CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s14080
(
Populus trichocarpa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
POPTR_0012s14080
T043882_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G25400
M09786_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G25400_01
0.873
0.654
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s14080.1
bHLH
72
124
KKMMHRNIERQRRQEMTTLYASLRALLPLEFIKGKRSISDHMNESVNYIKYLQ
Links
Other
bHLH
family TFs
Other
Populus trichocarpa
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava43207.valid.m1
Manihot esculenta
cassava43207.valid.m1
I
0.914
Bostr.15774s0324
Boechera stricta
Bostr.15774s0324
I
0.914
Cagra.0277s0021
Capsella grandiflora
Cagra.0277s0021
I
0.914
Carubv10027166m.g
Capsella rubella
Carubv10027166m.g
I
0.914
Solyc06g035490.2
Solanum lycopersicum
Solyc06g035490.2
I
0.903
Pm019419
Prunus mume
Pm019419
I
0.902
cassava45968.m1
Manihot esculenta
cassava45968.m1
I
0.902
LjSGA_023375.1
Lotus japonicus
LjSGA_023375.1
I
0.902
AT5G51780
Arabidopsis thaliana
AT5G51780
I
0.894
Bo7g110280
Brassica oleracea
Bo7g110280
I
0.894
fgenesh2_kg.8__1059__AT5G51780.1
Arabidopsis lyrata
fgenesh2_kg.8__1059__AT5G51780.1
I
0.894
Thhalv10026341m.g
Eutrema salsugineum
Thhalv10026341m.g
I
0.894
Ca_22233
Cicer arietinum
Ca_22233
I
0.891
PK15358.1
Cannabis sativa
PK15358.1
I
0.891
cassava21379.m1
Manihot esculenta
cassava21379.m1
I
0.890
Ciclev10006628m.g
Citrus clementina
Ciclev10006628m.g
I
0.890
orange1.1g036406m.g
Citrus sinensis
orange1.1g036406m.g
I
0.890
TCM_016133
Theobroma cacao
TCM_016133
I
0.886
TCM_016134
Theobroma cacao
TCM_016134
I
0.886
MDP0000246258
Malus domestica
MDP0000246258
I
0.882
Bra019167
Brassica rapa
Bra019167
I
0.881
Thhalv10009922m.g
Eutrema salsugineum
Thhalv10009922m.g
I
0.881
Gorai.006G196500
Gossypium raimondii
Gorai.006G196500
I
0.880
GLYMA09G27630
Glycine max
GLYMA09G27630
N
0.879
MTR_0007s0380
Medicago truncatula
MTR_0007s0380
N
0.879
MTR_1g102370
Medicago truncatula
MTR_1g102370
N
0.878
30147.m014147
Ricinus communis
30147.m014147
N
0.878
AT4G25400
Arabidopsis thaliana
AT4G25400
D
0.873
Bostr.7867s0349
Boechera stricta
Bostr.7867s0349
I
0.873
Cagra.0568s0165
Capsella grandiflora
Cagra.0568s0165
N
0.872
Carubv10011792m.g
Capsella rubella
Carubv10011792m.g
N
0.872
GLYMA09G27610
Glycine max
GLYMA09G27610
I
0.871
GLYMA16G32610
Glycine max
GLYMA16G32610
I
0.871
PK11667.1
Cannabis sativa
PK11667.1
I
0.871
Bra022562
Brassica rapa
Bra022562
I
0.870
GLYMA16G32620
Glycine max
GLYMA16G32620
N
0.868
Bo2g048240
Brassica oleracea
Bo2g048240
I
0.859
Ciclev10006639m.g
Citrus clementina
Ciclev10006639m.g
N
0.858
GLYMA10G38630
Glycine max
GLYMA10G38630
N
0.855
GLYMA20G29120
Glycine max
GLYMA20G29120
N
0.855
evm.TU.supercontig_4.179
Carica papaya
evm.TU.supercontig_4.179
N
0.854
gene32346-v1.0-hybrid
Fragaria vesca
gene32346-v1.0-hybrid
N
0.854
Gorai.008G282300
Gossypium raimondii
Gorai.008G282300
I
0.852
Bostr.13671s0206
Boechera stricta
Bostr.13671s0206
I
0.851
gene13365-v1.0-hybrid
Fragaria vesca
gene13365-v1.0-hybrid
N
0.851
Thhalv10015297m.g
Eutrema salsugineum
Thhalv10015297m.g
I
0.846
Eucgr.F04119
Eucalyptus grandis
Eucgr.F04119
I
0.845
evm.TU.supercontig_4.181
Carica papaya
evm.TU.supercontig_4.181
I
0.844
SapurV1A.0881s0080
Salix purpurea
SapurV1A.0881s0080
N
0.843
Lus10027394.g
Linum usitatissimum
Lus10027394.g
N
0.842
MTR_0007s0330
Medicago truncatula
MTR_0007s0330
N
0.841