Gfo_R007595 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R007595 T047332_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.914 1.000
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.914 1.000
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.914 1.000
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.914 1.000
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.914 1.000
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.914 1.000
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.914 1.000
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.942
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.942
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.942
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.886 0.923
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.886 0.923
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.886 0.923
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.886 0.923
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.886 0.923
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.886 0.923
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.886 0.923
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.886 0.923
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.886 0.923
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.886 0.923
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.886 0.923
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.886 0.923
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.886 0.923
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.886 0.923
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.886 0.846
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.886 0.846
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.886 0.846
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.884 0.885
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.884 0.885
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.884 0.885
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.884 0.885
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.884 0.885
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.884 0.885
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.884 0.885
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.884 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R007595 bHLH 538 591

Links

Other bHLH family TFs
Other Geospiza fortis TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
15331_YLR403W Saccharomyces paradoxus 15331_YLR403W I
15714_YLR403W Saccharomyces mikatae 15714_YLR403W I
17461_YLR403W Saccharomyces bayanus 17461_YLR403W I
A1O1_07090 Capronia coronata A1O1_07090 I
A1O3_04264 Capronia epimyces A1O3_04264 I
A1O5_08144 Cladophialophora psammophila A1O5_08144 N
AACERI_AaceriAER071W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER071W I
AB10302.1 Alternaria brassicicola AB10302.1 I
ACRE_057400 Acremonium chrysogenum ACRE_057400 I
AGOS_AER071W Ashbya gossypii AGOS_AER071W I
AOL_s00004g580 Arthrobotrys oligospora AOL_s00004g580 I
AUEXF2481DRAFT_311834 Aureobasidium subglaciale AUEXF2481DRAFT_311834 I
AWRI1499_3112 Brettanomyces bruxellensis AWRI1499_3112 I
BAUCODRAFT_120448 Baudoinia compniacensis BAUCODRAFT_120448 I
BBA_01441 Beauveria bassiana BBA_01441 I
BDDG_09794 Blastomyces dermatitidis BDDG_09794 I
BN7_5712 Wickerhamomyces ciferrii BN7_5712 I
ACLA_020620 Aspergillus clavatus CADACLAG00002717 I
CADAFLAG00002691 Aspergillus flavus CADAFLAG00002691 I
AFUA_1G14750 Aspergillus fumigatus CADAFUAG00006891 I
CADANGAG00001277 Aspergillus niger CADANGAG00001277 I
ANIA_00817 Aspergillus nidulans CADANIAG00001843 I
CADAORAG00001127 Aspergillus oryzae CADAORAG00001127 I
ATEG_00691 Aspergillus terreus CADATEAG00005769 I
NFIA_010650 Neosartorya fischeri CADNFIAG00001974 I
CAGL0D00682g Candida glabrata CAGL0D00682g I
CAGL0M09955g Candida glabrata CAGL0M09955g I
CANTEDRAFT_136954 Candida tenuis CANTEDRAFT_136954 I
CaO19.13374 Candida albicans CaO19.13374 I
CaO19.5953 Candida albicans CaO19.5953 I
CCM_05399 Cordyceps militaris CCM_05399 I
CD36_84830 Candida dubliniensis CD36_84830 I
CGGC5_10732 Colletotrichum gloeosporioides CGGC5_10732 I
CH063_11027 Colletotrichum higginsianum CH063_11027 I
CHGG_01658 Chaetomium globosum CHGG_01658 I
CIMG_03255 Coccidioides immitis CIMG_03255 I
CLUG_05237 Candida lusitaniae CLUG_05237 I
CLUG_05237 Clavispora lusitaniae CLUG_05237 I
CMQ_3345 Grosmannia clavigera CMQ_3345 N
Cob_13393 Colletotrichum orbiculare Cob_13393 I
COCC4DRAFT_141470 Bipolaris maydis COCC4DRAFT_141470 I
COCCADRAFT_35826 Bipolaris zeicola COCCADRAFT_35826 I
COCMIDRAFT_8853 Bipolaris oryzae COCMIDRAFT_8853 I
COCSADRAFT_185038 Bipolaris sorokiniana COCSADRAFT_185038 I
COCVIDRAFT_42340 Bipolaris victoriae COCVIDRAFT_42340 I
CORT_0C01760 Candida orthopsilosis CORT_0C01760 I
CPC735_009250 Coccidioides posadasii CPC735_009250 I
CPUR_03627 Claviceps purpurea CPUR_03627 I
CSUB01_03330 Colletotrichum sublineola CSUB01_03330 I
CTRG_02503 Candida tropicalis CTRG_02503 I
DEHA2D11748g Debaryomyces hansenii DEHA2D11748g I
DOTSEDRAFT_51823 Dothistroma septosporum DOTSEDRAFT_51823 I
Ecym_3253 Eremothecium cymbalariae Ecym_3253 I
estExt_fgenesh1_pg.C_170193 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_170193 I
estExt_fgenesh1_pg.C_90338 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_90338 I
estExt_fgenesh1_pm.C_40561 Cryphonectria parasitica estExt_fgenesh1_pm.C_40561 I
estExt_fgenesh1_pm.C_chr_10304 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_10304 I
estExt_gwp_genewisePlus_worm.C_chr_1.20975 Pichia stipitis estExt_gwp_genewisePlus_worm.C_chr_1.20975 I
EURHEDRAFT_512336 Aspergillus ruber EURHEDRAFT_512336 I
F503_05202 Ophiostoma piceae uamh F503_05202 N
FFUJ_00586 Fusarium fujikuroi FFUJ_00586 I
fgenesh1_pg.sca_1_chr1_3_0000912 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0000912 I
fgenesh1_pm.00042_#_268 Aspergillus carbonarius fgenesh1_pm.00042_#_268 I
FGRRES_15767 Fusarium graminearum FGRRES_15767 I
FOXG_00980 Fusarium oxysporum FOXG_00980 I
FPSE_00633 Fusarium pseudograminearum FPSE_00633 I
FVEG_00534 Fusarium verticillioides FVEG_00534 I
G210_2438 Candida maltosa G210_2438 I
GGTG_10100 Gaeumannomyces graminis GGTG_10100 I
GLRG_00700 Colletotrichum graminicola GLRG_00700 I
GNLVRS01_PISO0K03222g Millerozyma farinosa GNLVRS01_PISO0K03222g I
GNLVRS01_PISO0L03223g Millerozyma farinosa GNLVRS01_PISO0L03223g I
GSTUM_00008521001 Tuber melanosporum GSTUM_00008521001 I
H072_2321 Dactylellina haptotyla H072_2321 I
H101_05070 Trichophyton interdigitale H101_05070 I
HCBG_01463 Histoplasma capsulatum HCBG_01463 I
HMPREF1120_04491 Exophiala dermatitidis HMPREF1120_04491 I
HMPREF1624_03059 Sporothrix schenckii HMPREF1624_03059 N
HPODL_00600 Ogataea parapolymorpha HPODL_00600 I
JL09_g4045 Pichia kudriavzevii JL09_g4045 I
KAFR_0A05850 Kazachstania africana KAFR_0A05850 I
KLTH0D14718g Lachancea thermotolerans KLTH0D14718g I
KLTH0D14718g Kluyveromyces thermotolerans KLTH0D14718g I
KNAG_0B06200 Kazachstania naganishii KNAG_0B06200 I
Kpol_1002p4 Vanderwaltozyma polyspora Kpol_1002p4 I
Kpol_1055p71 Vanderwaltozyma polyspora Kpol_1055p71 I
KUCA_T00000649001 Kuraishia capsulata KUCA_T00000649001 I
Kwal_4156 Kluyveromyces waltii Kwal_4156 I
LALA0_S03e06964g Lachancea lanzarotensis LALA0_S03e06964g I
LELG_02885 Lodderomyces elongisporus LELG_02885 I
LEMA_P092020.1 Leptosphaeria maculans LEMA_P092020.1 I
M437DRAFT_61697 Aureobasidium melanogenum M437DRAFT_61697 I
M438DRAFT_147774 Aureobasidium pullulans M438DRAFT_147774 I
M7I_6817 Glarea lozoyensis M7I_6817 I
MAM_05286 Metarhizium album MAM_05286 I
MAPG_03070 Magnaporthe poae MAPG_03070 I
MCYG_06487 Microsporum canis MCYG_06487 I
MGG_01209 Magnaporthe oryzae MGG_01209 I
MGYG_06954 Microsporum gypseum MGYG_06954 I
MPH_04552 Macrophomina phaseolina MPH_04552 I
MYCFIDRAFT_215154 Pseudocercospora fijiensis MYCFIDRAFT_215154 I
Mycgr3G98356 Zymoseptoria tritici Mycgr3G98356 I
NCAS_0A02570 Naumovozyma castellii NCAS_0A02570 I
NCAS_0J01590 Naumovozyma castellii NCAS_0J01590 I
NDAI_0D04320 Naumovozyma dairenensis NDAI_0D04320 I
NDAI_0J02360 Naumovozyma dairenensis NDAI_0J02360 I
NechaG75301 Fusarium solani NechaG75301 I
OCS_02976 Ophiocordyceps sinensis OCS_02976 I
OIDMADRAFT_149888 Oidiodendron maius OIDMADRAFT_149888 I
PAAG_05441 Paracoccidioides sp lutzii PAAG_05441 I
PABG_05941 Paracoccidioides brasiliensis PABG_05941 I
PAS_chr4_0169 Komagataella pastoris PAS_chr4_0169 I
Pc16g13790 Penicillium chrysogenum Pc16g13790 I
PCH_Pc16g13790 Penicillium rubens PCH_Pc16g13790 I
PDE_00574 Penicillium oxalicum PDE_00574 I
PDIP_66170 Penicillium digitatum PDIP_66170 I
PEX1_093760 Penicillium expansum PEX1_093760 I
PFICI_06906 Pestalotiopsis fici PFICI_06906 I
PGUG_02203 Candida guilliermondii PGUG_02203 I
PGUG_02203 Meyerozyma guilliermondii PGUG_02203 I
PICST_81274 Scheffersomyces stipitis PICST_81274 I
PITC_047260 Penicillium italicum PITC_047260 I
PMAA_073990 Talaromyces marneffei PMAA_073990 I
PMAA_073990 Penicillium marneffei PMAA_073990 I
PNEG_01028 Pneumocystis murina PNEG_01028 I
PODANS_1_4460 Podospora anserina PODANS_1_4460 I
PredSwiss_CON3163.1 Pneumocystis carinii PredSwiss_CON3163.1 I
PredSwiss_EST880.1 Pneumocystis carinii PredSwiss_EST880.1 I
PTRG_04689 Pyrenophora triticirepentis PTRG_04689 I
PTT_09059 Pyrenophora teres PTT_09059 I
PV05_07500 Exophiala xenobiotica PV05_07500 N
PV06_07675 Exophiala oligosperma PV06_07675 I
PV07_01574 Cladophialophora immunda PV07_01574 N
PV09_00537 Verruconis gallopava PV09_00537 I
PV10_03433 Exophiala mesophila PV10_03433 N
PV11_04834 Exophiala sideris PV11_04834 N
PVAR5_1442 Byssochlamys spectabilis PVAR5_1442 I
S40285_08847 Stachybotrys chlorohalonata S40285_08847 I
S40288_02803 Stachybotrys chartarum S40288_02803 I
SAPIO_CDS1423 Scedosporium apiospermum SAPIO_CDS1423 I
Scas_Contig719.24 Saccharomyces castellii Scas_Contig719.24 I
SETTUDRAFT_87041 Setosphaeria turcica SETTUDRAFT_87041 I
SJAG_03241 Schizosaccharomyces japonicus SJAG_03241 I
SKUD_206617 Saccharomyces kudriavzevii SKUD_206617 I
SNOG_11500 Stagonospora nodorum SNOG_11500 I
SNOG_11501 Phaeosphaeria nodorum SNOG_11501 I
SOCG_04198 Schizosaccharomyces octosporus SOCG_04198 I
sfp1 Schizosaccharomyces pombe SPAC16.05c I
SPAPADRAFT_62197 Spathaspora passalidarum SPAPADRAFT_62197 I
SPOG_00344 Schizosaccharomyces cryophilus SPOG_00344 I
SU7_2383 Saccharomyces arboricola SU7_2383 I
TBLA_0I03040 Tetrapisispora blattae TBLA_0I03040 I
TEQG_05013 Trichophyton equinum TEQG_05013 I
TESG_04731 Trichophyton tonsurans TESG_04731 I
TPHA_0B00710 Tetrapisispora phaffii TPHA_0B00710 I
TPHA_0B02140 Tetrapisispora phaffii TPHA_0B02140 I
TRIATDRAFT_140885 Trichoderma atroviride TRIATDRAFT_140885 I
TRIREDRAFT_122680 Trichoderma reesei TRIREDRAFT_122680 I
TRIVIDRAFT_208206 Trichoderma virens TRIVIDRAFT_208206 I
TRV_02130 Trichophyton verrucosum TRV_02130 I
TSTA_094550 Talaromyces stipitatus TSTA_094550 I
U727_00432192271 Penicillium solitum U727_00432192271 I
UCRNP2_3551 Neofusicoccum parvum UCRNP2_3551 I
UCRPA7_5934 Togninia minima UCRPA7_5934 I
UREG_07103 Uncinocarpus reesii UREG_07103 I
UV8b_2245 Ustilaginoidea virens UV8b_2245 I
VDAG_06092 Verticillium dahliae VDAG_06092 I
VDBG_07384 Verticillium albo atrum VDBG_07384 I
VDBG_07384 Verticillium alfalfae VDBG_07384 I
VHEMI04961 Torrubiella hemipterigena VHEMI04961 I
W97_08713 Coniosporium apollinis W97_08713 I
X797_004862 Metarhizium robertsii X797_004862 I
XP_002493573.1 Pichia pastoris XP_002493573.1 I
YALI0_F11487g Yarrowia lipolytica YALI0_F11487g I
SFP1 Saccharomyces cerevisiae YLR403W D
Z517_04487 Fonsecaea pedrosoi Z517_04487 N
Z519_09367 Cladophialophora bantiana Z519_09367 N
ZBAI_02717 Zygosaccharomyces bailii ZBAI_02717 I
ZBAI_08964 Zygosaccharomyces bailii ZBAI_08964 I
ZYRO0B12738g Zygosaccharomyces rouxii ZYRO0B12738g I