CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RPRC001881
(
Rhodnius prolixus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
RPRC001881
T044262_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Fer1
M03620_2.00
Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB
SELEX
Nitta et al.(2015)
Fer1_1
0.914
0.923
Fer1
M05990_2.00
Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD
B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475
0.914
0.923
Fer1
M05991_2.00
Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW
B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475
0.914
0.923
PTF1A
M04156_2.00
Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT
SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX
0.894
0.865
PTF1A
M08736_2.00
Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B
0.894
0.865
Ptf1a
M08757_2.00
Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A
0.894
0.865
Ptf1a
M09470_2.00
Mus musculus
NVVCASSTGB
VCASSTGBBN
Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459
0.894
0.865
PTF1A
M04157_2.00
Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT
SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX
0.894
0.865
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RPRC001881-PA
bHLH
87
139
QRQAANLRERRRMQSINEAFDGLRAHIPTLPYEKRLSKVDTLKLAIGYIKFLS
Links
Other
bHLH
family TFs
Other
Rhodnius prolixus
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASU_03674
Ascaris suum
ASU_03674
N
Bm10772
Brugia malayi
Bm10772
N
Bm12257
Brugia malayi
Bm12257
N
DME_0000351401
Dracunculus medinensis
DME_0000351401
N
EEL_0000061001
Elaeophora elaphi
EEL_0000061001
N
LOAG_03194
Loa loa
LOAG_03194
N
nAv.1.0.1.g00243
Acanthocheilonema viteae
nAv.1.0.1.g00243
N
nDi.2.2.2.g09786
Dirofilaria immitis
nDi.2.2.2.g09786
N
nLs.2.1.2.g06342
Litomosoides sigmodontis
nLs.2.1.2.g06342
N
nOo.2.0.1.g07545
Onchocerca ochengi
nOo.2.0.1.g07545
N
OFLC_0000930401
Onchocerca flexuosa
OFLC_0000930401
N
TCLT_0000680401
Thelazia callipaeda
TCLT_0000680401
N
TCNE_0000049101
Toxocara canis
TCNE_0000049101
N
WBGene00238995
Onchocerca volvulus
WBGene00238995
N
WUBG_08375
Wuchereria bancrofti
WUBG_08375
N