CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R007595
(
Geospiza fortis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gfo_R007595
T047332_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.914
1.000
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.914
1.000
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.914
1.000
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.914
1.000
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.914
1.000
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.914
1.000
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.914
1.000
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886
0.942
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886
0.942
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886
0.942
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.886
0.923
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.886
0.923
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.886
0.923
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.886
0.923
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.886
0.923
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.886
0.923
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.886
0.923
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.886
0.923
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.886
0.923
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.886
0.923
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.886
0.923
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.886
0.923
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.886
0.923
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.886
0.923
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.886
0.846
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.886
0.846
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.886
0.846
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.884
0.885
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.884
0.885
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.884
0.885
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.884
0.885
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.884
0.885
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.884
0.885
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.884
0.885
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.884
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R007595
bHLH
538
591
RRVANNARERLRVRDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILNLE
Links
Other
bHLH
family TFs
Other
Geospiza fortis
TFs
208 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
15331_YLR403W
Saccharomyces paradoxus
15331_YLR403W
I
15714_YLR403W
Saccharomyces mikatae
15714_YLR403W
I
17461_YLR403W
Saccharomyces bayanus
17461_YLR403W
I
A1O1_07090
Capronia coronata
A1O1_07090
I
A1O3_04264
Capronia epimyces
A1O3_04264
I
A1O5_08144
Cladophialophora psammophila
A1O5_08144
N
AACERI_AaceriAER071W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAER071W
I
AB10302.1
Alternaria brassicicola
AB10302.1
I
ACRE_057400
Acremonium chrysogenum
ACRE_057400
I
AGOS_AER071W
Ashbya gossypii
AGOS_AER071W
I
AOL_s00004g580
Arthrobotrys oligospora
AOL_s00004g580
I
AUEXF2481DRAFT_311834
Aureobasidium subglaciale
AUEXF2481DRAFT_311834
I
AWRI1499_3112
Brettanomyces bruxellensis
AWRI1499_3112
I
BAUCODRAFT_120448
Baudoinia compniacensis
BAUCODRAFT_120448
I
BBA_01441
Beauveria bassiana
BBA_01441
I
BDDG_09794
Blastomyces dermatitidis
BDDG_09794
I
BN7_5712
Wickerhamomyces ciferrii
BN7_5712
I
ACLA_020620
Aspergillus clavatus
CADACLAG00002717
I
CADAFLAG00002691
Aspergillus flavus
CADAFLAG00002691
I
AFUA_1G14750
Aspergillus fumigatus
CADAFUAG00006891
I
CADANGAG00001277
Aspergillus niger
CADANGAG00001277
I
ANIA_00817
Aspergillus nidulans
CADANIAG00001843
I
CADAORAG00001127
Aspergillus oryzae
CADAORAG00001127
I
ATEG_00691
Aspergillus terreus
CADATEAG00005769
I
NFIA_010650
Neosartorya fischeri
CADNFIAG00001974
I
CAGL0D00682g
Candida glabrata
CAGL0D00682g
I
CAGL0M09955g
Candida glabrata
CAGL0M09955g
I
CANTEDRAFT_136954
Candida tenuis
CANTEDRAFT_136954
I
CaO19.13374
Candida albicans
CaO19.13374
I
CaO19.5953
Candida albicans
CaO19.5953
I
CCM_05399
Cordyceps militaris
CCM_05399
I
CD36_84830
Candida dubliniensis
CD36_84830
I
CGGC5_10732
Colletotrichum gloeosporioides
CGGC5_10732
I
CH063_11027
Colletotrichum higginsianum
CH063_11027
I
CHGG_01658
Chaetomium globosum
CHGG_01658
I
CIMG_03255
Coccidioides immitis
CIMG_03255
I
CLUG_05237
Candida lusitaniae
CLUG_05237
I
CLUG_05237
Clavispora lusitaniae
CLUG_05237
I
CMQ_3345
Grosmannia clavigera
CMQ_3345
N
Cob_13393
Colletotrichum orbiculare
Cob_13393
I
COCC4DRAFT_141470
Bipolaris maydis
COCC4DRAFT_141470
I
COCCADRAFT_35826
Bipolaris zeicola
COCCADRAFT_35826
I
COCMIDRAFT_8853
Bipolaris oryzae
COCMIDRAFT_8853
I
COCSADRAFT_185038
Bipolaris sorokiniana
COCSADRAFT_185038
I
COCVIDRAFT_42340
Bipolaris victoriae
COCVIDRAFT_42340
I
CORT_0C01760
Candida orthopsilosis
CORT_0C01760
I
CPC735_009250
Coccidioides posadasii
CPC735_009250
I
CPUR_03627
Claviceps purpurea
CPUR_03627
I
CSUB01_03330
Colletotrichum sublineola
CSUB01_03330
I
CTRG_02503
Candida tropicalis
CTRG_02503
I
DEHA2D11748g
Debaryomyces hansenii
DEHA2D11748g
I
DOTSEDRAFT_51823
Dothistroma septosporum
DOTSEDRAFT_51823
I
Ecym_3253
Eremothecium cymbalariae
Ecym_3253
I
estExt_fgenesh1_pg.C_170193
Cochliobolus heterostrophus C5
estExt_fgenesh1_pg.C_170193
I
estExt_fgenesh1_pg.C_90338
Mycosphaerella fijiensis
estExt_fgenesh1_pg.C_90338
I
estExt_fgenesh1_pm.C_40561
Cryphonectria parasitica
estExt_fgenesh1_pm.C_40561
I
estExt_fgenesh1_pm.C_chr_10304
Mycosphaerella graminicola
estExt_fgenesh1_pm.C_chr_10304
I
estExt_gwp_genewisePlus_worm.C_chr_1.20975
Pichia stipitis
estExt_gwp_genewisePlus_worm.C_chr_1.20975
I
EURHEDRAFT_512336
Aspergillus ruber
EURHEDRAFT_512336
I
F503_05202
Ophiostoma piceae uamh
F503_05202
N
FFUJ_00586
Fusarium fujikuroi
FFUJ_00586
I
fgenesh1_pg.sca_1_chr1_3_0000912
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000912
I
fgenesh1_pm.00042_#_268
Aspergillus carbonarius
fgenesh1_pm.00042_#_268
I
FGRRES_15767
Fusarium graminearum
FGRRES_15767
I
FOXG_00980
Fusarium oxysporum
FOXG_00980
I
FPSE_00633
Fusarium pseudograminearum
FPSE_00633
I
FVEG_00534
Fusarium verticillioides
FVEG_00534
I
G210_2438
Candida maltosa
G210_2438
I
GGTG_10100
Gaeumannomyces graminis
GGTG_10100
I
GLRG_00700
Colletotrichum graminicola
GLRG_00700
I
GNLVRS01_PISO0K03222g
Millerozyma farinosa
GNLVRS01_PISO0K03222g
I
GNLVRS01_PISO0L03223g
Millerozyma farinosa
GNLVRS01_PISO0L03223g
I
GSTUM_00008521001
Tuber melanosporum
GSTUM_00008521001
I
H072_2321
Dactylellina haptotyla
H072_2321
I
H101_05070
Trichophyton interdigitale
H101_05070
I
HCBG_01463
Histoplasma capsulatum
HCBG_01463
I
HMPREF1120_04491
Exophiala dermatitidis
HMPREF1120_04491
I
HMPREF1624_03059
Sporothrix schenckii
HMPREF1624_03059
N
HPODL_00600
Ogataea parapolymorpha
HPODL_00600
I
JL09_g4045
Pichia kudriavzevii
JL09_g4045
I
KAFR_0A05850
Kazachstania africana
KAFR_0A05850
I
KLTH0D14718g
Lachancea thermotolerans
KLTH0D14718g
I
KLTH0D14718g
Kluyveromyces thermotolerans
KLTH0D14718g
I
KNAG_0B06200
Kazachstania naganishii
KNAG_0B06200
I
Kpol_1002p4
Vanderwaltozyma polyspora
Kpol_1002p4
I
Kpol_1055p71
Vanderwaltozyma polyspora
Kpol_1055p71
I
KUCA_T00000649001
Kuraishia capsulata
KUCA_T00000649001
I
Kwal_4156
Kluyveromyces waltii
Kwal_4156
I
LALA0_S03e06964g
Lachancea lanzarotensis
LALA0_S03e06964g
I
LELG_02885
Lodderomyces elongisporus
LELG_02885
I
LEMA_P092020.1
Leptosphaeria maculans
LEMA_P092020.1
I
M437DRAFT_61697
Aureobasidium melanogenum
M437DRAFT_61697
I
M438DRAFT_147774
Aureobasidium pullulans
M438DRAFT_147774
I
M7I_6817
Glarea lozoyensis
M7I_6817
I
MAM_05286
Metarhizium album
MAM_05286
I
MAPG_03070
Magnaporthe poae
MAPG_03070
I
MCYG_06487
Microsporum canis
MCYG_06487
I
MGG_01209
Magnaporthe oryzae
MGG_01209
I
MGYG_06954
Microsporum gypseum
MGYG_06954
I
MPH_04552
Macrophomina phaseolina
MPH_04552
I
MYCFIDRAFT_215154
Pseudocercospora fijiensis
MYCFIDRAFT_215154
I
Mycgr3G98356
Zymoseptoria tritici
Mycgr3G98356
I
NCAS_0A02570
Naumovozyma castellii
NCAS_0A02570
I
NCAS_0J01590
Naumovozyma castellii
NCAS_0J01590
I
NDAI_0D04320
Naumovozyma dairenensis
NDAI_0D04320
I
NDAI_0J02360
Naumovozyma dairenensis
NDAI_0J02360
I
NechaG75301
Fusarium solani
NechaG75301
I
OCS_02976
Ophiocordyceps sinensis
OCS_02976
I
OIDMADRAFT_149888
Oidiodendron maius
OIDMADRAFT_149888
I
PAAG_05441
Paracoccidioides sp lutzii
PAAG_05441
I
PABG_05941
Paracoccidioides brasiliensis
PABG_05941
I
PAS_chr4_0169
Komagataella pastoris
PAS_chr4_0169
I
Pc16g13790
Penicillium chrysogenum
Pc16g13790
I
PCH_Pc16g13790
Penicillium rubens
PCH_Pc16g13790
I
PDE_00574
Penicillium oxalicum
PDE_00574
I
PDIP_66170
Penicillium digitatum
PDIP_66170
I
PEX1_093760
Penicillium expansum
PEX1_093760
I
PFICI_06906
Pestalotiopsis fici
PFICI_06906
I
PGUG_02203
Candida guilliermondii
PGUG_02203
I
PGUG_02203
Meyerozyma guilliermondii
PGUG_02203
I
PICST_81274
Scheffersomyces stipitis
PICST_81274
I
PITC_047260
Penicillium italicum
PITC_047260
I
PMAA_073990
Talaromyces marneffei
PMAA_073990
I
PMAA_073990
Penicillium marneffei
PMAA_073990
I
PNEG_01028
Pneumocystis murina
PNEG_01028
I
PODANS_1_4460
Podospora anserina
PODANS_1_4460
I
PredSwiss_CON3163.1
Pneumocystis carinii
PredSwiss_CON3163.1
I
PredSwiss_EST880.1
Pneumocystis carinii
PredSwiss_EST880.1
I
PTRG_04689
Pyrenophora triticirepentis
PTRG_04689
I
PTT_09059
Pyrenophora teres
PTT_09059
I
PV05_07500
Exophiala xenobiotica
PV05_07500
N
PV06_07675
Exophiala oligosperma
PV06_07675
I
PV07_01574
Cladophialophora immunda
PV07_01574
N
PV09_00537
Verruconis gallopava
PV09_00537
I
PV10_03433
Exophiala mesophila
PV10_03433
N
PV11_04834
Exophiala sideris
PV11_04834
N
PVAR5_1442
Byssochlamys spectabilis
PVAR5_1442
I
S40285_08847
Stachybotrys chlorohalonata
S40285_08847
I
S40288_02803
Stachybotrys chartarum
S40288_02803
I
SAPIO_CDS1423
Scedosporium apiospermum
SAPIO_CDS1423
I
Scas_Contig719.24
Saccharomyces castellii
Scas_Contig719.24
I
SETTUDRAFT_87041
Setosphaeria turcica
SETTUDRAFT_87041
I
SJAG_03241
Schizosaccharomyces japonicus
SJAG_03241
I
SKUD_206617
Saccharomyces kudriavzevii
SKUD_206617
I
SNOG_11500
Stagonospora nodorum
SNOG_11500
I
SNOG_11501
Phaeosphaeria nodorum
SNOG_11501
I
SOCG_04198
Schizosaccharomyces octosporus
SOCG_04198
I
sfp1
Schizosaccharomyces pombe
SPAC16.05c
I
SPAPADRAFT_62197
Spathaspora passalidarum
SPAPADRAFT_62197
I
SPOG_00344
Schizosaccharomyces cryophilus
SPOG_00344
I
SU7_2383
Saccharomyces arboricola
SU7_2383
I
TBLA_0I03040
Tetrapisispora blattae
TBLA_0I03040
I
TEQG_05013
Trichophyton equinum
TEQG_05013
I
TESG_04731
Trichophyton tonsurans
TESG_04731
I
TPHA_0B00710
Tetrapisispora phaffii
TPHA_0B00710
I
TPHA_0B02140
Tetrapisispora phaffii
TPHA_0B02140
I
TRIATDRAFT_140885
Trichoderma atroviride
TRIATDRAFT_140885
I
TRIREDRAFT_122680
Trichoderma reesei
TRIREDRAFT_122680
I
TRIVIDRAFT_208206
Trichoderma virens
TRIVIDRAFT_208206
I
TRV_02130
Trichophyton verrucosum
TRV_02130
I
TSTA_094550
Talaromyces stipitatus
TSTA_094550
I
U727_00432192271
Penicillium solitum
U727_00432192271
I
UCRNP2_3551
Neofusicoccum parvum
UCRNP2_3551
I
UCRPA7_5934
Togninia minima
UCRPA7_5934
I
UREG_07103
Uncinocarpus reesii
UREG_07103
I
UV8b_2245
Ustilaginoidea virens
UV8b_2245
I
VDAG_06092
Verticillium dahliae
VDAG_06092
I
VDBG_07384
Verticillium albo atrum
VDBG_07384
I
VDBG_07384
Verticillium alfalfae
VDBG_07384
I
VHEMI04961
Torrubiella hemipterigena
VHEMI04961
I
W97_08713
Coniosporium apollinis
W97_08713
I
X797_004862
Metarhizium robertsii
X797_004862
I
XP_002493573.1
Pichia pastoris
XP_002493573.1
I
YALI0_F11487g
Yarrowia lipolytica
YALI0_F11487g
I
SFP1
Saccharomyces cerevisiae
YLR403W
D
Z517_04487
Fonsecaea pedrosoi
Z517_04487
N
Z519_09367
Cladophialophora bantiana
Z519_09367
N
ZBAI_02717
Zygosaccharomyces bailii
ZBAI_02717
I
ZBAI_08964
Zygosaccharomyces bailii
ZBAI_08964
I
ZYRO0B12738g
Zygosaccharomyces rouxii
ZYRO0B12738g
I