CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gfo_R011871 *(Geospiza fortis)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	Gfo_R011871	T047347_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MAX M02785_2.00	Homo sapiens	CACGTGNHNNNCACGTG	CACGTGNNNDNCACGTG	SELEX Jolma et al.(2013) MAX_1	0.889	1.000
MAX M02786_2.00	Homo sapiens	VVCACGTGNN	NNCACGTGBB	SELEX Jolma et al.(2013) MAX_2	0.889	1.000
MAX M04112_2.00	Homo sapiens	NCACGTGNNNNNCACGTGN	NCACGTGNNNNNCACGTGN	SELEX Yin et al.(2017) MAX_eDBD_HT-SELEX	0.889	1.000
MAX M04114_2.00	Homo sapiens	NVCACGTGNB	VNCACGTGBN	SELEX Yin et al.(2017) MAX_FL_HT-SELEX	0.889	1.000
MAX M05832_2.00	Homo sapiens	CACGTG	CACGTG	SMiLE-seq Isakova et al.(2017) MAX	0.889	1.000
MAX M07791_2.00	Homo sapiens	SNBCACGTGNYHN	NDRNCACGTGVNS	ChIP-seq Gerstein et al.(2012) GM12878_MAX_Stanford	0.889	1.000
MAX M07792_2.00	Homo sapiens	NVRVCACGTGS	SCACGTGBYBN	ChIP-seq Gerstein et al.(2012) H1-hESC_MAX_UCD	0.889	1.000
MAX M07793_2.00	Homo sapiens	DSCACGTGKBN	NVMCACGTGSH	ChIP-seq Gerstein et al.(2012) HeLa-S3_MAX_Stanford	0.889	1.000
MAX M07794_2.00	Homo sapiens	NRRBCACGTGVNS	SNBCACGTGVYYN	ChIP-seq Gerstein et al.(2012) HUVEC_MAX_Stanford	0.889	1.000
MAX M07795_2.00	Homo sapiens	VVVCACGTGS	SCACGTGBBB	ChIP-seq Gerstein et al.(2012) K562_MAX_HudsonAlpha	0.889	1.000
MAX M07796_2.00	Homo sapiens	BCACGTGVYY	RRBCACGTGV	ChIP-seq Gerstein et al.(2012) K562_MAX_Stanford	0.889	1.000
MAX M07797_2.00	Homo sapiens	VCACGTGNYYN	NRRNCACGTGB	ChIP-seq Gerstein et al.(2012) NB4_MAX_Stanford	0.889	1.000
MAX M08723_2.00	Homo sapiens	VNSCACGTGD	HCACGTGSNB	Misc Kulakovskiy et al.(2013) MAX_HUMAN.H11MO.0.A	0.889	1.000
MAX M09835_2.00	Homo sapiens	NDRNCACGTGNYHN	NDRNCACGTGNYHN	Transfac Matys et al.(2006) V$MAX_01	0.889	1.000
MAX M09836_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MAX_11	0.889	1.000
MAX M09837_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MAX_Q6	0.889	1.000
MAX M04113_2.00	Homo sapiens	BCACRTGBHNNBCACATGK	MCATGTGVNNDVCAYGTGV	SELEX Yin et al.(2017) MAX_eDBD_Methyl-HT-SELEX	0.889	1.000
MAX M04115_2.00	Homo sapiens	NNCACRTGBN	NVCAYGTGNN	SELEX Yin et al.(2017) MAX_FL_Methyl-HT-SELEX	0.889	1.000
MAX M00938_2.00	Homo sapiens	CCACGTGH	DCACGTGG	PBM Guo et al.(2014) Max_L	0.716	1.000
Max M00121_2.00	Mus musculus	NCRCRTGNN	NNCAYGYGN	PBM Badis et al.(2009) Max_3863	0.716	1.000
Max M00122_2.00	Mus musculus	NNCRCRTGN	NCAYGYGNN	PBM Badis et al.(2009) Max_3864	0.716	1.000
Max M01753_2.00	Mus musculus	NCAYGYKNN	NNMRCRTGN	PBM Weirauch et al.(2014) pTH4381	0.716	1.000
Max M08778_2.00	Mus musculus	VVVCACGYGSN	NSCRCGTGBBB	Misc Kulakovskiy et al.(2013) MAX_MOUSE.H11MO.0.A	0.716	1.000
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gfo_R011871	bHLH	31	64	KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK

Links
Other bHLH family TFs
Other *Geospiza fortis* TFs

5 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MAX	Pteropus vampyrus	ENSPVAG00000011396	I	0.914
MAX	Vicugna pacos	ENSVPAG00000006380	I	0.914
MAX	Callithrix jacchus	ENSCJAG00000019702	I	0.889
MAX	Homo sapiens	ENSG00000125952	D	0.889
MAX	Macaca mulatta	ENSMMUG00000004341	I	0.889

Gfo_R011871 (Geospiza fortis) bHLH

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

5 Related TFs

Gfo_R011871 **(Geospiza fortis)
bHLH**