CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ONIVA03G27180
(
Oryza nivara
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ONIVA03G27180
T042624_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ONIVA03G27180.1
bHLH
234
277
LYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQ
Links
Other
bHLH
family TFs
Other
Oryza nivara
TFs
207 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA010239
Oryza indica
BGIOSGA010239
N
0.914
LPERR03G21650
Leersia perrieri
LPERR03G21650
N
0.914
OB03G34210
Oryza brachyantha
OB03G34210
N
0.914
OBART03G26170
Oryza barthii
OBART03G26170
N
0.914
OGLUM03G27050
Oryza glumaepatula
OGLUM03G27050
N
0.914
OLONG_010636
Oryza longistaminata
OLONG_010636
N
0.914
OMERI03G23570
Oryza meridionalis
OMERI03G23570
N
0.914
OPUNC03G23870
Oryza punctata
OPUNC03G23870
N
0.914
ORGLA03G0242600
Oryza glaberrima
ORGLA03G0242600
N
0.914
ORUFI03G27070
Oryza rufipogon
ORUFI03G27070
N
0.914
AMTR_s00164p00062120
Amborella trichopoda
AMTR_s00164p00062120
N
0.903
AT2G14760
Arabidopsis thaliana
AT2G14760
N
0.903
BHLH85
Arabidopsis thaliana
AT4G33880
N
0.903
BGIOSGA023988
Oryza indica
BGIOSGA023988
N
0.903
BGIOSGA035917
Oryza indica
BGIOSGA035917
N
0.903
Bo1g007780
Brassica oleracea
Bo1g007780
N
0.903
Bo3g169400
Brassica oleracea
Bo3g169400
N
0.903
Bo7g116460
Brassica oleracea
Bo7g116460
N
0.903
Bra011476
Brassica rapa
Bra011476
N
0.903
Bra034587
Brassica rapa
Bra034587
N
0.903
Bra036969
Brassica rapa
Bra036969
N
0.903
BRADI1G14600
Brachypodium distachyon
BRADI1G14600
N
0.903
BRADI4G03070
Brachypodium distachyon
BRADI4G03070
N
0.903
F775_02582
Aegilops tauschii
F775_02582
N
0.903
RSL2
Arabidopsis lyrata
fgenesh2_kg.7__724__AT4G33880.1
N
0.903
GLYMA10G40350
Glycine max
GLYMA10G40350
N
0.903
GLYMA10G40360
Glycine max
GLYMA10G40360
N
0.903
GLYMA14G09781
Glycine max
GLYMA14G09781
N
0.903
GLYMA17G35423
Glycine max
GLYMA17G35423
N
0.903
GLYMA20G26980
Glycine max
GLYMA20G26980
N
0.903
GLYMA20G26991
Glycine max
GLYMA20G26991
N
0.903
GRMZM2G057260
Zea mays
GRMZM2G057260
N
0.903
GRMZM2G383841
Zea mays
GRMZM2G383841
N
0.903
GRMZM2G395549
Zea mays
GRMZM2G395549
N
0.903
GSMUA_Achr3G18870_001
Musa acuminata
GSMUA_Achr3G18870_001
N
0.903
GSMUA_Achr4G23240_001
Musa acuminata
GSMUA_Achr4G23240_001
N
0.903
GSMUA_Achr6G07760_001
Musa acuminata
GSMUA_Achr6G07760_001
N
0.903
LPERR07G17840
Leersia perrieri
LPERR07G17840
N
0.903
LPERR12G14550
Leersia perrieri
LPERR12G14550
N
0.903
MLOC_60270
Hordeum vulgare
MLOC_60270
N
0.903
MLOC_76486
Hordeum vulgare
MLOC_76486
N
0.903
MTR_1g018090
Medicago truncatula
MTR_1g018090
N
0.903
MTR_1g106460
Medicago truncatula
MTR_1g106460
N
0.903
MTR_1g106480
Medicago truncatula
MTR_1g106480
N
0.903
MTR_5g005110
Medicago truncatula
MTR_5g005110
N
0.903
OB07G26210
Oryza brachyantha
OB07G26210
N
0.903
OB12G24200
Oryza brachyantha
OB12G24200
N
0.903
OBART12G17400
Oryza barthii
OBART12G17400
N
0.903
OGLUM07G20330
Oryza glumaepatula
OGLUM07G20330
N
0.903
OGLUM09G03740
Oryza glumaepatula
OGLUM09G03740
N
0.903
OLONG_006157
Oryza longistaminata
OLONG_006157
N
0.903
OLONG_014997
Oryza longistaminata
OLONG_014997
N
0.903
OMERI07G17220
Oryza meridionalis
OMERI07G17220
N
0.903
OMERI12G12030
Oryza meridionalis
OMERI12G12030
N
0.903
ONIVA07G18960
Oryza nivara
ONIVA07G18960
N
0.903
ONIVA12G15960
Oryza nivara
ONIVA12G15960
N
0.903
OPUNC07G19390
Oryza punctata
OPUNC07G19390
N
0.903
OPUNC12G15720
Oryza punctata
OPUNC12G15720
N
0.903
ORGLA12G0149000
Oryza glaberrima
ORGLA12G0149000
N
0.903
ORUFI07G21430
Oryza rufipogon
ORUFI07G21430
N
0.903
ORUFI12G19280
Oryza rufipogon
ORUFI12G19280
N
0.903
OS07G0588400
Oryza sativa
OS07G0588400
N
0.903
OS12G0589000
Oryza sativa
OS12G0589000
N
0.903
PGSC0003DMG400021526
Solanum tuberosum
PGSC0003DMG400021526
N
0.903
PGSC0003DMG400036714
Solanum tuberosum
PGSC0003DMG400036714
N
0.903
POPTR_0001s30150
Populus trichocarpa
POPTR_0001s30150
N
0.903
POPTR_0002s12000
Populus trichocarpa
POPTR_0002s12000
N
0.903
POPTR_0009s09210
Populus trichocarpa
POPTR_0009s09210
N
0.903
POPTR_0014s01730
Populus trichocarpa
POPTR_0014s01730
N
0.903
PRUPE_ppa015160mg
Prunus persica
PRUPE_ppa015160mg
N
0.903
Sb01g007160
Sorghum bicolor
Sb01g007160
N
0.903
Sb02g037990
Sorghum bicolor
Sb02g037990
N
0.903
Si032445m.g
Setaria italica
Si032445m.g
N
0.903
Si039720m.g
Setaria italica
Si039720m.g
N
0.903
Solyc01g107140.1
Solanum lycopersicum
Solyc01g107140.1
N
0.903
Solyc04g077960.1
Solanum lycopersicum
Solyc04g077960.1
N
0.903
TCM_007220
Theobroma cacao
TCM_007220
N
0.903
TCM_034717
Theobroma cacao
TCM_034717
N
0.903
Traes_5AS_5B9D5E067
Triticum aestivum
Traes_5AS_5B9D5E067
N
0.903
Traes_5DS_51467BEB4
Triticum aestivum
Traes_5DS_51467BEB4
N
0.903
TRIUR3_24341
Triticum urartu
TRIUR3_24341
N
0.903
VIT_03s0091g00730
Vitis vinifera
VIT_03s0091g00730
N
0.903
VIT_18s0001g09210
Vitis vinifera
VIT_18s0001g09210
N
0.903
Ca_01588
Cicer arietinum
Ca_01588
N
0.903
Ca_05644
Cicer arietinum
Ca_05644
N
0.903
Ca_11909
Cicer arietinum
Ca_11909
N
0.903
Ca_18366
Cicer arietinum
Ca_18366
N
0.903
Cla016346
Citrullus lanatus
Cla016346
N
0.903
Cla020918
Citrullus lanatus
Cla020918
N
0.903
Cla022968
Citrullus lanatus
Cla022968
N
0.903
Pm005392
Prunus mume
Pm005392
N
0.903
28152.m000914
Ricinus communis
28152.m000914
N
0.903
30170.m013749
Ricinus communis
30170.m013749
N
0.903
cassava14986.m1
Manihot esculenta
cassava14986.m1
N
0.903
cassava20440.m1
Manihot esculenta
cassava20440.m1
N
0.903
cassava25589.m1
Manihot esculenta
cassava25589.m1
N
0.903
cassava38950.m1
Manihot esculenta
cassava38950.m1
N
0.903
Cucsa.097490
Cucumis sativus
Cucsa.097490
N
0.903
Cucsa.219180
Cucumis sativus
Cucsa.219180
N
0.903
Cucsa.352750
Cucumis sativus
Cucsa.352750
N
0.903
mgf018282m
Mimulus guttatus
mgf018282m
N
0.903
mgf022238m
Mimulus guttatus
mgf022238m
N
0.903
mgf024863m
Mimulus guttatus
mgf024863m
N
0.903
Aquca_017_00066
Aquilegia coerulea
Aquca_017_00066
N
0.903
Aquca_042_00162
Aquilegia coerulea
Aquca_042_00162
N
0.903
Aquca_042_00163
Aquilegia coerulea
Aquca_042_00163
N
0.903
Bostr.2199s0029
Boechera stricta
Bostr.2199s0029
N
0.903
Bostr.7867s1234
Boechera stricta
Bostr.7867s1234
N
0.903
Cagra.1305s0010
Capsella grandiflora
Cagra.1305s0010
N
0.903
Cagra.9228s0001
Capsella grandiflora
Cagra.9228s0001
N
0.903
Carubv10006623m.g
Capsella rubella
Carubv10006623m.g
N
0.903
Carubv10015484m.g
Capsella rubella
Carubv10015484m.g
N
0.903
Ciclev10003450m.g
Citrus clementina
Ciclev10003450m.g
N
0.903
Ciclev10030309m.g
Citrus clementina
Ciclev10030309m.g
N
0.903
Eucgr.I01069
Eucalyptus grandis
Eucgr.I01069
N
0.903
evm.TU.supercontig_106.57
Carica papaya
evm.TU.supercontig_106.57
N
0.903
evm.TU.supercontig_142.14
Carica papaya
evm.TU.supercontig_142.14
N
0.903
gene02560-v1.0-hybrid
Fragaria vesca
gene02560-v1.0-hybrid
N
0.903
Gorai.005G231900
Gossypium raimondii
Gorai.005G231900
N
0.903
Gorai.009G219100
Gossypium raimondii
Gorai.009G219100
N
0.903
Gorai.010G025400
Gossypium raimondii
Gorai.010G025400
N
0.903
Lus10001068.g
Linum usitatissimum
Lus10001068.g
N
0.903
Lus10004315.g
Linum usitatissimum
Lus10004315.g
N
0.903
MDP0000145825
Malus domestica
MDP0000145825
N
0.903
MDP0000198037
Malus domestica
MDP0000198037
N
0.903
MDP0000573178
Malus domestica
MDP0000573178
N
0.903
orange1.1g036928m.g
Citrus sinensis
orange1.1g036928m.g
N
0.903
orange1.1g047654m.g
Citrus sinensis
orange1.1g047654m.g
N
0.903
Pavir.Ba01059
Panicum virgatum
Pavir.Ba01059
N
0.903
Pavir.Bb01173
Panicum virgatum
Pavir.Bb01173
N
0.903
Pavir.Ia00352
Panicum virgatum
Pavir.Ia00352
N
0.903
Pavir.Ia04640
Panicum virgatum
Pavir.Ia04640
N
0.903
Pavir.Ib00696
Panicum virgatum
Pavir.Ib00696
N
0.903
Pavir.J00626
Panicum virgatum
Pavir.J00626
N
0.903
SapurV1A.0005s0400
Salix purpurea
SapurV1A.0005s0400
N
0.903
SapurV1A.0019s0320
Salix purpurea
SapurV1A.0019s0320
N
0.903
SapurV1A.0476s0200
Salix purpurea
SapurV1A.0476s0200
N
0.903
Thhalv10026786m.g
Eutrema salsugineum
Thhalv10026786m.g
N
0.903
PK01802.1
Cannabis sativa
PK01802.1
N
0.903
chr1.CM0088.610.nd
Lotus japonicus
chr1.CM0088.610.nd
N
0.903
BGIOSGA011251
Oryza indica
BGIOSGA011251
N
0.901
LPERR11G16970
Leersia perrieri
LPERR11G16970
N
0.901
OB03G17860
Oryza brachyantha
OB03G17860
N
0.901
OBART03G07520
Oryza barthii
OBART03G07520
N
0.901
OGLUM03G07680
Oryza glumaepatula
OGLUM03G07680
N
0.901
OLONG_008046
Oryza longistaminata
OLONG_008046
N
0.901
OMERI03G07360
Oryza meridionalis
OMERI03G07360
N
0.901
ONIVA03G07980
Oryza nivara
ONIVA03G07980
N
0.901
OPUNC03G07300
Oryza punctata
OPUNC03G07300
N
0.901
ORGLA03G0073500
Oryza glaberrima
ORGLA03G0073500
N
0.901
ORUFI03G07580
Oryza rufipogon
ORUFI03G07580
N
0.901
OS03G0205300
Oryza sativa
OS03G0205300
N
0.901
PGSC0003DMG400039299
Solanum tuberosum
PGSC0003DMG400039299
N
0.901
Sb05g025230
Sorghum bicolor
Sb05g025230
N
0.901
Eucgr.F02259
Eucalyptus grandis
Eucgr.F02259
N
0.901
Eucgr.G01234
Eucalyptus grandis
Eucgr.G01234
N
0.901
GSMUA_Achr2G17130_001
Musa acuminata
GSMUA_Achr2G17130_001
N
0.900
fgenesh2_kg.3__3067__AT2G14760.1
Arabidopsis lyrata
fgenesh2_kg.3__3067__AT2G14760.1
N
0.890
GLYMA04G04801
Glycine max
GLYMA04G04801
N
0.883
GSMUA_Achr9G09600_001
Musa acuminata
GSMUA_Achr9G09600_001
N
0.883
Thhalv10003393m.g
Eutrema salsugineum
Thhalv10003393m.g
N
0.883
GSMUA_AchrUn_randomG07080_001
Musa acuminata
GSMUA_AchrUn_randomG07080_001
N
0.879
Traes_5BS_0F8DBB33D
Triticum aestivum
Traes_5BS_0F8DBB33D
N
0.879
GSMUA_Achr6G16890_001
Musa acuminata
GSMUA_Achr6G16890_001
N
0.876
BRADI1G22960
Brachypodium distachyon
BRADI1G22960
N
0.871
F775_02706
Aegilops tauschii
F775_02706
N
0.871
MLOC_74022
Hordeum vulgare
MLOC_74022
N
0.871
Traes_2AS_9A3F73BE3
Triticum aestivum
Traes_2AS_9A3F73BE3
N
0.871
Traes_2BS_659F9ABB9
Triticum aestivum
Traes_2BS_659F9ABB9
N
0.871
Traes_2DS_7C9C33E09
Triticum aestivum
Traes_2DS_7C9C33E09
N
0.871
TRIUR3_17670
Triticum urartu
TRIUR3_17670
N
0.871
BHLH54
Arabidopsis thaliana
AT1G27740
N
0.868
Bo3g142890
Brassica oleracea
Bo3g142890
N
0.868
Bo5g052310
Brassica oleracea
Bo5g052310
N
0.868
Bo7g048630
Brassica oleracea
Bo7g048630
N
0.868
Bra010921
Brassica rapa
Bra010921
N
0.868
Bra030063
Brassica rapa
Bra030063
N
0.868
Bra032846
Brassica rapa
Bra032846
N
0.868
F775_27628
Aegilops tauschii
F775_27628
N
0.868
RSL4
Arabidopsis lyrata
fgenesh2_kg.1__2933__AT1G27740.1
N
0.868
Traes_4AL_6A6EC9A6A
Triticum aestivum
Traes_4AL_6A6EC9A6A
N
0.868
Traes_4BS_9BFCC52AD
Triticum aestivum
Traes_4BS_9BFCC52AD
N
0.868
Traes_4DS_7488F4608
Triticum aestivum
Traes_4DS_7488F4608
N
0.868
Pm021172
Prunus mume
Pm021172
N
0.868
mgf019332m
Mimulus guttatus
mgf019332m
N
0.868
Bostr.15697s0100
Boechera stricta
Bostr.15697s0100
N
0.868
Cagra.1822s0081
Capsella grandiflora
Cagra.1822s0081
N
0.868
Carubv10011072m.g
Capsella rubella
Carubv10011072m.g
N
0.868
gene25555-v1.0-hybrid
Fragaria vesca
gene25555-v1.0-hybrid
N
0.868
Thhalv10009862m.g
Eutrema salsugineum
Thhalv10009862m.g
N
0.868
chr5.CM0096.500.nd
Lotus japonicus
chr5.CM0096.500.nd
N
0.868
chr5.CM0200.480.nc
Lotus japonicus
chr5.CM0200.480.nc
N
0.868
MDP0000946515
Malus domestica
MDP0000946515
N
0.867
Al_scaffold_0797_1
Arabidopsis lyrata
Al_scaffold_0797_1
N
0.861
BHLH139
Arabidopsis thaliana
AT5G43175
N
0.861
fgenesh2_kg.8__503__AT5G43175.1
Arabidopsis lyrata
fgenesh2_kg.8__503__AT5G43175.1
N
0.861
Bostr.3148s0158
Boechera stricta
Bostr.3148s0158
N
0.861
Cagra.1103s0007
Capsella grandiflora
Cagra.1103s0007
N
0.861
Carubv10028625m.g
Capsella rubella
Carubv10028625m.g
N
0.861
SapurV1A.0845s0110
Salix purpurea
SapurV1A.0845s0110
N
0.857
SapurV1A.2301s0020
Salix purpurea
SapurV1A.2301s0020
N
0.857
LPERR12G11190
Leersia perrieri
LPERR12G11190
N
0.852
ONIVA12G13790
Oryza nivara
ONIVA12G13790
N
0.852
MTR_3g103030
Medicago truncatula
MTR_3g103030
N
0.846
SELMODRAFT_404767
Selaginella moellendorffii
SELMODRAFT_404767
N
0.845
SELMODRAFT_419388
Selaginella moellendorffii
SELMODRAFT_419388
N
0.845
MDP0000131874
Malus domestica
MDP0000131874
N
0.845