ENSXMAG00000011968 (Xiphophorus maculatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSXMAG00000011968 T038152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tfap4
M01717_2.00
Mus musculus
VHCABVYGB

VCRBVTGDB
PBM
Weirauch et al.(2014)
pTH5067
0.912 0.942
TFAP4
M02776_2.00
Homo sapiens
AWCAGCTGWY

RWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_1
0.912 0.942
TFAP4
M02777_2.00
Homo sapiens
AWCAGCTGWT

AWCAGCTGWT
SELEX
Jolma et al.(2013)
TFAP4_2
0.912 0.942
TFAP4
M04066_2.00
Homo sapiens
VHCAKVTGDB

VHCABMTGDB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_1
0.912 0.942
TFAP4
M04067_2.00
Homo sapiens
VWCAGCTGWB

VWCAGCTGWB
SELEX
Yin et al.(2017)
TFAP4_eDBD_HT-SELEX_2
0.912 0.942
TFAP4
M04070_2.00
Homo sapiens
RHCAYVTGDB

VHCABRTGDY
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_1
0.912 0.942
TFAP4
M04071_2.00
Homo sapiens
VHCAGCTGDB

VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_HT-SELEX_2
0.912 0.942
TFAP4
M08712_2.00
Homo sapiens
VMNCAGCTGR

YCAGCTGNKB
Misc
Kulakovskiy et al.(2013)
TFAP4_HUMAN.H11MO.0.A
0.912 0.942
TFAP4
M09453_2.00
Homo sapiens
NVHCAGCTGD

HCAGCTGDBN
Misc
Heinz et al.(2010)
AML-Tfap4_GSE45738
0.912 0.942
TFAP4
M09802_2.00
Homo sapiens
MNGNCHVCAGCTGDBBBW

WVVVHCAGCTGBDGNCNK
Transfac
Matys et al.(2006)
V$AP4_01
0.912 0.942
TFAP4
M09803_2.00
Homo sapiens
NNSAGCTGHB

VDCAGCTSNN
Transfac
Matys et al.(2006)
V$AP4_Q5
0.912 0.942
TFAP4
M09804_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_01
0.912 0.942
TFAP4
M09805_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AP4_Q6_02
0.912 0.942
TFAP4
M09806_2.00
Homo sapiens
NVCAGCTGHB

VDCAGCTGBN
Transfac
Matys et al.(2006)
V$AP4_Q6
0.912 0.942
TFAP4
M04068_2.00
Homo sapiens
DHCABMTGDN

NHCAKVTGDH
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_1
0.912 0.942
TFAP4
M04069_2.00
Homo sapiens
AWCAGCTGWT

AWCAGCTGWT
SELEX
Yin et al.(2017)
TFAP4_eDBD_Methyl-HT-SELEX_2
0.912 0.942
TFAP4
M04072_2.00
Homo sapiens
VHCABVTGDB

VHCABVTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_1
0.912 0.942
TFAP4
M04073_2.00
Homo sapiens
VHCAGCTGDB

VHCAGCTGDB
SELEX
Yin et al.(2017)
TFAP4_FL_Methyl-HT-SELEX_2
0.912 0.942
crp
M03595_2.00
Drosophila melanogaster
AACAGCTGWT

AWCAGCTGTT
SELEX
Nitta et al.(2015)
crp_1
0.845 0.827
crp
M05937_2.00
Drosophila melanogaster
VAHCAGCTGAY

RTCAGCTGDWB
B1H
Zhu et al.(2011)
crp_SANGER_10_FBgn0001994
0.845 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000011995 bHLH 49 100

Links

Other bHLH family TFs
Other Xiphophorus maculatus TFs

100 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29904.m002956 Ricinus communis 29904.m002956 N
30054.m000819 Ricinus communis 30054.m000819 N
30128.m008737 Ricinus communis 30128.m008737 N
AMTR_s00001p00272070 Amborella trichopoda AMTR_s00001p00272070 N
AMTR_s00008p00198780 Amborella trichopoda AMTR_s00008p00198780 N
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N
Aquca_010_00112 Aquilegia coerulea Aquca_010_00112 N
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N
AT1G22490 Arabidopsis thaliana AT1G22490 N
BGIOSGA012015 Oryza indica BGIOSGA012015 N
BGIOSGA026779 Oryza indica BGIOSGA026779 N
BGIOSGA030936 Oryza indica BGIOSGA030936 N
BHLH96 Arabidopsis thaliana AT1G72210 N
Bo1g101110 Brassica oleracea Bo1g101110 N
Bo3g082010 Brassica oleracea Bo3g082010 N
Bo5g038570 Brassica oleracea Bo5g038570 N
Bo6g092570 Brassica oleracea Bo6g092570 N
Bo7g037540 Brassica oleracea Bo7g037540 N
Bo7g057920 Brassica oleracea Bo7g057920 N
Bo8g071490 Brassica oleracea Bo8g071490 N
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N
Bra001929 Brassica rapa Bra001929 N
Bra003886 Brassica rapa Bra003886 N
Bra012329 Brassica rapa Bra012329 N
Bra016080 Brassica rapa Bra016080 N
Bra016377 Brassica rapa Bra016377 N
Bra028357 Brassica rapa Bra028357 N
Bra040856 Brassica rapa Bra040856 N
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N
Carubv10011476m.g Capsella rubella Carubv10011476m.g N
Carubv10013821m.g Capsella rubella Carubv10013821m.g N
Carubv10020657m.g Capsella rubella Carubv10020657m.g N
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N
cassava27750.m1 Manihot esculenta cassava27750.m1 N
cassava27856.m1 Manihot esculenta cassava27856.m1 N
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N
Ca_01181 Cicer arietinum Ca_01181 N
Ca_12363 Cicer arietinum Ca_12363 N
Ca_16010 Cicer arietinum Ca_16010 N
Ca_28086 Cicer arietinum Ca_28086 N
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N
Cla005338 Citrullus lanatus Cla005338 N
Cla020173 Citrullus lanatus Cla020173 N
Cla021744 Citrullus lanatus Cla021744 N
Cla022458 Citrullus lanatus Cla022458 N
Cucsa.091670 Cucumis sativus Cucsa.091670 N
Cucsa.160250 Cucumis sativus Cucsa.160250 N
Cucsa.163550 Cucumis sativus Cucsa.163550 N
Cucsa.256420 Cucumis sativus Cucsa.256420 N
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N
FAMA Arabidopsis thaliana AT3G24140 N
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N
FMA Arabidopsis lyrata scaffold_302925.1 N
FMA Vitis vinifera VIT_05s0029g00050 N
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N
GLYMA01G23230 Glycine max GLYMA01G23230 N
GLYMA02G14290 Glycine max GLYMA02G14290 N
GLYMA02G37313 Glycine max GLYMA02G37313 N
GLYMA03G39990 Glycine max GLYMA03G39990 N
GLYMA04G10630 Glycine max GLYMA04G10630 N
GLYMA06G10470 Glycine max GLYMA06G10470 N
GLYMA06G35330 Glycine max GLYMA06G35330 N
GLYMA08G36590 Glycine max GLYMA08G36590 N
GLYMA10G29760 Glycine max GLYMA10G29760 N
GLYMA13G08740 Glycine max GLYMA13G08740 N
GLYMA14G35560 Glycine max GLYMA14G35560 N
GLYMA19G42520 Glycine max GLYMA19G42520 N
GLYMA20G37550 Glycine max GLYMA20G37550 N
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N
Gorai.009G233000 Gossypium raimondii Gorai.009G233000 N
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N
GRMZM2G082586 Zea mays GRMZM2G082586 N
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N
GSMUA_Achr3G06660_001 Musa acuminata GSMUA_Achr3G06660_001 N
GSMUA_Achr5G05450_001 Musa acuminata GSMUA_Achr5G05450_001 N
GSMUA_Achr5G17900_001 Musa acuminata GSMUA_Achr5G17900_001 N
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N
LPERR03G05820 Leersia perrieri LPERR03G05820 N
LPERR08G15350 Leersia perrieri LPERR08G15350 N
Lus10000332.g Linum usitatissimum Lus10000332.g N
Lus10016680.g Linum usitatissimum Lus10016680.g N
Lus10029950.g Linum usitatissimum Lus10029950.g N
MDP0000229007 Malus domestica MDP0000229007 N
MDP0000267178 Malus domestica MDP0000267178 N
MDP0000646823 Malus domestica MDP0000646823 N
MDP0000672131 Malus domestica MDP0000672131 N
MDP0000944210 Malus domestica MDP0000944210 N
mgf015694m Mimulus guttatus mgf015694m N
MLOC_21759 Hordeum vulgare MLOC_21759 N
MLOC_67417 Hordeum vulgare MLOC_67417 N
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N
MTR_3g099620 Medicago truncatula MTR_3g099620 N
MTR_7g113830 Medicago truncatula MTR_7g113830 N
MTR_8g066770 Medicago truncatula MTR_8g066770 N
OB08G25610 Oryza brachyantha OB08G25610 N
OB09G19960 Oryza brachyantha OB09G19960 N
OBART03G06470 Oryza barthii OBART03G06470 N
OBART08G18480 Oryza barthii OBART08G18480 N
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N
OGLUM08G19420 Oryza glumaepatula OGLUM08G19420 N
OLONG_001045 Oryza longistaminata OLONG_001045 N
OMERI03G06350 Oryza meridionalis OMERI03G06350 N
OMERI09G10430 Oryza meridionalis OMERI09G10430 N
ONIVA02G06380 Oryza nivara ONIVA02G06380 N
ONIVA08G20580 Oryza nivara ONIVA08G20580 N
ONIVA09G13890 Oryza nivara ONIVA09G13890 N
OPUNC08G16410 Oryza punctata OPUNC08G16410 N
OPUNC09G11790 Oryza punctata OPUNC09G11790 N
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N
ORGLA08G0160400 Oryza glaberrima ORGLA08G0160400 N
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N
ORUFI08G20670 Oryza rufipogon ORUFI08G20670 N
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N
OS03G0188400 Oryza sativa OS03G0188400 N
OS08G0483900 Oryza sativa OS08G0483900 N
OS09G0468700 Oryza sativa OS09G0468700 N
Pavir.Ba01963 Panicum virgatum Pavir.Ba01963 N
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N
Pavir.Fb01787 Panicum virgatum Pavir.Fb01787 N
Pavir.J22933 Panicum virgatum Pavir.J22933 N
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N
PK04856.1 Cannabis sativa PK04856.1 N
PK14736.1 Cannabis sativa PK14736.1 N
PK18533.1 Cannabis sativa PK18533.1 N
PK21294.1 Cannabis sativa PK21294.1 N
PK28391.1 Cannabis sativa PK28391.1 N
Pm002111 Prunus mume Pm002111 N
Pm003380 Prunus mume Pm003380 N
Pm004489 Prunus mume Pm004489 N
Pm009474 Prunus mume Pm009474 N
Pm023207 Prunus mume Pm023207 N
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N
POPTR_0003s09200 Populus trichocarpa POPTR_0003s09200 N
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N
PRUPE_ppa020862mg Prunus persica PRUPE_ppa020862mg N
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N
Sb02g027210 Sorghum bicolor Sb02g027210 N
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N
Si013925m.g Setaria italica Si013925m.g N
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N
TCM_015694 Theobroma cacao TCM_015694 N
TCM_020336 Theobroma cacao TCM_020336 N
TCM_026599 Theobroma cacao TCM_026599 N
TCM_034439 Theobroma cacao TCM_034439 N
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N
TRIUR3_09788 Triticum urartu TRIUR3_09788 N
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N