CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GB43632
(
Apis mellifera
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
GB43632
T039361_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Fer3
M05993_2.00
Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC
B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937
0.890
0.962
FERD3L
M04140_2.00
Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1
0.890
0.885
FERD3L
M04141_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2
0.890
0.885
FERD3L
M04142_2.00
Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1
0.890
0.885
FERD3L
M04143_2.00
Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2
0.890
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GB43632-PA
bHLH
96
148
QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIAFMG
Links
Other
bHLH
family TFs
Other
Apis mellifera
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G019060
Zea mays
GRMZM2G019060
N
GRMZM2G132794
Zea mays
GRMZM2G132794
N
GRMZM2G172657
Zea mays
GRMZM2G172657
N
GSMUA_Achr4G16460_001
Musa acuminata
GSMUA_Achr4G16460_001
N
LPERR07G17740
Leersia perrieri
LPERR07G17740
N
MLOC_62665
Hordeum vulgare
MLOC_62665
N
OB07G26110
Oryza brachyantha
OB07G26110
N
OGLUM03G23190
Oryza glumaepatula
OGLUM03G23190
N
OGLUM07G20210
Oryza glumaepatula
OGLUM07G20210
N
ONIVA03G24000
Oryza nivara
ONIVA03G24000
N
ONIVA07G18840
Oryza nivara
ONIVA07G18840
N
OPUNC03G21050
Oryza punctata
OPUNC03G21050
N
OPUNC07G19280
Oryza punctata
OPUNC07G19280
N
ORGLA03G0208800
Oryza glaberrima
ORGLA03G0208800
N
ORGLA07G0156800
Oryza glaberrima
ORGLA07G0156800
N
ORUFI03G23130
Oryza rufipogon
ORUFI03G23130
N
ORUFI07G21310
Oryza rufipogon
ORUFI07G21310
N
Pavir.Bb01182
Panicum virgatum
Pavir.Bb01182
N
Pavir.Ib01878
Panicum virgatum
Pavir.Ib01878
N
Sb02g037890
Sorghum bicolor
Sb02g037890
N
SHR1
Oryza sativa
OS07G0586900
N
SHR1
Oryza indica
BGIOSGA026037
N
SHR2
Oryza sativa
OS03G0433200
N
SHR2
Oryza indica
BGIOSGA010480
N
Traes_2AS_D0B21BF981
Triticum aestivum
Traes_2AS_D0B21BF981
N
Traes_2BS_736EF207B1
Triticum aestivum
Traes_2BS_736EF207B1
N