CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Brh_R012765
(
Buceros rhinoceros
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Brh_R012765
T046741_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Twist2
M01718_2.00
Mus musculus
NACATATGKN
NMCATATGTN
PBM
Weirauch et al.(2014)
pTH5033
0.914
1.000
TWIST1
M08052_2.00
Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN
ChIP-seq
Mathelier et al.(2014)
MA1123.1
0.914
0.962
TWIST1
M08722_2.00
Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW
Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A
0.914
0.962
Twist1
M08766_2.00
Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW
Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B
0.914
0.962
TWIST1
M09831_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6_01
0.914
0.962
TWIST1
M09832_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6
0.914
0.962
twi
M03605_2.00
Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK
SELEX
Nitta et al.(2015)
twi_1
0.859
0.827
twi
M03606_2.00
Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK
SELEX
Nitta et al.(2015)
twi_2
0.859
0.827
twi
M05955_2.00
Drosophila melanogaster
VCCAGATGTB
VACATCTGGB
B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900
0.859
0.827
twi
M05956_2.00
Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN
B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900
0.859
0.827
twi
M07538_2.00
Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN
DNaseI footprinting
Mathelier et al.(2014)
MA0249.1
0.859
0.827
twi
M09657_2.00
Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT
Misc
Kulakovskiy et al.(2009)
twi
0.859
0.827
twi
M09892_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TWI_Q6
0.859
0.827
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Brh_R012765
bHLH
67
118
QRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLY
Links
Other
bHLH
family TFs
Other
Buceros rhinoceros
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29738.m001050
Ricinus communis
29738.m001050
I
AMTR_s00007p00238950
Amborella trichopoda
AMTR_s00007p00238950
I
Aquca_002_01106
Aquilegia coerulea
Aquca_002_01106
I
Aquca_026_00225
Aquilegia coerulea
Aquca_026_00225
I
ARF14
Arabidopsis thaliana
AT3G25730
D
BGIOSGA000982
Oryza indica
BGIOSGA000982
I
BGIOSGA002747
Oryza indica
BGIOSGA002747
I
BGIOSGA002748
Oryza indica
BGIOSGA002748
I
BGIOSGA002753
Oryza indica
BGIOSGA002753
I
BGIOSGA020315
Oryza indica
BGIOSGA020315
I
Bo2g061320
Brassica oleracea
Bo2g061320
I
Bo2g138650
Brassica oleracea
Bo2g138650
I
Bo3g138550
Brassica oleracea
Bo3g138550
I
Bo5g015210
Brassica oleracea
Bo5g015210
I
Bo5g043120
Brassica oleracea
Bo5g043120
I
Bostr.0556s0243
Boechera stricta
Bostr.0556s0243
I
Bostr.10273s0485
Boechera stricta
Bostr.10273s0485
I
Bostr.12659s0398
Boechera stricta
Bostr.12659s0398
I
Bostr.13671s0120
Boechera stricta
Bostr.13671s0120
I
Bra011002
Brassica rapa
Bra011002
I
Bra019821
Brassica rapa
Bra019821
I
Bra024735
Brassica rapa
Bra024735
I
Bra026509
Brassica rapa
Bra026509
I
Bra026917
Brassica rapa
Bra026917
I
Bra038346
Brassica rapa
Bra038346
I
BRADI2G02710
Brachypodium distachyon
BRADI2G02710
I
BRADI2G02720
Brachypodium distachyon
BRADI2G02720
I
BRADI2G17610
Brachypodium distachyon
BRADI2G17610
I
BRADI2G47220
Brachypodium distachyon
BRADI2G47220
I
Cagra.1157s0007
Capsella grandiflora
Cagra.1157s0007
I
Cagra.3501s0173
Capsella grandiflora
Cagra.3501s0173
I
Carubv10009612m.g
Capsella rubella
Carubv10009612m.g
I
Carubv10019207m.g
Capsella rubella
Carubv10019207m.g
I
Carubv10020536m.g
Capsella rubella
Carubv10020536m.g
I
cassava12324.valid.m1
Manihot esculenta
cassava12324.valid.m1
I
cassava43329.valid.m1
Manihot esculenta
cassava43329.valid.m1
I
Ca_08436
Cicer arietinum
Ca_08436
I
Ca_24123
Cicer arietinum
Ca_24123
I
Ciclev10031846m.g
Citrus clementina
Ciclev10031846m.g
I
Cla000872
Citrullus lanatus
Cla000872
I
Cla020675
Citrullus lanatus
Cla020675
I
Cucsa.147340
Cucumis sativus
Cucsa.147340
I
Cucsa.283870
Cucumis sativus
Cucsa.283870
I
EDF3
Arabidopsis lyrata
fgenesh2_kg.5__327__AT3G25730.1
I
Eucgr.B03048
Eucalyptus grandis
Eucgr.B03048
I
F775_20035
Aegilops tauschii
F775_20035
N
gene03871-v1.0-hybrid
Fragaria vesca
gene03871-v1.0-hybrid
I
GLYMA01G22260
Glycine max
GLYMA01G22260
I
GLYMA02G11060
Glycine max
GLYMA02G11060
I
GLYMA10G34760
Glycine max
GLYMA10G34760
I
GLYMA20G32730
Glycine max
GLYMA20G32730
I
Gorai.005G138100
Gossypium raimondii
Gorai.005G138100
I
Gorai.008G185900
Gossypium raimondii
Gorai.008G185900
I
Gorai.013G080000
Gossypium raimondii
Gorai.013G080000
I
GRMZM2G059939
Zea mays
GRMZM2G059939
I
GRMZM2G159592
Zea mays
GRMZM2G159592
I
GRMZM2G169654
Zea mays
GRMZM2G169654
I
GSMUA_Achr1G21250_001
Musa acuminata
GSMUA_Achr1G21250_001
I
GSMUA_Achr2G22560_001
Musa acuminata
GSMUA_Achr2G22560_001
I
GSMUA_Achr3G21100_001
Musa acuminata
GSMUA_Achr3G21100_001
I
GSMUA_Achr4G06710_001
Musa acuminata
GSMUA_Achr4G06710_001
I
GSMUA_Achr5G09950_001
Musa acuminata
GSMUA_Achr5G09950_001
I
GSMUA_Achr6G01420_001
Musa acuminata
GSMUA_Achr6G01420_001
I
LPERR01G02360
Leersia perrieri
LPERR01G02360
I
LPERR01G02380
Leersia perrieri
LPERR01G02380
I
LPERR01G23470
Leersia perrieri
LPERR01G23470
I
LPERR05G20600
Leersia perrieri
LPERR05G20600
I
Lus10021707.g
Linum usitatissimum
Lus10021707.g
I
Lus10041487.g
Linum usitatissimum
Lus10041487.g
I
MDP0000128924
Malus domestica
MDP0000128924
I
MDP0000939633
Malus domestica
MDP0000939633
I
mgf019592m
Mimulus guttatus
mgf019592m
I
MLOC_5512
Hordeum vulgare
MLOC_5512
I
MLOC_56567
Hordeum vulgare
MLOC_56567
I
MLOC_63261
Hordeum vulgare
MLOC_63261
I
MLOC_75135
Hordeum vulgare
MLOC_75135
I
MLOC_7940
Hordeum vulgare
MLOC_7940
I
MTR_1g093600
Medicago truncatula
MTR_1g093600
I
MTR_5g053920
Medicago truncatula
MTR_5g053920
I
OB01G12600
Oryza brachyantha
OB01G12600
I
OBART01G02610
Oryza barthii
OBART01G02610
I
OBART01G27360
Oryza barthii
OBART01G27360
I
OGLUM01G02850
Oryza glumaepatula
OGLUM01G02850
I
OGLUM01G31260
Oryza glumaepatula
OGLUM01G31260
I
OGLUM05G26380
Oryza glumaepatula
OGLUM05G26380
I
OMERI01G02480
Oryza meridionalis
OMERI01G02480
I
OMERI01G02500
Oryza meridionalis
OMERI01G02500
I
OMERI01G25110
Oryza meridionalis
OMERI01G25110
I
OMERI05G22110
Oryza meridionalis
OMERI05G22110
I
ONIVA01G02970
Oryza nivara
ONIVA01G02970
I
ONIVA01G02990
Oryza nivara
ONIVA01G02990
I
ONIVA01G31290
Oryza nivara
ONIVA01G31290
I
ONIVA05G26000
Oryza nivara
ONIVA05G26000
I
OPUNC01G02240
Oryza punctata
OPUNC01G02240
I
OPUNC01G02270
Oryza punctata
OPUNC01G02270
N
OPUNC01G27280
Oryza punctata
OPUNC01G27280
I
OPUNC05G22370
Oryza punctata
OPUNC05G22370
I
orange1.1g017035m.g
Citrus sinensis
orange1.1g017035m.g
I
ORGLA01G0022400
Oryza glaberrima
ORGLA01G0022400
I
ORGLA01G0022600
Oryza glaberrima
ORGLA01G0022600
I
ORGLA01G0225300
Oryza glaberrima
ORGLA01G0225300
I
ORUFI01G02660
Oryza rufipogon
ORUFI01G02660
I
ORUFI01G02680
Oryza rufipogon
ORUFI01G02680
I
ORUFI01G30390
Oryza rufipogon
ORUFI01G30390
I
OS01G0140700
Oryza sativa
OS01G0140700
I
OS01G0141000
Oryza sativa
OS01G0141000
I
OS01G0693400
Oryza sativa
OS01G0693400
I
OS05G0549800
Oryza sativa
OS05G0549800
I
Pavir.Ca01165
Panicum virgatum
Pavir.Ca01165
I
Pavir.Ca01826
Panicum virgatum
Pavir.Ca01826
I
Pavir.Ea00549
Panicum virgatum
Pavir.Ea00549
I
Pavir.Ea02092
Panicum virgatum
Pavir.Ea02092
I
Pavir.Eb00701
Panicum virgatum
Pavir.Eb00701
I
Pavir.Eb00702
Panicum virgatum
Pavir.Eb00702
I
Pavir.Eb02845
Panicum virgatum
Pavir.Eb02845
I
Pavir.J00384
Panicum virgatum
Pavir.J00384
I
Pavir.J13012
Panicum virgatum
Pavir.J13012
I
Pavir.J23476
Panicum virgatum
Pavir.J23476
I
PGSC0003DMG400000811
Solanum tuberosum
PGSC0003DMG400000811
I
PGSC0003DMG400007458
Solanum tuberosum
PGSC0003DMG400007458
I
PK15652.1
Cannabis sativa
PK15652.1
I
Pm029015
Prunus mume
Pm029015
I
POPTR_0008s11600
Populus trichocarpa
POPTR_0008s11600
I
POPTR_0010s13930
Populus trichocarpa
POPTR_0010s13930
I
PRUPE_ppa006243mg
Prunus persica
PRUPE_ppa006243mg
I
RAV1
Arabidopsis thaliana
AT1G13260
D
RAV1
Arabidopsis lyrata
scaffold_101479.1
I
RAV2
Arabidopsis thaliana
AT1G68840
D
RAV2
Arabidopsis lyrata
fgenesh2_kg.2__1141__AT1G68840.1
I
SapurV1A.0079s0450
Salix purpurea
SapurV1A.0079s0450
I
SapurV1A.1001s0020
Salix purpurea
SapurV1A.1001s0020
I
SapurV1A.3302s0010
Salix purpurea
SapurV1A.3302s0010
I
Sb03g006590
Sorghum bicolor
Sb03g006590
I
Sb03g031860
Sorghum bicolor
Sb03g031860
I
Sb09g004140
Sorghum bicolor
Sb09g004140
N
Sb09g027530
Sorghum bicolor
Sb09g027530
I
Si001909m.g
Setaria italica
Si001909m.g
I
Si004045m.g
Setaria italica
Si004045m.g
I
Si024576m.g
Setaria italica
Si024576m.g
I
Solyc04g007000.1
Solanum lycopersicum
Solyc04g007000.1
I
Solyc05g009790.1
Solanum lycopersicum
Solyc05g009790.1
I
TCM_011862
Theobroma cacao
TCM_011862
I
TEM1
Arabidopsis lyrata
scaffold_102941.1
I
Thhalv10004508m.g
Eutrema salsugineum
Thhalv10004508m.g
I
Thhalv10007983m.g
Eutrema salsugineum
Thhalv10007983m.g
I
Thhalv10010019m.g
Eutrema salsugineum
Thhalv10010019m.g
I
Thhalv10019566m.g
Eutrema salsugineum
Thhalv10019566m.g
I
TRAES3BF062600010CFD_g
Triticum aestivum
TRAES3BF062600010CFD_g
I
TRAES3BF062700040CFD_g
Triticum aestivum
TRAES3BF062700040CFD_g
I
TRAES3BF098200010CFD_g
Triticum aestivum
TRAES3BF098200010CFD_g
I
TRAES3BF098300010CFD_g
Triticum aestivum
TRAES3BF098300010CFD_g
I
TRAES3BF108500010CFD_g
Triticum aestivum
TRAES3BF108500010CFD_g
I
Traes_3B_90BE2090B
Triticum aestivum
Traes_3B_90BE2090B
I
Traes_3B_DF7E924991
Triticum aestivum
Traes_3B_DF7E924991
I
TRIUR3_24851
Triticum urartu
TRIUR3_24851
I
TRIUR3_27886
Triticum urartu
TRIUR3_27886
I
VIT_01s0011g03070
Vitis vinifera
VIT_01s0011g03070
I