BIM3 (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 scaffold_704174.1 T044520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM3
M01711_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8591 		0.914 1.000
BIM3
M06741_2.00 		Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH		 Dap-seq
OMalley et al.(2016)
BIM3_col_a 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_704174.1 bHLH 34 86

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BIM3 Arabidopsis thaliana AT5G38860 D 0.914
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I 0.914
Carubv10006445m.g Capsella rubella Carubv10006445m.g I 0.914
Bostr.17775s0015 Boechera stricta Bostr.17775s0015 I 0.890
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.861
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.861
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.861
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.861
TCM_019015 Theobroma cacao TCM_019015 I 0.861
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.861
Ca_22043 Cicer arietinum Ca_22043 I 0.861
29790.m000843 Ricinus communis 29790.m000843 I 0.861
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.861
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.861
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.861
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.861
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.861
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.861
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.861
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.861
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.861
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.861
PK00238.1 Cannabis sativa PK00238.1 I 0.861
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.858
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.840
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.838
Si013622m.g Setaria italica Si013622m.g I 0.838
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.838
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.838