CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PGSC0003DMG400039299
(
Solanum tuberosum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
PGSC0003DMG400039299
T043522_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PGSC0003DMT400089728
bHLH
228
271
LYARKRRERINERLKTLQSLIPNGTKVDISTMLEEAVQYVKFLQ
Links
Other
bHLH
family TFs
Other
Solanum tuberosum
TFs
212 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA011251
Oryza indica
BGIOSGA011251
N
0.914
LPERR11G16970
Leersia perrieri
LPERR11G16970
N
0.914
OB03G17860
Oryza brachyantha
OB03G17860
N
0.914
OBART03G07520
Oryza barthii
OBART03G07520
N
0.914
OGLUM03G07680
Oryza glumaepatula
OGLUM03G07680
N
0.914
OLONG_008046
Oryza longistaminata
OLONG_008046
N
0.914
OMERI03G07360
Oryza meridionalis
OMERI03G07360
N
0.914
ONIVA03G07980
Oryza nivara
ONIVA03G07980
N
0.914
OPUNC03G07300
Oryza punctata
OPUNC03G07300
N
0.914
ORGLA03G0073500
Oryza glaberrima
ORGLA03G0073500
N
0.914
ORUFI03G07580
Oryza rufipogon
ORUFI03G07580
N
0.914
OS03G0205300
Oryza sativa
OS03G0205300
N
0.914
Sb05g025230
Sorghum bicolor
Sb05g025230
N
0.914
Eucgr.F02259
Eucalyptus grandis
Eucgr.F02259
N
0.914
Eucgr.G01234
Eucalyptus grandis
Eucgr.G01234
N
0.914
AMTR_s00164p00062120
Amborella trichopoda
AMTR_s00164p00062120
N
0.912
AT2G14760
Arabidopsis thaliana
AT2G14760
N
0.912
BHLH85
Arabidopsis thaliana
AT4G33880
N
0.912
BGIOSGA023988
Oryza indica
BGIOSGA023988
N
0.912
BGIOSGA035917
Oryza indica
BGIOSGA035917
N
0.912
Bo1g007780
Brassica oleracea
Bo1g007780
N
0.912
Bo3g169400
Brassica oleracea
Bo3g169400
N
0.912
Bo7g116460
Brassica oleracea
Bo7g116460
N
0.912
Bra011476
Brassica rapa
Bra011476
N
0.912
Bra034587
Brassica rapa
Bra034587
N
0.912
Bra036969
Brassica rapa
Bra036969
N
0.912
BRADI1G14600
Brachypodium distachyon
BRADI1G14600
N
0.912
BRADI4G03070
Brachypodium distachyon
BRADI4G03070
N
0.912
F775_02582
Aegilops tauschii
F775_02582
N
0.912
RSL2
Arabidopsis lyrata
fgenesh2_kg.7__724__AT4G33880.1
N
0.912
GLYMA10G40350
Glycine max
GLYMA10G40350
N
0.912
GLYMA10G40360
Glycine max
GLYMA10G40360
N
0.912
GLYMA14G09781
Glycine max
GLYMA14G09781
N
0.912
GLYMA17G35423
Glycine max
GLYMA17G35423
N
0.912
GLYMA20G26980
Glycine max
GLYMA20G26980
N
0.912
GLYMA20G26991
Glycine max
GLYMA20G26991
N
0.912
GRMZM2G395549
Zea mays
GRMZM2G395549
N
0.912
GSMUA_Achr3G18870_001
Musa acuminata
GSMUA_Achr3G18870_001
N
0.912
GSMUA_Achr4G23240_001
Musa acuminata
GSMUA_Achr4G23240_001
N
0.912
GSMUA_Achr6G07760_001
Musa acuminata
GSMUA_Achr6G07760_001
N
0.912
LPERR07G17840
Leersia perrieri
LPERR07G17840
N
0.912
LPERR12G14550
Leersia perrieri
LPERR12G14550
N
0.912
MLOC_60270
Hordeum vulgare
MLOC_60270
N
0.912
MLOC_76486
Hordeum vulgare
MLOC_76486
N
0.912
MTR_1g018090
Medicago truncatula
MTR_1g018090
N
0.912
MTR_1g106460
Medicago truncatula
MTR_1g106460
N
0.912
MTR_1g106480
Medicago truncatula
MTR_1g106480
N
0.912
MTR_5g005110
Medicago truncatula
MTR_5g005110
N
0.912
OB07G26210
Oryza brachyantha
OB07G26210
N
0.912
OB12G24200
Oryza brachyantha
OB12G24200
N
0.912
OBART12G17400
Oryza barthii
OBART12G17400
N
0.912
OGLUM07G20330
Oryza glumaepatula
OGLUM07G20330
N
0.912
OGLUM09G03740
Oryza glumaepatula
OGLUM09G03740
N
0.912
OLONG_006157
Oryza longistaminata
OLONG_006157
N
0.912
OLONG_014997
Oryza longistaminata
OLONG_014997
N
0.912
OMERI07G17220
Oryza meridionalis
OMERI07G17220
N
0.912
OMERI12G12030
Oryza meridionalis
OMERI12G12030
N
0.912
ONIVA07G18960
Oryza nivara
ONIVA07G18960
N
0.912
ONIVA12G15960
Oryza nivara
ONIVA12G15960
N
0.912
OPUNC07G19390
Oryza punctata
OPUNC07G19390
N
0.912
OPUNC12G15720
Oryza punctata
OPUNC12G15720
N
0.912
ORGLA12G0149000
Oryza glaberrima
ORGLA12G0149000
N
0.912
ORUFI07G21430
Oryza rufipogon
ORUFI07G21430
N
0.912
ORUFI12G19280
Oryza rufipogon
ORUFI12G19280
N
0.912
OS07G0588400
Oryza sativa
OS07G0588400
N
0.912
OS12G0589000
Oryza sativa
OS12G0589000
N
0.912
PGSC0003DMG400021526
Solanum tuberosum
PGSC0003DMG400021526
N
0.912
PGSC0003DMG400036714
Solanum tuberosum
PGSC0003DMG400036714
N
0.912
POPTR_0001s30150
Populus trichocarpa
POPTR_0001s30150
N
0.912
POPTR_0002s12000
Populus trichocarpa
POPTR_0002s12000
N
0.912
POPTR_0009s09210
Populus trichocarpa
POPTR_0009s09210
N
0.912
POPTR_0014s01730
Populus trichocarpa
POPTR_0014s01730
N
0.912
PRUPE_ppa015160mg
Prunus persica
PRUPE_ppa015160mg
N
0.912
Sb01g007160
Sorghum bicolor
Sb01g007160
N
0.912
Si039720m.g
Setaria italica
Si039720m.g
N
0.912
Solyc01g107140.1
Solanum lycopersicum
Solyc01g107140.1
N
0.912
Solyc04g077960.1
Solanum lycopersicum
Solyc04g077960.1
N
0.912
TCM_007220
Theobroma cacao
TCM_007220
N
0.912
TCM_034717
Theobroma cacao
TCM_034717
N
0.912
Traes_5AS_5B9D5E067
Triticum aestivum
Traes_5AS_5B9D5E067
N
0.912
Traes_5DS_51467BEB4
Triticum aestivum
Traes_5DS_51467BEB4
N
0.912
TRIUR3_24341
Triticum urartu
TRIUR3_24341
N
0.912
VIT_03s0091g00730
Vitis vinifera
VIT_03s0091g00730
N
0.912
VIT_18s0001g09210
Vitis vinifera
VIT_18s0001g09210
N
0.912
Ca_01588
Cicer arietinum
Ca_01588
N
0.912
Ca_05644
Cicer arietinum
Ca_05644
N
0.912
Ca_11909
Cicer arietinum
Ca_11909
N
0.912
Ca_18366
Cicer arietinum
Ca_18366
N
0.912
Cla016346
Citrullus lanatus
Cla016346
N
0.912
Cla020918
Citrullus lanatus
Cla020918
N
0.912
Cla022968
Citrullus lanatus
Cla022968
N
0.912
Pm005392
Prunus mume
Pm005392
N
0.912
28152.m000914
Ricinus communis
28152.m000914
N
0.912
30170.m013749
Ricinus communis
30170.m013749
N
0.912
cassava14986.m1
Manihot esculenta
cassava14986.m1
N
0.912
cassava20440.m1
Manihot esculenta
cassava20440.m1
N
0.912
cassava25589.m1
Manihot esculenta
cassava25589.m1
N
0.912
cassava38950.m1
Manihot esculenta
cassava38950.m1
N
0.912
Cucsa.097490
Cucumis sativus
Cucsa.097490
N
0.912
Cucsa.219180
Cucumis sativus
Cucsa.219180
N
0.912
Cucsa.352750
Cucumis sativus
Cucsa.352750
N
0.912
mgf018282m
Mimulus guttatus
mgf018282m
N
0.912
mgf022238m
Mimulus guttatus
mgf022238m
N
0.912
mgf024863m
Mimulus guttatus
mgf024863m
N
0.912
Aquca_017_00066
Aquilegia coerulea
Aquca_017_00066
N
0.912
Aquca_042_00162
Aquilegia coerulea
Aquca_042_00162
N
0.912
Aquca_042_00163
Aquilegia coerulea
Aquca_042_00163
N
0.912
Bostr.2199s0029
Boechera stricta
Bostr.2199s0029
N
0.912
Bostr.7867s1234
Boechera stricta
Bostr.7867s1234
N
0.912
Cagra.1305s0010
Capsella grandiflora
Cagra.1305s0010
N
0.912
Cagra.9228s0001
Capsella grandiflora
Cagra.9228s0001
N
0.912
Carubv10006623m.g
Capsella rubella
Carubv10006623m.g
N
0.912
Carubv10015484m.g
Capsella rubella
Carubv10015484m.g
N
0.912
Ciclev10003450m.g
Citrus clementina
Ciclev10003450m.g
N
0.912
Ciclev10030309m.g
Citrus clementina
Ciclev10030309m.g
N
0.912
Eucgr.I01069
Eucalyptus grandis
Eucgr.I01069
N
0.912
evm.TU.supercontig_106.57
Carica papaya
evm.TU.supercontig_106.57
N
0.912
evm.TU.supercontig_142.14
Carica papaya
evm.TU.supercontig_142.14
N
0.912
gene02560-v1.0-hybrid
Fragaria vesca
gene02560-v1.0-hybrid
N
0.912
Gorai.005G231900
Gossypium raimondii
Gorai.005G231900
N
0.912
Gorai.009G219100
Gossypium raimondii
Gorai.009G219100
N
0.912
Gorai.010G025400
Gossypium raimondii
Gorai.010G025400
N
0.912
Lus10001068.g
Linum usitatissimum
Lus10001068.g
N
0.912
Lus10004315.g
Linum usitatissimum
Lus10004315.g
N
0.912
MDP0000145825
Malus domestica
MDP0000145825
N
0.912
MDP0000198037
Malus domestica
MDP0000198037
N
0.912
MDP0000573178
Malus domestica
MDP0000573178
N
0.912
orange1.1g036928m.g
Citrus sinensis
orange1.1g036928m.g
N
0.912
orange1.1g047654m.g
Citrus sinensis
orange1.1g047654m.g
N
0.912
Pavir.Ia00352
Panicum virgatum
Pavir.Ia00352
N
0.912
Pavir.Ia04640
Panicum virgatum
Pavir.Ia04640
N
0.912
Pavir.Ib00696
Panicum virgatum
Pavir.Ib00696
N
0.912
Pavir.J00626
Panicum virgatum
Pavir.J00626
N
0.912
SapurV1A.0005s0400
Salix purpurea
SapurV1A.0005s0400
N
0.912
SapurV1A.0019s0320
Salix purpurea
SapurV1A.0019s0320
N
0.912
SapurV1A.0476s0200
Salix purpurea
SapurV1A.0476s0200
N
0.912
Thhalv10026786m.g
Eutrema salsugineum
Thhalv10026786m.g
N
0.912
PK01802.1
Cannabis sativa
PK01802.1
N
0.912
chr1.CM0088.610.nd
Lotus japonicus
chr1.CM0088.610.nd
N
0.912
GSMUA_Achr2G17130_001
Musa acuminata
GSMUA_Achr2G17130_001
N
0.909
BGIOSGA010239
Oryza indica
BGIOSGA010239
N
0.901
GRMZM2G057260
Zea mays
GRMZM2G057260
N
0.901
GRMZM2G383841
Zea mays
GRMZM2G383841
N
0.901
LPERR03G21650
Leersia perrieri
LPERR03G21650
N
0.901
OB03G34210
Oryza brachyantha
OB03G34210
N
0.901
OBART03G26170
Oryza barthii
OBART03G26170
N
0.901
OGLUM03G27050
Oryza glumaepatula
OGLUM03G27050
N
0.901
OLONG_010636
Oryza longistaminata
OLONG_010636
N
0.901
OMERI03G23570
Oryza meridionalis
OMERI03G23570
N
0.901
ONIVA03G27180
Oryza nivara
ONIVA03G27180
N
0.901
OPUNC03G23870
Oryza punctata
OPUNC03G23870
N
0.901
ORGLA03G0242600
Oryza glaberrima
ORGLA03G0242600
N
0.901
ORUFI03G27070
Oryza rufipogon
ORUFI03G27070
N
0.901
Sb02g037990
Sorghum bicolor
Sb02g037990
N
0.901
Si032445m.g
Setaria italica
Si032445m.g
N
0.901
Pavir.Ba01059
Panicum virgatum
Pavir.Ba01059
N
0.901
Pavir.Bb01173
Panicum virgatum
Pavir.Bb01173
N
0.901
fgenesh2_kg.3__3067__AT2G14760.1
Arabidopsis lyrata
fgenesh2_kg.3__3067__AT2G14760.1
N
0.899
GLYMA04G04801
Glycine max
GLYMA04G04801
N
0.892
GSMUA_Achr9G09600_001
Musa acuminata
GSMUA_Achr9G09600_001
N
0.892
Thhalv10003393m.g
Eutrema salsugineum
Thhalv10003393m.g
N
0.892
GSMUA_Achr6G16890_001
Musa acuminata
GSMUA_Achr6G16890_001
N
0.890
GSMUA_AchrUn_randomG07080_001
Musa acuminata
GSMUA_AchrUn_randomG07080_001
N
0.888
Traes_5BS_0F8DBB33D
Triticum aestivum
Traes_5BS_0F8DBB33D
N
0.888
BRADI1G22960
Brachypodium distachyon
BRADI1G22960
N
0.880
F775_02706
Aegilops tauschii
F775_02706
N
0.880
MLOC_74022
Hordeum vulgare
MLOC_74022
N
0.880
Traes_2AS_9A3F73BE3
Triticum aestivum
Traes_2AS_9A3F73BE3
N
0.880
Traes_2BS_659F9ABB9
Triticum aestivum
Traes_2BS_659F9ABB9
N
0.880
Traes_2DS_7C9C33E09
Triticum aestivum
Traes_2DS_7C9C33E09
N
0.880
TRIUR3_17670
Triticum urartu
TRIUR3_17670
N
0.880
BHLH54
Arabidopsis thaliana
AT1G27740
N
0.877
Bo3g142890
Brassica oleracea
Bo3g142890
N
0.877
Bo5g052310
Brassica oleracea
Bo5g052310
N
0.877
Bo7g048630
Brassica oleracea
Bo7g048630
N
0.877
Bra010921
Brassica rapa
Bra010921
N
0.877
Bra030063
Brassica rapa
Bra030063
N
0.877
Bra032846
Brassica rapa
Bra032846
N
0.877
F775_27628
Aegilops tauschii
F775_27628
N
0.877
RSL4
Arabidopsis lyrata
fgenesh2_kg.1__2933__AT1G27740.1
N
0.877
Traes_4AL_6A6EC9A6A
Triticum aestivum
Traes_4AL_6A6EC9A6A
N
0.877
Traes_4BS_9BFCC52AD
Triticum aestivum
Traes_4BS_9BFCC52AD
N
0.877
Traes_4DS_7488F4608
Triticum aestivum
Traes_4DS_7488F4608
N
0.877
Pm021172
Prunus mume
Pm021172
N
0.877
mgf019332m
Mimulus guttatus
mgf019332m
N
0.877
Bostr.15697s0100
Boechera stricta
Bostr.15697s0100
N
0.877
Cagra.1822s0081
Capsella grandiflora
Cagra.1822s0081
N
0.877
Carubv10011072m.g
Capsella rubella
Carubv10011072m.g
N
0.877
gene25555-v1.0-hybrid
Fragaria vesca
gene25555-v1.0-hybrid
N
0.877
Thhalv10009862m.g
Eutrema salsugineum
Thhalv10009862m.g
N
0.877
chr5.CM0096.500.nd
Lotus japonicus
chr5.CM0096.500.nd
N
0.877
chr5.CM0200.480.nc
Lotus japonicus
chr5.CM0200.480.nc
N
0.877
MDP0000946515
Malus domestica
MDP0000946515
N
0.876
Al_scaffold_0797_1
Arabidopsis lyrata
Al_scaffold_0797_1
N
0.870
BHLH139
Arabidopsis thaliana
AT5G43175
N
0.870
fgenesh2_kg.8__503__AT5G43175.1
Arabidopsis lyrata
fgenesh2_kg.8__503__AT5G43175.1
N
0.870
Bostr.3148s0158
Boechera stricta
Bostr.3148s0158
N
0.870
Cagra.1103s0007
Capsella grandiflora
Cagra.1103s0007
N
0.870
Carubv10028625m.g
Capsella rubella
Carubv10028625m.g
N
0.870
SapurV1A.0845s0110
Salix purpurea
SapurV1A.0845s0110
N
0.866
SapurV1A.2301s0020
Salix purpurea
SapurV1A.2301s0020
N
0.866
MDP0000131874
Malus domestica
MDP0000131874
N
0.859
LPERR12G11190
Leersia perrieri
LPERR12G11190
N
0.855
ONIVA12G13790
Oryza nivara
ONIVA12G13790
N
0.855
MLOC_67369
Hordeum vulgare
MLOC_67369
N
0.847
Traes_4AS_7530AAEB4
Triticum aestivum
Traes_4AS_7530AAEB4
N
0.847
Traes_4DL_61AE80723
Triticum aestivum
Traes_4DL_61AE80723
N
0.847
TRIUR3_01454
Triticum urartu
TRIUR3_01454
N
0.847
BRADI1G70860
Brachypodium distachyon
BRADI1G70860
N
0.845
MTR_3g103030
Medicago truncatula
MTR_3g103030
N
0.844
SELMODRAFT_404767
Selaginella moellendorffii
SELMODRAFT_404767
N
0.843
SELMODRAFT_419388
Selaginella moellendorffii
SELMODRAFT_419388
N
0.843