CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_kg.1__235__AT1G03040.1
(
Arabidopsis lyrata
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
fgenesh2_kg.1__235__AT1G03040.1
T039105_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.1__235__AT1G03040.1
bHLH
157
204
DPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLR
Links
Other
bHLH
family TFs
Other
Arabidopsis lyrata
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT1G03040
Arabidopsis thaliana
AT1G03040
N
0.914
UNE12
Arabidopsis thaliana
AT4G02590
N
0.914
Bo01031s030
Brassica oleracea
Bo01031s030
N
0.914
Bo2g100750
Brassica oleracea
Bo2g100750
N
0.914
Bo5g003580
Brassica oleracea
Bo5g003580
N
0.914
Bo9g005930
Brassica oleracea
Bo9g005930
N
0.914
Bra000872
Brassica rapa
Bra000872
N
0.914
Bra018539
Brassica rapa
Bra018539
N
0.914
Bra033368
Brassica rapa
Bra033368
N
0.914
Bra036256
Brassica rapa
Bra036256
N
0.914
UNE12
Arabidopsis lyrata
fgenesh2_kg.6__3435__AT4G02590.2
N
0.914
Bostr.2983s0202
Boechera stricta
Bostr.2983s0202
N
0.914
Cagra.0635s0023
Capsella grandiflora
Cagra.0635s0023
N
0.914
Cagra.0897s0074
Capsella grandiflora
Cagra.0897s0074
N
0.914
Carubv10001523m.g
Capsella rubella
Carubv10001523m.g
N
0.914
Carubv10009831m.g
Capsella rubella
Carubv10009831m.g
N
0.914
Thhalv10008279m.g
Eutrema salsugineum
Thhalv10008279m.g
N
0.914
Thhalv10028824m.g
Eutrema salsugineum
Thhalv10028824m.g
N
0.914
29598.m000464
Ricinus communis
29598.m000464
N
0.902
cassava18573.valid.m1
Manihot esculenta
cassava18573.valid.m1
N
0.902
Lus10006587.g
Linum usitatissimum
Lus10006587.g
N
0.902
Lus10015909.g
Linum usitatissimum
Lus10015909.g
N
0.902
cassava22704.valid.m1
Manihot esculenta
cassava22704.valid.m1
N
0.890
GLYMA02G16110
Glycine max
GLYMA02G16110
N
0.884
GLYMA03G31510
Glycine max
GLYMA03G31510
N
0.884
GLYMA10G03690
Glycine max
GLYMA10G03690
N
0.884
GLYMA19G34360
Glycine max
GLYMA19G34360
N
0.884
MTR_1g070870
Medicago truncatula
MTR_1g070870
N
0.884
POPTR_0002s04620
Populus trichocarpa
POPTR_0002s04620
N
0.884
TCM_004217
Theobroma cacao
TCM_004217
N
0.884
VIT_07s0141g00220
Vitis vinifera
VIT_07s0141g00220
N
0.884
Ca_07790
Cicer arietinum
Ca_07790
N
0.884
Ca_12194
Cicer arietinum
Ca_12194
N
0.884
Cla015040
Citrullus lanatus
Cla015040
N
0.884
29883.m001988
Ricinus communis
29883.m001988
N
0.884
cassava36725.valid.m1
Manihot esculenta
cassava36725.valid.m1
N
0.884
Cucsa.388780
Cucumis sativus
Cucsa.388780
N
0.884
Ciclev10021443m.g
Citrus clementina
Ciclev10021443m.g
N
0.884
Eucgr.B01487
Eucalyptus grandis
Eucgr.B01487
N
0.884
Gorai.001G242500
Gossypium raimondii
Gorai.001G242500
N
0.884
Gorai.007G141800
Gossypium raimondii
Gorai.007G141800
N
0.884
orange1.1g022649m.g
Citrus sinensis
orange1.1g022649m.g
N
0.884
SapurV1A.0006s1290
Salix purpurea
SapurV1A.0006s1290
N
0.884
PK25419.1
Cannabis sativa
PK25419.1
N
0.884
chr1.CM0375.380.nc
Lotus japonicus
chr1.CM0375.380.nc
N
0.884
POPTR_0005s05500
Populus trichocarpa
POPTR_0005s05500
N
0.878
SapurV1A.0729s0150
Salix purpurea
SapurV1A.0729s0150
N
0.878
GSMUA_Achr4G21070_001
Musa acuminata
GSMUA_Achr4G21070_001
I
0.873
GSMUA_Achr5G03100_001
Musa acuminata
GSMUA_Achr5G03100_001
I
0.873
PGSC0003DMG400006089
Solanum tuberosum
PGSC0003DMG400006089
N
0.873
PGSC0003DMG400013393
Solanum tuberosum
PGSC0003DMG400013393
N
0.873
PRUPE_ppa009299mg
Prunus persica
PRUPE_ppa009299mg
N
0.873
Solyc09g083220.2
Solanum lycopersicum
Solyc09g083220.2
N
0.873
Pm020229
Prunus mume
Pm020229
N
0.873
gene08188-v1.0-hybrid
Fragaria vesca
gene08188-v1.0-hybrid
N
0.873
MDP0000176749
Malus domestica
MDP0000176749
N
0.873
GLYMA10G30430
Glycine max
GLYMA10G30430
N
0.872
GLYMA20G36770
Glycine max
GLYMA20G36770
N
0.872
MTR_1g080890
Medicago truncatula
MTR_1g080890
N
0.872
PRUPE_ppa008172mg
Prunus persica
PRUPE_ppa008172mg
N
0.872
TCM_026346
Theobroma cacao
TCM_026346
N
0.872
VIT_05s0020g04620
Vitis vinifera
VIT_05s0020g04620
N
0.872
VIT_14s0030g02230
Vitis vinifera
VIT_14s0030g02230
N
0.872
Ca_03755
Cicer arietinum
Ca_03755
N
0.872
Cla011475
Citrullus lanatus
Cla011475
N
0.872
Pm003525
Prunus mume
Pm003525
N
0.872
Cucsa.289090
Cucumis sativus
Cucsa.289090
N
0.872
Aquca_017_00590
Aquilegia coerulea
Aquca_017_00590
N
0.872
Eucgr.H04337
Eucalyptus grandis
Eucgr.H04337
N
0.872
evm.TU.supercontig_117.94
Carica papaya
evm.TU.supercontig_117.94
N
0.872
gene16564-v1.0-hybrid
Fragaria vesca
gene16564-v1.0-hybrid
N
0.872
Gorai.007G277200
Gossypium raimondii
Gorai.007G277200
N
0.872
MDP0000295593
Malus domestica
MDP0000295593
N
0.872
PK20184.1
Cannabis sativa
PK20184.1
N
0.872
Solyc03g005350.2
Solanum lycopersicum
Solyc03g005350.2
N
0.870
BGIOSGA013729
Oryza indica
BGIOSGA013729
I
0.861
BGIOSGA025266
Oryza indica
BGIOSGA025266
I
0.861
BRADI1G05430
Brachypodium distachyon
BRADI1G05430
I
0.861
BRADI1G55427
Brachypodium distachyon
BRADI1G55427
I
0.861
GRMZM2G004356
Zea mays
GRMZM2G004356
I
0.861
GRMZM2G162382
Zea mays
GRMZM2G162382
I
0.861
GSMUA_Achr9G25560_001
Musa acuminata
GSMUA_Achr9G25560_001
I
0.861
LPERR03G31640
Leersia perrieri
LPERR03G31640
I
0.861
LPERR07G04600
Leersia perrieri
LPERR07G04600
I
0.861
OB07G13990
Oryza brachyantha
OB07G13990
I
0.861
OBART03G37400
Oryza barthii
OBART03G37400
I
0.861
OBART07G05280
Oryza barthii
OBART07G05280
I
0.861
OGLUM03G37150
Oryza glumaepatula
OGLUM03G37150
I
0.861
OGLUM07G04790
Oryza glumaepatula
OGLUM07G04790
I
0.861
OLONG_014165
Oryza longistaminata
OLONG_014165
I
0.861
OMERI03G34570
Oryza meridionalis
OMERI03G34570
I
0.861
OMERI05G15760
Oryza meridionalis
OMERI05G15760
I
0.861
ONIVA03G38760
Oryza nivara
ONIVA03G38760
I
0.861
ONIVA07G04020
Oryza nivara
ONIVA07G04020
I
0.861
OPUNC03G34510
Oryza punctata
OPUNC03G34510
I
0.861
OPUNC07G05040
Oryza punctata
OPUNC07G05040
I
0.861
ORGLA06G0244900
Oryza glaberrima
ORGLA06G0244900
I
0.861
ORGLA07G0044500
Oryza glaberrima
ORGLA07G0044500
I
0.861
ORUFI07G05060
Oryza rufipogon
ORUFI07G05060
I
0.861
OS03G0797600
Oryza sativa
OS03G0797600
I
0.861
Sb02g004570
Sorghum bicolor
Sb02g004570
I
0.861
Si030704m.g
Setaria italica
Si030704m.g
I
0.861
Si036929m.g
Setaria italica
Si036929m.g
I
0.861
Pavir.Ba03672
Panicum virgatum
Pavir.Ba03672
I
0.861
Pavir.J00283
Panicum virgatum
Pavir.J00283
I
0.861
Pavir.J03221
Panicum virgatum
Pavir.J03221
I
0.861
Pavir.J04249
Panicum virgatum
Pavir.J04249
I
0.861
chr5.LjT29J15.30.nc
Lotus japonicus
chr5.LjT29J15.30.nc
N
0.859
PGSC0003DMG400019334
Solanum tuberosum
PGSC0003DMG400019334
N
0.858
POPTR_0005s23930
Populus trichocarpa
POPTR_0005s23930
N
0.858
Solyc09g065820.2
Solanum lycopersicum
Solyc09g065820.2
N
0.858
Gorai.004G075200
Gossypium raimondii
Gorai.004G075200
N
0.858
Gorai.004G218900
Gossypium raimondii
Gorai.004G218900
N
0.858
SapurV1A.0860s0050
Salix purpurea
SapurV1A.0860s0050
N
0.858
SapurV1A.0110s0180
Salix purpurea
SapurV1A.0110s0180
N
0.854
Ciclev10001768m.g
Citrus clementina
Ciclev10001768m.g
N
0.852
evm.TU.supercontig_52.97
Carica papaya
evm.TU.supercontig_52.97
N
0.849
Lus10002720.g
Linum usitatissimum
Lus10002720.g
N
0.849
Lus10014726.g
Linum usitatissimum
Lus10014726.g
N
0.849
Lus10018761.g
Linum usitatissimum
Lus10018761.g
N
0.849
mgf001465m
Mimulus guttatus
mgf001465m
N
0.846