TCF4 (Sus scrofa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSSCG00000004535 T037399_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.847 1.000
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.914 1.000
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.914 1.000
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.914 1.000
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.847 1.000
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.914 1.000
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.847 1.000
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.847 1.000
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.845 0.953
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.845 0.953
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.845 0.953
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.912 0.962
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.845 0.953
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.845 0.953
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.845 0.953
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.845 0.953
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.845 0.953
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.845 0.953
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.845 0.953
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.845 0.953
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.912 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.912 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.845 0.907
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.884 0.923
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.884 0.923
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.884 0.923
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.884 0.885
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.884 0.885
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.884 0.885
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.884 0.885
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.884 0.885
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.884 0.885
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000004889 bHLH 382 435
ENSSSCP00000030136 bHLH 409 462
ENSSSCP00000030707 bHLH 409 453

Links

Other bHLH family TFs
Other Sus scrofa TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01165 Capronia coronata A1O1_01165 I
A1O3_08745 Capronia epimyces A1O3_08745 I
A1O5_00463 Cladophialophora psammophila A1O5_00463 I
A1O7_01320 Cladophialophora yegresii A1O7_01320 I
A1O9_00176 Exophiala aquamarina A1O9_00176 I
AB00812.1 Alternaria brassicicola AB00812.1 I
ACRE_039490 Acremonium chrysogenum ACRE_039490 I
AGABI2DRAFT_177253 Agaricus bisporus AGABI2DRAFT_177253 I
AMAG_00738 Allomyces macrogynus AMAG_00738 I
AMAG_02241 Allomyces macrogynus AMAG_02241 I
AMAG_17764 Allomyces macrogynus AMAG_17764 I
AOL_s00075g211 Arthrobotrys oligospora AOL_s00075g211 I
AUEXF2481DRAFT_721 Aureobasidium subglaciale AUEXF2481DRAFT_721 I
BAUCODRAFT_64949 Baudoinia compniacensis BAUCODRAFT_64949 I
BBA_06064 Beauveria bassiana BBA_06064 I
BBA_09441 Beauveria bassiana BBA_09441 I
BBA_09560 Beauveria bassiana BBA_09560 I
BBA_10233 Beauveria bassiana BBA_10233 I
BBA_10253 Beauveria bassiana BBA_10253 I
Bcin14g03930 Botrytis cinerea Bcin14g03930 I
BDDG_01688 Blastomyces dermatitidis BDDG_01688 I
BGHDH14_bgh03088 Blumeria graminis BGHDH14_bgh03088 I
BN946_scf184754.g8 Trametes cinnabarina BN946_scf184754.g8 I
BOTBODRAFT_149615 Botryobasidium botryosum BOTBODRAFT_149615 I
ACLA_041500 Aspergillus clavatus CADACLAG00003643 I
CADAFLAG00003906 Aspergillus flavus CADAFLAG00003906 I
AFUA_3G13870 Aspergillus fumigatus CADAFUAG00005882 I
CADANGAG00002477 Aspergillus niger CADANGAG00002477 I
nsdD Aspergillus nidulans CADANIAG00009919 I
CADAORAG00006305 Aspergillus oryzae CADAORAG00006305 I
ATEG_04043 Aspergillus terreus CADATEAG00009213 I
NFIA_063400 Neosartorya fischeri CADNFIAG00005846 I
CANTEDRAFT_91588 Candida tenuis CANTEDRAFT_91588 I
CCM_00560 Cordyceps militaris CCM_00560 I
CERSUDRAFT_117427 Ceriporiopsis subvermispora CERSUDRAFT_117427 I
CFIO01_13220 Colletotrichum fioriniae CFIO01_13220 I
CGGC5_6860 Colletotrichum gloeosporioides CGGC5_6860 I
CH063_11622 Colletotrichum higginsianum CH063_11622 I
CIMG_00087 Coccidioides immitis CIMG_00087 I
COCSADRAFT_262372 Bipolaris sorokiniana COCSADRAFT_262372 I
CPC735_060480 Coccidioides posadasii CPC735_060480 I
CSUB01_03231 Colletotrichum sublineola CSUB01_03231 I
CTHT_0052380 Chaetomium thermophilum CTHT_0052380 I
DACRYDRAFT_47643 Dacryopinax sp DACRYDRAFT_47643 I
DEHA2F25916g Debaryomyces hansenii DEHA2F25916g I
DOTSEDRAFT_68310 Dothistroma septosporum DOTSEDRAFT_68310 I
DRE_04106 Drechslerella stenobrocha DRE_04106 I
EDP42063.1 Malassezia globosa EDP42063.1 I
EPUS_00825 Endocarpon pusillum EPUS_00825 I
estExt_fgenesh1_pg.C_10665 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10665 I
estExt_fgenesh1_pg.C_chr_11429 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_11429 I
estExt_fgenesh1_pm.C_10224 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_10224 I
estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 Nectria haematococca estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 I
estExt_fgenesh3_kg.C_140077 Neurospora discreta estExt_fgenesh3_kg.C_140077 I
estExt_fgeneshMC_kg.C_30209 Mucor circinelloides estExt_fgeneshMC_kg.C_30209 I
estExt_fgeneshMC_kg.C_30237 Mucor circinelloides estExt_fgeneshMC_kg.C_30237 I
estExt_fgeneshMC_pg.C_50482 Mucor circinelloides estExt_fgeneshMC_pg.C_50482 I
estExt_fgeneshPB_pg.C_70124 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_70124 I
estExt_Genewise1Plus.C_70696 Cryphonectria parasitica estExt_Genewise1Plus.C_70696 I
EuGene17000025 Heterobasidion annosum EuGene17000025 I
EURHEDRAFT_464468 Aspergillus ruber EURHEDRAFT_464468 I
EV44_g2708 Erysiphe necator EV44_g2708 I
F503_08730 Ophiostoma piceae uamh F503_08730 I
FFUJ_07383 Fusarium fujikuroi FFUJ_07383 I
fgenesh1_pg.00866_#_575 Aspergillus carbonarius fgenesh1_pg.00866_#_575 I
fgenesh1_pg.C_scaffold_4000132 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000132 I
fgenesh1_pg.sca_83_unmapped000003 Nectria haematococca fgenesh1_pg.sca_83_unmapped000003 I
fgeneshPB_pg.14__263 Phycomyces blakesleeanus fgeneshPB_pg.14__263 I
FGRRES_17300 Fusarium graminearum FGRRES_17300 I
FIBRA_03562 Fibroporia radiculosa FIBRA_03562 I
FOMPIDRAFT_133363 Fomitopsis pinicola FOMPIDRAFT_133363 I
FOXG_05342 Fusarium oxysporum FOXG_05342 I
FOXG_14975 Fusarium oxysporum FOXG_14975 I
G647_01386 Cladophialophora carrionii G647_01386 I
GALMADRAFT_118587 Galerina marginata GALMADRAFT_118587 I
GGTG_07031 Gaeumannomyces graminis GGTG_07031 I
GLOINDRAFT_349729 Rhizophagus irregularis GLOINDRAFT_349729 I
GLOTRDRAFT_140412 Gloeophyllum trabeum GLOTRDRAFT_140412 I
GLRG_03333 Colletotrichum graminicola GLRG_03333 I
GMDG_08277 Pseudogymnoascus destructans GMDG_08277 I
GNLVRS01_PISO0M06766g Millerozyma farinosa GNLVRS01_PISO0M06766g I
GYMLUDRAFT_48090 Gymnopus luxurians GYMLUDRAFT_48090 I
H072_763 Dactylellina haptotyla H072_763 I
H101_07383 Trichophyton interdigitale H101_07383 I
H102_08281 Trichophyton rubrum H102_08281 I
H105_08310 Trichophyton soudanense H105_08310 I
HCBG_05204 Histoplasma capsulatum HCBG_05204 I
HETIRDRAFT_247589 Heterobasidion irregulare HETIRDRAFT_247589 I
HMPREF1120_00248 Exophiala dermatitidis HMPREF1120_00248 I
HMPREF1541_06379 Cyphellophora europaea HMPREF1541_06379 I
HMPREF1624_00018 Sporothrix schenckii HMPREF1624_00018 I
HYDPIDRAFT_30042 Hydnomerulius pinastri HYDPIDRAFT_30042 I
JAAARDRAFT_72689 Jaapia argillacea JAAARDRAFT_72689 I
K443DRAFT_142600 Laccaria amethystina K443DRAFT_142600 I
LACBIDRAFT_297200 Laccaria bicolor LACBIDRAFT_297200 I
LEMA_P078810.1 Leptosphaeria maculans LEMA_P078810.1 I
M378DRAFT_170228 Amanita muscaria M378DRAFT_170228 I
M404DRAFT_991532 Pisolithus tinctorius M404DRAFT_991532 I
M437DRAFT_55951 Aureobasidium melanogenum M437DRAFT_55951 I
M438DRAFT_352549 Aureobasidium pullulans M438DRAFT_352549 I
MAC_01133 Metarhizium acridum MAC_01133 I
MAJ_03944 Metarhizium majus MAJ_03944 I
MAM_07861 Metarhizium album MAM_07861 I
MANI_023659 Metarhizium anisopliae MANI_023659 I
MAPG_05772 Magnaporthe poae MAPG_05772 I
MBM_02208 Marssonina brunnea MBM_02208 N
MBR_01569 Metarhizium brunneum MBR_01569 I
MCYG_00112 Microsporum canis MCYG_00112 I
MCYG_00112 Arthroderma otae MCYG_00112 I
MGG_07319 Magnaporthe oryzae MGG_07319 I
MGU_02247 Metarhizium guizhouense MGU_02247 I
MGYG_00673 Microsporum gypseum MGYG_00673 I
Moror_3883 Moniliophthora roreri Moror_3883 I
MPER_15845 Moniliophthora perniciosa MPER_15845 I
MPH_02070 Macrophomina phaseolina MPH_02070 I
MYCFIDRAFT_85908 Pseudocercospora fijiensis MYCFIDRAFT_85908 I
Mycgr3G107643 Zymoseptoria tritici Mycgr3G107643 I
NCAS_0D01260 Naumovozyma castellii NCAS_0D01260 I
sub-1 Neurospora crassa NCU01154 D
NechaG104418 Fusarium solani NechaG104418 I
NechaG88991 Fusarium solani NechaG88991 I
NEUTE1DRAFT_127702 Neurospora tetrasperma NEUTE1DRAFT_127702 I
OCS_03409 Ophiocordyceps sinensis OCS_03409 I
OIDMADRAFT_154229 Oidiodendron maius OIDMADRAFT_154229 I
PAAG_05818 Paracoccidioides sp lutzii PAAG_05818 I
PABG_05830 Paracoccidioides brasiliensis PABG_05830 I
PAN0_015c5180 Pseudozyma antarctica PAN0_015c5180 I
PAXINDRAFT_134989 Paxillus involutus PAXINDRAFT_134989 I
PAXRUDRAFT_92867 Paxillus rubicundulus PAXRUDRAFT_92867 I
Pc13g15350 Penicillium chrysogenum Pc13g15350 I
Pc21g03670 Penicillium chrysogenum Pc21g03670 I
PCH_Pc13g15350 Penicillium rubens PCH_Pc13g15350 I
PCH_Pc21g03670 Penicillium rubens PCH_Pc21g03670 I
PDE_02029 Penicillium oxalicum PDE_02029 I
PDIP_24050 Penicillium digitatum PDIP_24050 I
PEX1_036690 Penicillium expansum PEX1_036690 I
PFICI_13402 Pestalotiopsis fici PFICI_13402 I
PFL1_04652 Pseudozyma flocculosa PFL1_04652 I
PHACADRAFT_252970 Phanerochaete carnosa PHACADRAFT_252970 I
PHLGIDRAFT_130107 Phlebiopsis gigantea PHLGIDRAFT_130107 I
PHSY_002311 Pseudozyma hubeiensis PHSY_002311 I
PIIN_03483 Piriformospora indica PIIN_03483 I
PIIN_05533 Piriformospora indica PIIN_05533 I
PILCRDRAFT_817785 Piloderma croceum PILCRDRAFT_817785 I
PISMIDRAFT_27336 Pisolithus microcarpus PISMIDRAFT_27336 I
PITC_039600 Penicillium italicum PITC_039600 I
PLEOSDRAFT_1094410 Pleurotus ostreatus PLEOSDRAFT_1094410 I
PLICRDRAFT_701268 Plicaturopsis crispa PLICRDRAFT_701268 I
PMAA_019060 Talaromyces marneffei PMAA_019060 I
PMAA_019060 Penicillium marneffei PMAA_019060 I
PODANS_2_1880 Podospora anserina PODANS_2_1880 I
PSEUBRA_SCAF18g04670 Pseudozyma brasiliensis PSEUBRA_SCAF18g04670 I
PTT_12856 Pyrenophora teres PTT_12856 I
PV04_00647 Capronia semiimmersa PV04_00647 I
PV05_01900 Exophiala xenobiotica PV05_01900 I
PV06_06115 Exophiala oligosperma PV06_06115 I
PV07_05919 Cladophialophora immunda PV07_05919 I
PV08_04845 Exophiala spinifera PV08_04845 I
PV09_05321 Verruconis gallopava PV09_05321 I
PV10_02392 Exophiala mesophila PV10_02392 I
PV11_10134 Exophiala sideris PV11_10134 I
PVAR5_3263 Byssochlamys spectabilis PVAR5_3263 I
RO3G_03309 Rhizopus oryzae RO3G_03309 I
RO3G_15967 Rhizopus oryzae RO3G_15967 I
S40285_04108 Stachybotrys chlorohalonata S40285_04108 I
S40288_07636 Stachybotrys chartarum S40288_07636 I
SBOR_2773 Sclerotinia borealis SBOR_2773 I
SCHCODRAFT_108660 Schizophyllum commune SCHCODRAFT_108660 I
SCLCIDRAFT_10458 Scleroderma citrinum SCLCIDRAFT_10458 I
SEPMUDRAFT_78069 Sphaerulina musiva SEPMUDRAFT_78069 I
SERLA73DRAFT_160841 Serpula lacrymans SERLA73DRAFT_160841 I
SMAC_03223 Sordaria macrospora SMAC_03223 I
SNOG_10431 Stagonospora nodorum SNOG_10431 I
TEQG_01014 Trichophyton equinum TEQG_01014 I
TESG_04545 Trichophyton tonsurans TESG_04545 I
THITE_2106568 Thielavia terrestris THITE_2106568 I
TRIATDRAFT_258818 Trichoderma atroviride TRIATDRAFT_258818 I
TRIREDRAFT_57735 Trichoderma reesei TRIREDRAFT_57735 I
TRIVIDRAFT_214458 Trichoderma virens TRIVIDRAFT_214458 I
TSTA_027060 Talaromyces stipitatus TSTA_027060 I
U727_00433161111 Penicillium solitum U727_00433161111 I
UHOR_07508 Ustilago hordei UHOR_07508 I
UM05773 Ustilago maydis UM05773 I
V499_02833 Pseudogymnoascus pannorum V499_02833 I
V565_084370 Rhizoctonia solani V565_084370 I
VDBG_00527 Verticillium albo atrum VDBG_00527 I
VDBG_00527 Verticillium alfalfae VDBG_00527 I
VHEMI08657 Torrubiella hemipterigena VHEMI08657 I
W97_08308 Coniosporium apollinis W97_08308 I
X797_002080 Metarhizium robertsii X797_002080 I
Z517_07105 Fonsecaea pedrosoi Z517_07105 I
Z518_02217 Rhinocladiella mackenziei Z518_02217 I
Z519_00470 Cladophialophora bantiana Z519_00470 I
ZBAI_04886 Zygosaccharomyces bailii ZBAI_04886 N
ZBAI_06445 Zygosaccharomyces bailii ZBAI_06445 N
ZYRO0A08536g Zygosaccharomyces rouxii ZYRO0A08536g N