgn0068145
I
GA14726
Drosophila pseudoobscura
FBgn0074753
I
GF11622
Drosophila ananassae
FBgn0088662
I
GG20749
Drosophila erecta
FBgn0112936
I
GH20784
Drosophila grimshawi
FBgn0128247
I
GI20867
Drosophila mojavensis
FBgn0143601
I
GL17523
Drosophila persimilis
FBgn0155126
I
GM15692
Drosophila sechellia
FBgn0170608
I
GD25171
Drosophila simulans
FBgn0196483
I
GJ20604
Drosophila virilis
FBgn0207743
I
GK15658
Drosophila willistoni
FBgn0217663
I
FFUJ_02729
Fusarium fujikuroi
FFUJ_02729
I
GLRG_01394
Colletotrichum graminicola
GLRG_01394
I
KGM_13852
Danaus plexippus
KGM_13852
I
MAJ_04030
Metarhizium majus
MAJ_04030
I
MANI_030028
Metarhizium anisopliae
MANI_030028
I
MBR_01483
Metarhizium brunneum
MBR_01483
I
MCINX001064
Melitaea cinxia
MCINX001064
I
MGG_01641
Magnaporthe oryzae
MGG_01641
I
MGU_02157
Metarhizium guizhouense
MGU_02157
I
MYCTH_2294934
Myceliophthora thermophila
MYCTH_2294934
I
NEUTE1DRAFT_106544
Neurospora tetrasperma
NEUTE1DRAFT_106544
I
OSTLU_31946
Ostreococcus lucimarinus
OSTLU_31946
I
PODANS_1_7390
Podospora anserina
PODANS_1_7390
I
RPRC006380
Rhodnius prolixus
RPRC006380
I
S40288_09735
Stachybotrys chartarum
S40288_09735
I
SMAC_00615
Sordaria macrospora
SMAC_00615
I
TCM_007659
Theobroma cacao
TCM_007659
I
THITE_2121767
Thielavia terrestris
THITE_2121767
I
TriadG64155
Trichoplax adhaerens
TriadG64155
I
VDAG_04140
Verticillium dahliae
VDAG_04140
I
VDAG_09161
Verticillium dahliae
VDAG_09161
I
VDBG_04589
Verticillium alfalfae
VDBG_04589
I
HMGB6
Vitis vinifera
VIT_10s0071g00870
I
X797_001988
Metarhizium robertsii
X797_001988
I
estExt_fgenesh1_pg.C_2230007
Physcomitrella patens
estExt_fgenesh1_pg.C_2230007
I
estExt_fgenesh3_kg.C_40082
Neurospora discreta
estExt_fgenesh3_kg.C_40082
I
CLEC003860
Cimex lectularius
CLEC003860
I
MDOA014797
Musca domestica
MDOA014797
I
PPAI002522
Phlebotomus papatasi
PPAI002522
I
ANCCAN_08230
Ancylostoma caninum
ANCCAN_08230
I
ANCCAN_12424
Ancylostoma caninum
ANCCAN_12424
I
ANCCAN_17708
Ancylostoma caninum
ANCCAN_17708
I
ANCCAN_21638
Ancylostoma caninum
ANCCAN_21638
I
ANCDUO_11856
Ancylostoma duodenale
ANCDUO_11856
I
ANCDUO_24920
Ancylostoma duodenale
ANCDUO_24920
I
BXY_1081800
Bursaphelenchus xylophilus
BXY_1081800
I
BXY_1081900
Bursaphelenchus xylophilus
BXY_1081900
I
Hba_18326
Heterorhabditis bacteriophora
Hba_18326
I
HPBE_0002408301
Heligmosomoides bakeri
HPBE_0002408301
I
CpipJ_CPIJ002952
Culex pipiens
CpipJ_CPIJ002952
N
CpipJ_CPIJ002953
Culex pipiens
CpipJ_CPIJ002953
N
AAEL002381
Aedes aegypti
AAEL002381
N
AAEL011414
Aedes aegypti
AAEL011414
N
ADAC005122
Anopheles darlingi
ADAC005122
N
AGAP012334
Anopheles gambiae
AGAP012334
N
BGIBMGA005288
Bombyx mori
BGIBMGA005288
N
BGIBMGA007393
Bombyx mori
BGIBMGA007393
N
CBG04066
Caenorhabditis briggsae
CBG04066
N
CBG09136
Caenorhabditis briggsae
CBG09136
N
CPIJ002952
Culex quinquefasciatus
CPIJ002952
N
CPIJ002953
Culex quinquefasciatus
CPIJ002953
N
CRE03995
Caenorhabditis remanei
CRE03995
N
CRE11852
Caenorhabditis remanei
CRE11852
N
DAPPUDRAFT_201206
Daphnia pulex
DAPPUDRAFT_201206
N
EHI_045480
Entamoeba histolytica
EHI_045480
N
ENSAMXG00000014826
Astyanax mexicanus
ENSAMXG00000014826
N
HmgD
Drosophila melanogaster
FBgn0004362
N
Ssrp
Drosophila melanogaster
FBgn0010278
N
HmgD
Drosophila yakuba
FBgn0068146
N
Ssrp
Drosophila pseudoobscura
FBgn0078456
N
GF12460
Drosophila ananassae
FBgn0089497
N
GF13265
Drosophila ananassae
FBgn0090297
N
GG19998
Drosophila erecta
FBgn0112197
N
GG22136
Drosophila erecta
FBgn0114310
N
GH21124
Drosophila grimshawi
FBgn0128586
N
GH21151
Drosophila grimshawi
FBgn0128613
N
GI18728
Drosophila mojavensis
FBgn0141467
N
GI18750
Drosophila mojavensis
FBgn0141489
N
GL11071
Drosophila persimilis
FBgn0148681
N
GL16947
Drosophila persimilis
FBgn0154551
N
GM13209
Drosophila sechellia
FBgn0168140
N
GM15859
Drosophila sechellia
FBgn0170775
N
GD11622
Drosophila simulans
FBgn0183362
N
GD25013
Drosophila simulans
FBgn0196325
N
GJ21748
Drosophila virilis
FBgn0208866
N
GJ21774
Drosophila virilis
FBgn0208892
N
GK15924
Drosophila willistoni
FBgn0217926
N
GK22092
Drosophila willistoni
FBgn0224077
N
GE11532
Drosophila yakuba
FBgn0229332
N
GA30453
Drosophila pseudoobscura
FBgn0264590
N
GB54571
Apis mellifera
GB54571
N
HMEL015307
Heliconius melpomene
HMEL015307
N
KGM_13851
Danaus plexippus
KGM_13851
N
L798_13679
Zootermopsis nevadensis
L798_13679
N
LotgiG207546
Lottia gigantea
LotgiG207546
N
ML09221a
Mnemiopsis leidyi
ML09221a
N
NEMVEDRAFT_v1g59568
Nematostella vectensis
NEMVEDRAFT_v1g59568
N
NV15871
Nasonia vitripennis
NV15871
N
OSTLU_18991
Ostreococcus lucimarinus
OSTLU_18991
N
Smp_148930
Schistosoma mansoni
Smp_148930
N
TC012866
Tribolium castaneum
TC012866
N
hmg-1.1
Caenorhabditis elegans
WBGene00001971
N
hmg-4
Caenorhabditis elegans
WBGene00001974
N
YQE_02071
Dendroctonus ponderosae
YQE_02071
N
EDI_049480
Entamoeba dispar
EDI_049480
N
Cflo_11824--XP_001120264.1_APIME
Camponotus floridanus
Cflo_11824--XP_001120264.1_APIME
N
Hsal_00538--XP_001120264.1_APIME
Harpegnathos saltator
Hsal_00538--XP_001120264.1_APIME
N
estExt_fgeneshMC_pm.C_110016
Mucor circinelloides
estExt_fgeneshMC_pm.C_110016
N
LCUP016801
Lucilia cuprina
LCUP016801
N
LDEC020995
Leptinotarsa decemlineata
LDEC020995
N
Sjc_0035580
Schistosoma japonicum
Sjc_0035580
N
Minc03634
Meloidogyne incognita
Minc03634
N
Minc04648
Meloidogyne incognita
Minc04648
N
AALB010797
Anopheles albimanus
AALB010797
N
AARA003413
Anopheles arabiensis
AARA003413
N
ACHR003270
Anopheles christyi
ACHR003270
N
ACOM026236
Anopheles coluzzii
ACOM026236
N
ADIR000495
Anopheles dirus
ADIR000495
N
AEPI002535
Anopheles epiroticus
AEPI002535
N
AFUN009599
Anopheles funestus
AFUN009599
N
AMAM007083
Anopheles maculatus
AMAM007083
N
AMEC017787
Anopheles melas
AMEC017787
N
AQUA002990
Anopheles quadriannulatus
AQUA002990
N
ASIS014204
Anopheles sinensis
ASIS014204
N
MDOA007633
Musca domestica
MDOA007633
N
MDOA009531
Musca domestica
MDOA009531
N
PPAI002521
Phlebotomus papatasi
PPAI002521
N
A_01848
Schistosoma haematobium
A_01848
N
ACAC_0000817201
Angiostrongylus cantonensis
ACAC_0000817201
N
ANCCEY_04224
Ancylostoma ceylanicum
ANCCEY_04224
N
ANCDUO_10137
Ancylostoma duodenale
ANCDUO_10137
N
ANCDUO_12352
Ancylostoma duodenale
ANCDUO_12352
N
ASU_05994
Ascaris suum
ASU_05994
N
DME_0000779601
Dracunculus medinensis
DME_0000779601
N
ECANG7_00770
Echinococcus canadensis
ECANG7_00770
N
EmuJ_000894800
Echinococcus multilocularis
EmuJ_000894800
N
HCOI01420700
Haemonchus contortus
HCOI01420700
N
HCOI01550200
Haemonchus contortus
HCOI01550200
N
HCOI02106600
Haemonchus contortus
HCOI02106600
N
HDID_0000239001
Hymenolepis diminuta
HDID_0000239001
N
HmN_000028000
Hymenolepis microstoma
HmN_000028000
N
HPLM_0001324601
Haemonchus placei
HPLM_0001324601
N
L596_g28088
Steinernema carpocapsae
L596_g28088
N
L889_g29516
Steinernema feltiae
L889_g29516
N
L889_g9094
Steinernema feltiae
L889_g9094
N
L892_g19058
Steinernema scapterisci
L892_g19058
N
L893_g29974
Steinernema glaseri
L893_g29974
N
L898_g4830
Steinernema monticolum
L898_g4830
N
maker-nMf.1.1.scaf04887-augustus-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf04887-augustus-gene-0.6
N
MhA1_Contig400.frz3.gene18
Meloidogyne hapla
MhA1_Contig400.frz3.gene18
N
NBR_0000004401
Nippostrongylus brasiliensis
NBR_0000004401
N
NBR_0001277401
Nippostrongylus brasiliensis
NBR_0001277401
N
NECAME_16525
Necator americanus
NECAME_16525
N
OESDEN_09619
Oesophagostomum dentatum
OESDEN_09619
N
PTRK_0000111400
Parastrongyloides trichosuri
PTRK_0000111400
N
PTRK_0001161700
Parastrongyloides trichosuri
PTRK_0001161700
N
PTRK_0001490800
Parastrongyloides trichosuri
PTRK_0001490800
N
RSKR_0000587700
Rhabditophanes kr3021
RSKR_0000587700
N
RSKR_0000733200
Rhabditophanes kr3021
RSKR_0000733200
N
SCUD_0000070901
Schistosoma curassoni
SCUD_0000070901
N
SMTD_0001155301
Schistosoma mattheei
SMTD_0001155301
N
SPAL_0000986100
Strongyloides papillosus
SPAL_0000986100
N
SPAL_0001085700
Strongyloides papillosus
SPAL_0001085700
N
SPAL_0001421900
Strongyloides papillosus
SPAL_0001421900
N
SSLN_0000125101
Schistocephalus solidus
SSLN_0000125101
N
SSTP_0000585600
Strongyloides stercoralis
SSTP_0000585600
N
SSTP_0000790100
Strongyloides stercoralis
SSTP_0000790100
N
SSTP_0001024100
Strongyloides stercoralis
SSTP_0001024100
N
SVE_0294800
Strongyloides venezuelensis
SVE_0294800
N
SVE_0536900
Strongyloides venezuelensis
SVE_0536900
N
SVE_0954900
Strongyloides venezuelensis
SVE_0954900
N
SVUK_0001798101
Strongylus vulgaris
SVUK_0001798101
N
TASK_0000475801
Taenia asiatica
TASK_0000475801
N
TCNE_0001025901
Toxocara canis
TCNE_0001025901
N
TELCIR_02603
Teladorsagia circumcincta
TELCIR_02603
N
TsM_000111500
Taenia solium
TsM_000111500
N
TTAC_0000692101
Hydatigera taeniaeformis
TTAC_0000692101
N