POPTR_0003s14710 (Populus trichocarpa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 POPTR_0003s14710 T043784_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYC2
M01699_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8083 		0.847 0.833
PK18474.1
M01127_2.00 		Cannabis sativa
NRCACGTGCN
NGCACGTGYN		 PBM
Lambert et al.(2019)
pTH10273 		0.847 0.833
PK18474.1
M01768_2.00 		Cannabis sativa
NCACGWK
MWCGTGN		 PBM
Weirauch et al.(2014)
pTH9589 		0.847 0.833
MYC4
M01707_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8260 		0.847 0.812
MYC3
M01712_2.00 		Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK		 PBM
Weirauch et al.(2014)
pTH8854 		0.847 0.812
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s14710.1 bHLH 220 267

Links

Other bHLH family TFs
Other Populus trichocarpa TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27964.m000352 Ricinus communis 27964.m000352 I 0.866
27964.m000356 Ricinus communis 27964.m000356 I 0.866
30068.m002581 Ricinus communis 30068.m002581 I 0.894
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.841
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.866
ATMYC2 Arabidopsis lyrata scaffold_103634.1 I 0.847
Bo01130s010 Brassica oleracea Bo01130s010 I 0.847
Bo1g017990 Brassica oleracea Bo1g017990 I 0.847
Bo5g086990 Brassica oleracea Bo5g086990 I 0.847
Bo7g075710 Brassica oleracea Bo7g075710 I 0.847
Bo8g028850 Brassica oleracea Bo8g028850 I 0.847
Bo9g065530 Brassica oleracea Bo9g065530 I 0.847
Bo9g066680 Brassica oleracea Bo9g066680 I 0.847
Bostr.28243s0060 Boechera stricta Bostr.28243s0060 I 0.847
Bostr.30275s0255 Boechera stricta Bostr.30275s0255 I 0.847
Bostr.3359s0090 Boechera stricta Bostr.3359s0090 I 0.847
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.866
Bra010178 Brassica rapa Bra010178 I 0.847
Bra013263 Brassica rapa Bra013263 I 0.847
Bra017520 Brassica rapa Bra017520 I 0.844
Bra017523 Brassica rapa Bra017523 I 0.847
Bra017527 Brassica rapa Bra017527 I 0.847
Bra024993 Brassica rapa Bra024993 I 0.846
Bra024998 Brassica rapa Bra024998 I 0.847
BRADI3G41940 Brachypodium distachyon BRADI3G41940 N 0.857
Cagra.0751s0023 Capsella grandiflora Cagra.0751s0023 I 0.847
Cagra.3356s0080 Capsella grandiflora Cagra.3356s0080 I 0.847
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.866
Cagra.7865s0024 Capsella grandiflora Cagra.7865s0024 I 0.847
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.866
Carubv10004392m.g Capsella rubella Carubv10004392m.g I 0.847
Carubv10008586m.g Capsella rubella Carubv10008586m.g I 0.847
Carubv10028441m.g Capsella rubella Carubv10028441m.g I 0.847
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.866
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.866
cassava39612.m1 Manihot esculenta cassava39612.m1 I 0.914
cassava40529.m1 Manihot esculenta cassava40529.m1 I 0.914
cassava41468.m1 Manihot esculenta cassava41468.m1 I 0.894
cassava45188.m1 Manihot esculenta cassava45188.m1 I 0.914
cassava45233.m1 Manihot esculenta cassava45233.m1 I 0.914
cassava45234.m1 Manihot esculenta cassava45234.m1 I 0.914
Ca_09378 Cicer arietinum Ca_09378 I 0.841
Ca_11514 Cicer arietinum Ca_11514 I 0.847
Ca_12352 Cicer arietinum Ca_12352 I 0.847
Ca_17603 Cicer arietinum Ca_17603 I 0.865
chr2.CM0177.830.nc Lotus japonicus chr2.CM0177.830.nc I 0.847
Ciclev10019730m.g Citrus clementina Ciclev10019730m.g N 0.890
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.866
Cla006801 Citrullus lanatus Cla006801 I 0.846
Cla006802 Citrullus lanatus Cla006802 I 0.846
Cla007989 Citrullus lanatus Cla007989 I 0.842
Cla008954 Citrullus lanatus Cla008954 I 0.856
Cucsa.120830 Cucumis sativus Cucsa.120830 I 0.846
Cucsa.321840 Cucumis sativus Cucsa.321840 I 0.856
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.866
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.866
evm.TU.supercontig_1892.1 Carica papaya evm.TU.supercontig_1892.1 I 0.894
fgenesh2_kg.7__2520__AT4G17880.1 Arabidopsis lyrata fgenesh2_kg.7__2520__AT4G17880.1 I 0.847
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.879
gene10501-v1.0-hybrid Fragaria vesca gene10501-v1.0-hybrid I 0.847
gene13705-v1.0-hybrid Fragaria vesca gene13705-v1.0-hybrid I 0.844
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.866
GLYMA01G02251 Glycine max GLYMA01G02251 I 0.847
GLYMA01G12740 Glycine max GLYMA01G12740 I 0.847
GLYMA02G09670 Glycine max GLYMA02G09670 I 0.859
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.866
GLYMA08G36720 Glycine max GLYMA08G36720 I 0.847
GLYMA09G33730 Glycine max GLYMA09G33730 I 0.847
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.866
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.866
Gorai.003G182100 Gossypium raimondii Gorai.003G182100 I 0.847
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.866
Gorai.004G184800 Gossypium raimondii Gorai.004G184800 I 0.844
Gorai.007G059100 Gossypium raimondii Gorai.007G059100 N 0.842
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.866
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.866
Gorai.008G259000 Gossypium raimondii Gorai.008G259000 N 0.890
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.851
GSMUA_Achr10G07470_001 Musa acuminata GSMUA_Achr10G07470_001 I 0.842
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.866
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.854
Lus10005999.g Linum usitatissimum Lus10005999.g I 0.842
MDP0000029168 Malus domestica MDP0000029168 I 0.847
MDP0000136498 Malus domestica MDP0000136498 I 0.847
MDP0000160600 Malus domestica MDP0000160600 I 0.846
MDP0000224302 Malus domestica MDP0000224302 I 0.866
MDP0000242554 Malus domestica MDP0000242554 I 0.866
MDP0000603546 Malus domestica MDP0000603546 I 0.846
MDP0000729514 Malus domestica MDP0000729514 I 0.866
MDP0000859492 Malus domestica MDP0000859492 I 0.866
MDP0000900024 Malus domestica MDP0000900024 I 0.866
mgf001993m Mimulus guttatus mgf001993m I 0.866
mgf002775m Mimulus guttatus mgf002775m I 0.847
MTR_4g097950 Medicago truncatula MTR_4g097950 I 0.841
MTR_5g030430 Medicago truncatula MTR_5g030430 I 0.847
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.879
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.879
MTR_8g067280 Medicago truncatula MTR_8g067280 I 0.844
MYC2 Arabidopsis thaliana AT1G32640 D 0.847
MYC3 Arabidopsis thaliana AT5G46760 D 0.847
MYC4 Arabidopsis thaliana AT4G17880 D 0.847
orange1.1g010053m.g Citrus sinensis orange1.1g010053m.g N 0.890
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.866
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I 0.859
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I 0.859
PGSC0003DMG400001161 Solanum tuberosum PGSC0003DMG400001161 I 0.847
PGSC0003DMG400005528 Solanum tuberosum PGSC0003DMG400005528 I 0.849
PGSC0003DMG400005860 Solanum tuberosum PGSC0003DMG400005860 I 0.849
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.879
PGSC0003DMG400017535 Solanum tuberosum PGSC0003DMG400017535 I 0.847
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.866
PGSC0003DMG400030623 Solanum tuberosum PGSC0003DMG400030623 N 0.840
PK18474.1 Cannabis sativa PK18474.1 D 0.847
PK23618.1 Cannabis sativa PK23618.1 I 0.846
Pm023237 Prunus mume Pm023237 I 0.847
Pm029399 Prunus mume Pm029399 I 0.879
POPTR_0001s11400 Populus trichocarpa POPTR_0001s11400 I 0.903
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.866
POPTR_0003s09090 Populus trichocarpa POPTR_0003s09090 I 0.847
PRUPE_ppa002404mg Prunus persica PRUPE_ppa002404mg I 0.847
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.866
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.879
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.866
SapurV1A.0059s0390 Salix purpurea SapurV1A.0059s0390 I 0.914
SapurV1A.0094s0280 Salix purpurea SapurV1A.0094s0280 I 0.903
SapurV1A.0151s0080 Salix purpurea SapurV1A.0151s0080 I 0.847
Sb09g008120 Sorghum bicolor Sb09g008120 I 0.859
scaffold_800152.1 Arabidopsis lyrata scaffold_800152.1 I 0.847
Si021549m.g Setaria italica Si021549m.g I 0.859
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.866
Solyc02g091820.1 Solanum lycopersicum Solyc02g091820.1 N 0.840
Solyc08g008600.2 Solanum lycopersicum Solyc08g008600.2 I 0.849
Solyc08g076930.1 Solanum lycopersicum Solyc08g076930.1 I 0.847
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.879
Solyc10g009290.1 Solanum lycopersicum Solyc10g009290.1 I 0.849
TCM_005064 Theobroma cacao TCM_005064 I 0.866
TCM_015640 Theobroma cacao TCM_015640 N 0.890
Thhalv10000808m.g Eutrema salsugineum Thhalv10000808m.g I 0.847
Thhalv10007075m.g Eutrema salsugineum Thhalv10007075m.g I 0.847
Thhalv10024688m.g Eutrema salsugineum Thhalv10024688m.g I 0.847
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.866
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.866