CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400022058
(
Solanum tuberosum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
PGSC0003DMG400022058
T043490_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.857
0.843
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.857
0.843
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400056716
bHLH
373
423
ATHPRSIAERVRRTRISDRMRKLQELVPNMDKQTNTADMLDFAVDYIKELE
Links
Other
bHLH
family TFs
Other
Solanum tuberosum
TFs
89 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc11g056650.1
Solanum lycopersicum
Solyc11g056650.1
I
0.914
PGSC0003DMG400023852
Solanum tuberosum
PGSC0003DMG400023852
I
0.883
Solyc12g100140.1
Solanum lycopersicum
Solyc12g100140.1
I
0.883
Bo5g085170
Brassica oleracea
Bo5g085170
I
0.870
Bra034421
Brassica rapa
Bra034421
I
0.870
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.857
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.857
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.857
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.857
Bra028088
Brassica rapa
Bra028088
I
0.857
Bra036760
Brassica rapa
Bra036760
I
0.857
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.857
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.857
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.857
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.857
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.857
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.857
TCM_036484
Theobroma cacao
TCM_036484
I
0.857
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.857
Pm004181
Prunus mume
Pm004181
I
0.857
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.857
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.857
mgf002701m
Mimulus guttatus
mgf002701m
I
0.857
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.857
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.857
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.857
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.857
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.857
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.857
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.857
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.857
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.857
MDP0000269890
Malus domestica
MDP0000269890
I
0.857
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.857
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.857
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.857
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.857
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.857
PK06301.1
Cannabis sativa
PK06301.1
I
0.857
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.849
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.849
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.849
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.849
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.849
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.849
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.849
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.849
TCM_024842
Theobroma cacao
TCM_024842
I
0.849
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.849
Cla017792
Citrullus lanatus
Cla017792
I
0.849
Pm000447
Prunus mume
Pm000447
I
0.849
Pm025821
Prunus mume
Pm025821
I
0.849
29216.m000261
Ricinus communis
29216.m000261
I
0.849
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.849
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.849
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.849
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.849
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.849
mgf016734m
Mimulus guttatus
mgf016734m
I
0.849
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.849
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.849
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.849
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.849
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.849
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.849
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.849
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.849
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.849
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.849
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.849
MDP0000180376
Malus domestica
MDP0000180376
I
0.849
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.849
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.849
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.849
PK18038.1
Cannabis sativa
PK18038.1
I
0.849
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.849
AMTR_s00070p00149100
Amborella trichopoda
AMTR_s00070p00149100
I
0.846
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.846
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.846
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.846
TCM_005925
Theobroma cacao
TCM_005925
I
0.846
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.846
30152.m002405
Ricinus communis
30152.m002405
I
0.846
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.846
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.846
cassava36544.valid.m1
Manihot esculenta
cassava36544.valid.m1
I
0.843
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.842
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.842
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.841