CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_000204
(
Theobroma cacao
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
TCM_000204
T045324_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK18401.1
M01126_2.00
Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN
PBM
Lambert et al.(2019)
pTH11272
0.911
0.863
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOX90849
bHLH
40
90
RKVQKADREKLRRDRLNEQFLELGNTLDPDRPKNDKATILMDTIQMLKDLT
Links
Other
bHLH
family TFs
Other
Theobroma cacao
TFs
65 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00041p00193340
Amborella trichopoda
AMTR_s00041p00193340
I
0.914
GLYMA08G15740
Glycine max
GLYMA08G15740
I
0.914
GSMUA_Achr11G16630_001
Musa acuminata
GSMUA_Achr11G16630_001
I
0.914
PRUPE_ppa008347mg
Prunus persica
PRUPE_ppa008347mg
I
0.914
bHLH121
Vitis vinifera
VIT_03s0038g01790
I
0.914
Pm021043
Prunus mume
Pm021043
I
0.914
29830.m001386
Ricinus communis
29830.m001386
I
0.914
Lus10028456.g
Linum usitatissimum
Lus10028456.g
I
0.914
Lus10041908.g
Linum usitatissimum
Lus10041908.g
I
0.914
MDP0000275844
Malus domestica
MDP0000275844
I
0.914
POPTR_0004s17540
Populus trichocarpa
POPTR_0004s17540
I
0.911
PRUPE_ppa008596mg
Prunus persica
PRUPE_ppa008596mg
I
0.911
bHLH11
Vitis vinifera
VIT_04s0023g03430
I
0.911
Cla014511
Citrullus lanatus
Cla014511
I
0.911
Pm026758
Prunus mume
Pm026758
I
0.911
29711.m000322
Ricinus communis
29711.m000322
I
0.911
cassava24935.valid.m1
Manihot esculenta
cassava24935.valid.m1
I
0.911
cassava24936.valid.m1
Manihot esculenta
cassava24936.valid.m1
I
0.911
Cucsa.043580
Cucumis sativus
Cucsa.043580
I
0.911
Eucgr.I02346
Eucalyptus grandis
Eucgr.I02346
I
0.911
Gorai.005G252200
Gossypium raimondii
Gorai.005G252200
I
0.911
PK18401.1
Cannabis sativa
PK18401.1
D
0.911
AMTR_s00070p00188780
Amborella trichopoda
AMTR_s00070p00188780
I
0.903
BGIOSGA008112
Oryza indica
BGIOSGA008112
I
0.902
OPUNC02G13570
Oryza punctata
OPUNC02G13570
I
0.902
OS02G0433600
Oryza sativa
OS02G0433600
I
0.902
TCM_006692
Theobroma cacao
TCM_006692
I
0.900
Ciclev10028783m.g
Citrus clementina
Ciclev10028783m.g
I
0.900
Eucgr.G01757
Eucalyptus grandis
Eucgr.G01757
I
0.900
orange1.1g022288m.g
Citrus sinensis
orange1.1g022288m.g
I
0.900
SapurV1A.0117s0370
Salix purpurea
SapurV1A.0117s0370
I
0.898
GLYMA12G02740
Glycine max
GLYMA12G02740
I
0.893
Cucsa.169240
Cucumis sativus
Cucsa.169240
I
0.890
GLYMA15G29630
Glycine max
GLYMA15G29630
I
0.889
mgf017107m
Mimulus guttatus
mgf017107m
I
0.888
gene07391-v1.0-hybrid
Fragaria vesca
gene07391-v1.0-hybrid
I
0.887
SapurV1A.1150s0140
Salix purpurea
SapurV1A.1150s0140
I
0.887
MTR_4g075480
Medicago truncatula
MTR_4g075480
I
0.879
POPTR_0005s11550
Populus trichocarpa
POPTR_0005s11550
I
0.879
estExt_fgenesh1_pg.C_1360017
Physcomitrella patens
estExt_fgenesh1_pg.C_1360017
I
0.879
fgenesh1_pg.scaffold_31000088
Physcomitrella patens
fgenesh1_pg.scaffold_31000088
I
0.879
evm.TU.supercontig_6.255
Carica papaya
evm.TU.supercontig_6.255
I
0.879
GLYMA07G26910
Glycine max
GLYMA07G26910
I
0.878
PGSC0003DMG400001594
Solanum tuberosum
PGSC0003DMG400001594
I
0.876
POPTR_0009s13220
Populus trichocarpa
POPTR_0009s13220
I
0.876
Solyc01g111130.2
Solanum lycopersicum
Solyc01g111130.2
I
0.876
gene14608-v1.0-hybrid
Fragaria vesca
gene14608-v1.0-hybrid
I
0.876
GRMZM2G114444
Zea mays
GRMZM2G114444
I
0.866
LPERR02G12290
Leersia perrieri
LPERR02G12290
I
0.866
OB0197G10010
Oryza brachyantha
OB0197G10010
I
0.866
Sb03g028030
Sorghum bicolor
Sb03g028030
I
0.866
Si017804m.g
Setaria italica
Si017804m.g
I
0.866
Pavir.Aa02015
Panicum virgatum
Pavir.Aa02015
I
0.866
Cla001685
Citrullus lanatus
Cla001685
I
0.864
evm.TU.supercontig_17.155
Carica papaya
evm.TU.supercontig_17.155
I
0.851
BRADI3G11520
Brachypodium distachyon
BRADI3G11520
I
0.842
Pavir.Ab01730
Panicum virgatum
Pavir.Ab01730
I
0.842
BHLH121
Arabidopsis thaliana
AT3G19860
I
0.840
Bo1g112310
Brassica oleracea
Bo1g112310
I
0.840
Bra038236
Brassica rapa
Bra038236
I
0.840
bHLH121
Arabidopsis lyrata
fgenesh2_kg.3__2204__AT3G19860.1
I
0.840
Bostr.19424s0675
Boechera stricta
Bostr.19424s0675
I
0.840
Cagra.0316s0082
Capsella grandiflora
Cagra.0316s0082
I
0.840
Thhalv10021271m.g
Eutrema salsugineum
Thhalv10021271m.g
I
0.840
Thhalv10023630m.g
Eutrema salsugineum
Thhalv10023630m.g
I
0.840