fgenesh2_kg.8__1059__AT5G51780.1 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 fgenesh2_kg.8__1059__AT5G51780.1 T039167_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G25400
M09786_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G25400_01 		0.893 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.8__1059__AT5G51780.1 bHLH 2 54

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G51780 Arabidopsis thaliana AT5G51780 I 0.914
Bo7g110280 Brassica oleracea Bo7g110280 I 0.914
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.914
Bra019167 Brassica rapa Bra019167 I 0.902
Thhalv10009922m.g Eutrema salsugineum Thhalv10009922m.g I 0.901
POPTR_0012s14080 Populus trichocarpa POPTR_0012s14080 I 0.894
cassava43207.valid.m1 Manihot esculenta cassava43207.valid.m1 I 0.894
Bostr.15774s0324 Boechera stricta Bostr.15774s0324 I 0.894
Cagra.0277s0021 Capsella grandiflora Cagra.0277s0021 I 0.894
Carubv10027166m.g Capsella rubella Carubv10027166m.g I 0.894
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.893
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.893
Bra022562 Brassica rapa Bra022562 I 0.890
Solyc06g035490.2 Solanum lycopersicum Solyc06g035490.2 I 0.883
Pm019419 Prunus mume Pm019419 I 0.882
MDP0000246258 Malus domestica MDP0000246258 I 0.882
LjSGA_023375.1 Lotus japonicus LjSGA_023375.1 I 0.882
cassava45968.m1 Manihot esculenta cassava45968.m1 I 0.881
Bo2g048240 Brassica oleracea Bo2g048240 I 0.879
GLYMA09G27610 Glycine max GLYMA09G27610 I 0.871
GLYMA16G32610 Glycine max GLYMA16G32610 I 0.871
Ca_22233 Cicer arietinum Ca_22233 I 0.871
Bostr.13671s0206 Boechera stricta Bostr.13671s0206 I 0.871
PK11667.1 Cannabis sativa PK11667.1 I 0.871
PK15358.1 Cannabis sativa PK15358.1 I 0.871
cassava21379.m1 Manihot esculenta cassava21379.m1 I 0.870
Ciclev10006628m.g Citrus clementina Ciclev10006628m.g I 0.870
orange1.1g036406m.g Citrus sinensis orange1.1g036406m.g I 0.870
Thhalv10015297m.g Eutrema salsugineum Thhalv10015297m.g I 0.867
TCM_016133 Theobroma cacao TCM_016133 I 0.866
TCM_016134 Theobroma cacao TCM_016134 I 0.866
Gorai.006G196500 Gossypium raimondii Gorai.006G196500 I 0.860
GLYMA09G27630 Glycine max GLYMA09G27630 N 0.859
MTR_0007s0380 Medicago truncatula MTR_0007s0380 N 0.859
MTR_1g102370 Medicago truncatula MTR_1g102370 N 0.858
30147.m014147 Ricinus communis 30147.m014147 N 0.858
Ciclev10006639m.g Citrus clementina Ciclev10006639m.g N 0.858
Cucsa.302590 Cucumis sativus Cucsa.302590 N 0.855
Aquca_013_00494 Aquilegia coerulea Aquca_013_00494 N 0.851
Cagra.0568s0165 Capsella grandiflora Cagra.0568s0165 N 0.851
Carubv10011792m.g Capsella rubella Carubv10011792m.g N 0.851
BHLH125 Arabidopsis thaliana AT1G62975 I 0.850
fgenesh2_kg.2__186__AT1G62975.1 Arabidopsis lyrata fgenesh2_kg.2__186__AT1G62975.1 I 0.850
Bostr.22157s0026 Boechera stricta Bostr.22157s0026 I 0.850
Cagra.1670s0006 Capsella grandiflora Cagra.1670s0006 I 0.850
Carubv10020804m.g Capsella rubella Carubv10020804m.g I 0.850
Bo9g103560 Brassica oleracea Bo9g103560 N 0.849
GLYMA16G32620 Glycine max GLYMA16G32620 N 0.848
Cagra.2248s0016 Capsella grandiflora Cagra.2248s0016 I 0.845
Carubv10006264m.g Capsella rubella Carubv10006264m.g I 0.845
Lus10027394.g Linum usitatissimum Lus10027394.g N 0.842
MTR_0007s0330 Medicago truncatula MTR_0007s0330 N 0.841