CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0004s11180
(
Populus trichocarpa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
POPTR_0004s11180
T043794_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.884
0.784
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.884
0.784
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.884
0.784
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.864
0.863
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.864
0.863
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.864
0.863
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.864
0.863
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.861
0.824
BIM3
M01711_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8591
0.861
0.882
BIM3
M06741_2.00
Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH
Dap-seq
OMalley et al.(2016)
BIM3_col_a
0.861
0.882
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0004s11180.1
bHLH
42
92
NRSKHSETEQRRRSKINERFQALRNLIPQNDQKRDKASFLLEVIEYIQFLQ
Links
Other
bHLH
family TFs
Other
Populus trichocarpa
TFs
163 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA08G28010
Glycine max
GLYMA08G28010
I
0.914
GLYMA18G51080
Glycine max
GLYMA18G51080
I
0.914
MTR_5g048350
Medicago truncatula
MTR_5g048350
I
0.914
TCM_019015
Theobroma cacao
TCM_019015
I
0.914
BIM3
Vitis vinifera
VIT_14s0083g00930
I
0.914
Ca_22043
Cicer arietinum
Ca_22043
I
0.914
29790.m000843
Ricinus communis
29790.m000843
I
0.914
cassava14.valid.m1
Manihot esculenta
cassava14.valid.m1
I
0.914
cassava15.valid.m1
Manihot esculenta
cassava15.valid.m1
I
0.914
Cucsa.174600
Cucumis sativus
Cucsa.174600
I
0.914
Eucgr.I02069
Eucalyptus grandis
Eucgr.I02069
I
0.914
Gorai.001G197500
Gossypium raimondii
Gorai.001G197500
I
0.914
Lus10004630.g
Linum usitatissimum
Lus10004630.g
I
0.914
Lus10026684.g
Linum usitatissimum
Lus10026684.g
I
0.914
SapurV1A.0274s0040
Salix purpurea
SapurV1A.0274s0040
I
0.914
SapurV1A.2517s0020
Salix purpurea
SapurV1A.2517s0020
I
0.914
Thhalv10027863m.g
Eutrema salsugineum
Thhalv10027863m.g
I
0.914
PK00238.1
Cannabis sativa
PK00238.1
I
0.914
POPTR_0017s13610
Populus trichocarpa
POPTR_0017s13610
I
0.912
Aquca_002_00952
Aquilegia coerulea
Aquca_002_00952
I
0.894
Sb07g028860
Sorghum bicolor
Sb07g028860
I
0.892
Si013622m.g
Setaria italica
Si013622m.g
I
0.892
Pavir.Fb01833
Panicum virgatum
Pavir.Fb01833
I
0.892
Pavir.J38910
Panicum virgatum
Pavir.J38910
I
0.892
Ciclev10012135m.g
Citrus clementina
Ciclev10012135m.g
I
0.890
Lus10034358.g
Linum usitatissimum
Lus10034358.g
I
0.890
orange1.1g019485m.g
Citrus sinensis
orange1.1g019485m.g
I
0.890
BIM2
Arabidopsis thaliana
AT1G69010
D
0.884
Bo2g062560
Brassica oleracea
Bo2g062560
I
0.884
Bo6g108530
Brassica oleracea
Bo6g108530
I
0.884
Bra004355
Brassica rapa
Bra004355
I
0.884
Bra038332
Brassica rapa
Bra038332
I
0.884
BIM2
Arabidopsis lyrata
fgenesh2_kg.2__1159__AT1G69010.1
I
0.884
GLYMA02G13670
Glycine max
GLYMA02G13670
I
0.884
MTR_7g017320
Medicago truncatula
MTR_7g017320
I
0.884
PGSC0003DMG400001919
Solanum tuberosum
PGSC0003DMG400001919
I
0.884
PGSC0003DMG400019654
Solanum tuberosum
PGSC0003DMG400019654
I
0.884
POPTR_0008s11120
Populus trichocarpa
POPTR_0008s11120
I
0.884
POPTR_0010s14740
Populus trichocarpa
POPTR_0010s14740
I
0.884
PRUPE_ppa008387mg
Prunus persica
PRUPE_ppa008387mg
I
0.884
PRUPE_ppa008856mg
Prunus persica
PRUPE_ppa008856mg
I
0.884
Solyc04g005280.2
Solanum lycopersicum
Solyc04g005280.2
I
0.884
Solyc05g011810.2
Solanum lycopersicum
Solyc05g011810.2
I
0.884
TCM_011433
Theobroma cacao
TCM_011433
I
0.884
BIM2
Vitis vinifera
VIT_01s0010g00540
I
0.884
Cla022382
Citrullus lanatus
Cla022382
I
0.884
30138.m003899
Ricinus communis
30138.m003899
I
0.884
cassava29314.valid.m1
Manihot esculenta
cassava29314.valid.m1
I
0.884
cassava43370.valid.m1
Manihot esculenta
cassava43370.valid.m1
I
0.884
Cucsa.328060
Cucumis sativus
Cucsa.328060
I
0.884
mgf011829m
Mimulus guttatus
mgf011829m
I
0.884
mgf013208m
Mimulus guttatus
mgf013208m
I
0.884
Bostr.10273s0468
Boechera stricta
Bostr.10273s0468
I
0.884
Cagra.1157s0023
Capsella grandiflora
Cagra.1157s0023
I
0.884
Carubv10020679m.g
Capsella rubella
Carubv10020679m.g
I
0.884
Ciclev10032020m.g
Citrus clementina
Ciclev10032020m.g
I
0.884
Eucgr.B03113
Eucalyptus grandis
Eucgr.B03113
I
0.884
gene04534-v1.0-hybrid
Fragaria vesca
gene04534-v1.0-hybrid
I
0.884
Gorai.009G327300
Gossypium raimondii
Gorai.009G327300
I
0.884
Gorai.013G098000
Gossypium raimondii
Gorai.013G098000
I
0.884
MDP0000261293
Malus domestica
MDP0000261293
I
0.884
orange1.1g019960m.g
Citrus sinensis
orange1.1g019960m.g
I
0.884
SapurV1A.0084s0570
Salix purpurea
SapurV1A.0084s0570
I
0.884
Thhalv10018889m.g
Eutrema salsugineum
Thhalv10018889m.g
I
0.884
SapurV1A.0060s0510
Salix purpurea
SapurV1A.0060s0510
I
0.882
PK01364.1
Cannabis sativa
PK01364.1
I
0.882
GLYMA01G09010
Glycine max
GLYMA01G09010
I
0.873
evm.TU.supercontig_289.6
Carica papaya
evm.TU.supercontig_289.6
I
0.871
BIM1
Arabidopsis thaliana
AT5G08130
D
0.864
Bo2g161110
Brassica oleracea
Bo2g161110
I
0.864
Bo3g004690
Brassica oleracea
Bo3g004690
I
0.864
Bo5g020460
Brassica oleracea
Bo5g020460
I
0.864
Bo9g174770
Brassica oleracea
Bo9g174770
I
0.864
Bra009322
Brassica rapa
Bra009322
I
0.864
Bra029354
Brassica rapa
Bra029354
I
0.864
GLYMA05G07490
Glycine max
GLYMA05G07490
I
0.864
MTR_4g110040
Medicago truncatula
MTR_4g110040
I
0.864
POPTR_0015s03550
Populus trichocarpa
POPTR_0015s03550
I
0.864
PRUPE_ppa003436mg
Prunus persica
PRUPE_ppa003436mg
I
0.864
BIM1
Arabidopsis lyrata
scaffold_600819.1
I
0.864
Solyc03g114720.2
Solanum lycopersicum
Solyc03g114720.2
I
0.864
Solyc06g069370.2
Solanum lycopersicum
Solyc06g069370.2
I
0.864
TCM_014392
Theobroma cacao
TCM_014392
I
0.864
BIM1
Vitis vinifera
VIT_17s0000g04790
I
0.864
cassava29318.valid.m1
Manihot esculenta
cassava29318.valid.m1
I
0.864
cassava43379.valid.m1
Manihot esculenta
cassava43379.valid.m1
I
0.864
Cucsa.113490
Cucumis sativus
Cucsa.113490
I
0.864
mgf001137m
Mimulus guttatus
mgf001137m
I
0.864
mgf005849m
Mimulus guttatus
mgf005849m
I
0.864
Bostr.13129s0152
Boechera stricta
Bostr.13129s0152
I
0.864
Cagra.1365s0019
Capsella grandiflora
Cagra.1365s0019
I
0.864
Carubv10000655m.g
Capsella rubella
Carubv10000655m.g
I
0.864
Ciclev10020248m.g
Citrus clementina
Ciclev10020248m.g
I
0.864
Eucgr.B00645
Eucalyptus grandis
Eucgr.B00645
I
0.864
evm.TU.supercontig_3.225
Carica papaya
evm.TU.supercontig_3.225
I
0.864
Gorai.007G040600
Gossypium raimondii
Gorai.007G040600
I
0.864
orange1.1g038451m.g
Citrus sinensis
orange1.1g038451m.g
I
0.864
SapurV1A.0178s0150
Salix purpurea
SapurV1A.0178s0150
I
0.864
SapurV1A.0868s0010
Salix purpurea
SapurV1A.0868s0010
I
0.864
Thhalv10013181m.g
Eutrema salsugineum
Thhalv10013181m.g
I
0.864
PK10562.1
Cannabis sativa
PK10562.1
I
0.864
AMTR_s00006p00250310
Amborella trichopoda
AMTR_s00006p00250310
I
0.861
BIM3
Arabidopsis thaliana
AT5G38860
D
0.861
BGIOSGA028888
Oryza indica
BGIOSGA028888
I
0.861
Bra005969
Brassica rapa
Bra005969
I
0.861
BRADI3G38970
Brachypodium distachyon
BRADI3G38970
I
0.861
OB08G25940
Oryza brachyantha
OB08G25940
I
0.861
OGLUM08G19830
Oryza glumaepatula
OGLUM08G19830
I
0.861
OLONG_003583
Oryza longistaminata
OLONG_003583
I
0.861
ONIVA08G20800
Oryza nivara
ONIVA08G20800
I
0.861
OPUNC08G16820
Oryza punctata
OPUNC08G16820
I
0.861
ORGLA08G0164200
Oryza glaberrima
ORGLA08G0164200
I
0.861
ORUFI08G21030
Oryza rufipogon
ORUFI08G21030
I
0.861
OS08G0490000
Oryza sativa
OS08G0490000
I
0.861
BIM3
Arabidopsis lyrata
scaffold_704174.1
I
0.861
SELMODRAFT_451475
Selaginella moellendorffii
SELMODRAFT_451475
I
0.861
SELMODRAFT_451477
Selaginella moellendorffii
SELMODRAFT_451477
I
0.861
Traes_7DL_04FC0BF21
Triticum aestivum
Traes_7DL_04FC0BF21
N
0.861
estExt_fgenesh1_pg.C_2110039
Physcomitrella patens
estExt_fgenesh1_pg.C_2110039
I
0.861
fgenesh1_pg.scaffold_37000071
Physcomitrella patens
fgenesh1_pg.scaffold_37000071
D
0.861
gw1.90.123.1
Physcomitrella patens
gw1.90.123.1
I
0.861
Cagra.2539s0002
Capsella grandiflora
Cagra.2539s0002
I
0.861
Carubv10006445m.g
Capsella rubella
Carubv10006445m.g
I
0.861
Aquca_006_00387
Aquilegia coerulea
Aquca_006_00387
I
0.858
ALC
Arabidopsis thaliana
AT5G67110
I
0.856
BGIOSGA022375
Oryza indica
BGIOSGA022375
I
0.856
Bra012133
Brassica rapa
Bra012133
I
0.856
ALC
Arabidopsis lyrata
fgenesh2_kg.8__2705__AT5G67110.1
I
0.856
GRMZM2G017349
Zea mays
GRMZM2G017349
I
0.856
LPERR06G03910
Leersia perrieri
LPERR06G03910
I
0.856
MTR_1g019240
Medicago truncatula
MTR_1g019240
I
0.856
OBART06G04330
Oryza barthii
OBART06G04330
I
0.856
OGLUM06G04430
Oryza glumaepatula
OGLUM06G04430
I
0.856
OMERI06G05430
Oryza meridionalis
OMERI06G05430
I
0.856
ONIVA06G05510
Oryza nivara
ONIVA06G05510
I
0.856
ORGLA06G0039900
Oryza glaberrima
ORGLA06G0039900
I
0.856
ORUFI06G04330
Oryza rufipogon
ORUFI06G04330
I
0.856
PGSC0003DMG401007955
Solanum tuberosum
PGSC0003DMG401007955
I
0.856
Sb10g004500
Sorghum bicolor
Sb10g004500
I
0.856
Ca_19269
Cicer arietinum
Ca_19269
I
0.856
Bostr.0568s0133
Boechera stricta
Bostr.0568s0133
I
0.856
Carubv10028570m.g
Capsella rubella
Carubv10028570m.g
I
0.856
gene09125-v1.0-hybrid
Fragaria vesca
gene09125-v1.0-hybrid
I
0.856
Pavir.J15575
Panicum virgatum
Pavir.J15575
I
0.856
Pavir.J38250
Panicum virgatum
Pavir.J38250
I
0.856
Thhalv10004889m.g
Eutrema salsugineum
Thhalv10004889m.g
I
0.856
GLYMA17G08980
Glycine max
GLYMA17G08980
I
0.852
Cla018818
Citrullus lanatus
Cla018818
I
0.852
Cucsa.198520
Cucumis sativus
Cucsa.198520
I
0.852
GSMUA_Achr9G28050_001
Musa acuminata
GSMUA_Achr9G28050_001
I
0.851
POPTR_0012s06650
Populus trichocarpa
POPTR_0012s06650
I
0.851
Gorai.006G269200
Gossypium raimondii
Gorai.006G269200
I
0.851
GRMZM2G172795
Zea mays
GRMZM2G172795
I
0.841
LPERR04G17400
Leersia perrieri
LPERR04G17400
I
0.841
Sb06g025040
Sorghum bicolor
Sb06g025040
I
0.841
Sb06g025060
Sorghum bicolor
Sb06g025060
I
0.841
Si000845m.g
Setaria italica
Si000845m.g
I
0.841
Si012401m.g
Setaria italica
Si012401m.g
I
0.841
GSMUA_Achr2G05450_001
Musa acuminata
GSMUA_Achr2G05450_001
I
0.840
GSMUA_Achr4G19530_001
Musa acuminata
GSMUA_Achr4G19530_001
I
0.840
GSMUA_Achr9G19110_001
Musa acuminata
GSMUA_Achr9G19110_001
I
0.840
30138.m003913
Ricinus communis
30138.m003913
I
0.840
gene26139-v1.0-hybrid
Fragaria vesca
gene26139-v1.0-hybrid
I
0.840