Si012401m.g (Setaria italica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Si012401m.g T044719_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.841 0.429
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.841 0.429
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.841 0.429
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si012401m bHLH 302 350

Links

Other bHLH family TFs
Other Setaria italica TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.914
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.914
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.914
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.914
Si000845m.g Setaria italica Si000845m.g I 0.914
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.902
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.890
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.890
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.890
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.890
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.890
F775_10624 Aegilops tauschii F775_10624 N 0.890
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.890
OB04G28350 Oryza brachyantha OB04G28350 N 0.890
OB04G28380 Oryza brachyantha OB04G28380 N 0.890
OB04G28390 Oryza brachyantha OB04G28390 N 0.890
OBART01G20350 Oryza barthii OBART01G20350 N 0.890
OBART04G21320 Oryza barthii OBART04G21320 N 0.890
OBART04G21370 Oryza barthii OBART04G21370 N 0.890
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.890
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.890
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.890
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.890
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.890
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.890
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.890
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.890
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.890
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.890
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.890
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.890
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.890
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.890
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.890
OS04G0557200 Oryza sativa OS04G0557200 N 0.890
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.890
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.890
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.890
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.890
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.888
OB01G30110 Oryza brachyantha OB01G30110 N 0.888
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.888
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.888
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.888
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.888
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.888
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.888
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.888
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.887
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.885
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.885
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.885
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.880
OS04G0557800 Oryza sativa OS04G0557800 N 0.878
F775_18830 Aegilops tauschii F775_18830 N 0.877
F775_19744 Aegilops tauschii F775_19744 N 0.877
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.877
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.877
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.875
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.869
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.868
29739.m003684 Ricinus communis 29739.m003684 I 0.868
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.868
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.865
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.863
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.863
TCM_037645 Theobroma cacao TCM_037645 I 0.863
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.858
Sb06g016380 Sorghum bicolor Sb06g016380 N 0.856
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.855
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.855
F775_11347 Aegilops tauschii F775_11347 I 0.855
F775_14190 Aegilops tauschii F775_14190 I 0.855
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.855
OBART06G06000 Oryza barthii OBART06G06000 I 0.855
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.855
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.855
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.855
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.855
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.855
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.855
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.855
OS06G0193400 Oryza sativa OS06G0193400 I 0.855
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.855
TCM_037455 Theobroma cacao TCM_037455 I 0.855
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.855
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.855
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.855
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.855
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.855
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.855
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.855
PK08539.1 Cannabis sativa PK08539.1 I 0.853
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.851
BRADI3G54070 Brachypodium distachyon BRADI3G54070 I 0.850
Traes_6BL_AEB13ECDE Triticum aestivum Traes_6BL_AEB13ECDE I 0.850
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.847
F775_11371 Aegilops tauschii F775_11371 I 0.847
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.847
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.847
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.847
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.847
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.847
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.847
Pm002304 Prunus mume Pm002304 I 0.847
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.847
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.844
PGSC0003DMG402030621 Solanum tuberosum PGSC0003DMG402030621 I 0.843
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.843
Eucgr.H02385 Eucalyptus grandis Eucgr.H02385 I 0.843
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.843
PK01364.1 Cannabis sativa PK01364.1 I 0.843
PRUPE_ppa017709mg Prunus persica PRUPE_ppa017709mg I 0.842
TCM_004959 Theobroma cacao TCM_004959 I 0.842
Pm027004 Prunus mume Pm027004 I 0.842
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.842
BIM2 Arabidopsis thaliana AT1G69010 D 0.841
Bo2g062560 Brassica oleracea Bo2g062560 I 0.841
Bo6g108530 Brassica oleracea Bo6g108530 I 0.841
Bra004355 Brassica rapa Bra004355 I 0.841
Bra038332 Brassica rapa Bra038332 I 0.841
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.841
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.841
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.841
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.841
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.841
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.841
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.841
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.841
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.841
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.841
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.841
POPTR_0014s06190 Populus trichocarpa POPTR_0014s06190 I 0.841
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.841
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.841
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.841
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.841
TCM_011433 Theobroma cacao TCM_011433 I 0.841
TCM_019015 Theobroma cacao TCM_019015 I 0.841
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.841
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.841
Ca_22043 Cicer arietinum Ca_22043 I 0.841
Cla022382 Citrullus lanatus Cla022382 I 0.841
29790.m000843 Ricinus communis 29790.m000843 I 0.841
30138.m003899 Ricinus communis 30138.m003899 I 0.841
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.841
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.841
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.841
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.841
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.841
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.841
mgf011829m Mimulus guttatus mgf011829m I 0.841
mgf013208m Mimulus guttatus mgf013208m I 0.841
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.841
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.841
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.841
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.841
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.841
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.841
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.841
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.841
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.841
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.841
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.841
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.841
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.841
Lus10028175.g Linum usitatissimum Lus10028175.g I 0.841
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.841
MDP0000261293 Malus domestica MDP0000261293 I 0.841
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.841
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.841
SapurV1A.0248s0190 Salix purpurea SapurV1A.0248s0190 I 0.841
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.841
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.841
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.841
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.841
PK00238.1 Cannabis sativa PK00238.1 I 0.841
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.840
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.839