CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30068.m002581
(
Ricinus communis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
30068.m002581
T047891_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.847
0.854
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN
NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.847
0.854
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK
MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.847
0.854
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.847
0.833
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN
NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.847
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30068.m002581
bHLH
304
351
LNHVEAERQRRERLNNRFYALRSVVPNVSKMDKASLLADAVTYIQELK
Links
Other
bHLH
family TFs
Other
Ricinus communis
TFs
151 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_1892.1
Carica papaya
evm.TU.supercontig_1892.1
I
0.914
POPTR_0003s14710
Populus trichocarpa
POPTR_0003s14710
I
0.894
cassava39612.m1
Manihot esculenta
cassava39612.m1
I
0.894
cassava40529.m1
Manihot esculenta
cassava40529.m1
I
0.894
cassava41468.m1
Manihot esculenta
cassava41468.m1
I
0.894
cassava45188.m1
Manihot esculenta
cassava45188.m1
I
0.894
cassava45233.m1
Manihot esculenta
cassava45233.m1
I
0.894
cassava45234.m1
Manihot esculenta
cassava45234.m1
I
0.894
SapurV1A.0059s0390
Salix purpurea
SapurV1A.0059s0390
I
0.894
POPTR_0001s11400
Populus trichocarpa
POPTR_0001s11400
I
0.883
SapurV1A.0094s0280
Salix purpurea
SapurV1A.0094s0280
I
0.883
TCM_015640
Theobroma cacao
TCM_015640
N
0.870
Ciclev10019730m.g
Citrus clementina
Ciclev10019730m.g
N
0.870
Gorai.008G259000
Gossypium raimondii
Gorai.008G259000
N
0.870
orange1.1g010053m.g
Citrus sinensis
orange1.1g010053m.g
N
0.870
Cla006801
Citrullus lanatus
Cla006801
I
0.866
Cla006802
Citrullus lanatus
Cla006802
I
0.866
Cucsa.120830
Cucumis sativus
Cucsa.120830
I
0.866
PK23618.1
Cannabis sativa
PK23618.1
I
0.866
GLYMA02G09670
Glycine max
GLYMA02G09670
I
0.859
MTR_8g024770
Medicago truncatula
MTR_8g024770
I
0.859
MTR_8g024790
Medicago truncatula
MTR_8g024790
I
0.859
PGSC0003DMG400012237
Solanum tuberosum
PGSC0003DMG400012237
I
0.859
PRUPE_ppa005343mg
Prunus persica
PRUPE_ppa005343mg
I
0.859
Sb09g008120
Sorghum bicolor
Sb09g008120
I
0.859
Si021549m.g
Setaria italica
Si021549m.g
I
0.859
Solyc08g083170.1
Solanum lycopersicum
Solyc08g083170.1
I
0.859
Pm029399
Prunus mume
Pm029399
I
0.859
gene01894-v1.0-hybrid
Fragaria vesca
gene01894-v1.0-hybrid
I
0.859
Pavir.Ca00449
Panicum virgatum
Pavir.Ca00449
I
0.859
Pavir.Cb01851
Panicum virgatum
Pavir.Cb01851
I
0.859
BRADI3G41940
Brachypodium distachyon
BRADI3G41940
N
0.857
Cla008954
Citrullus lanatus
Cla008954
I
0.856
Cucsa.321840
Cucumis sativus
Cucsa.321840
I
0.856
GSMUA_Achr5G29390_001
Musa acuminata
GSMUA_Achr5G29390_001
N
0.854
Gorai.012G124100
Gossypium raimondii
Gorai.012G124100
N
0.851
BHLH30
Arabidopsis thaliana
AT1G68810
I
0.850
Bo6g108270
Brassica oleracea
Bo6g108270
I
0.850
Bra004015
Brassica rapa
Bra004015
I
0.850
Bra004338
Brassica rapa
Bra004338
I
0.850
fgenesh2_kg.2__1138__AT1G68810.1
Arabidopsis lyrata
fgenesh2_kg.2__1138__AT1G68810.1
I
0.850
GLYMA01G22530
Glycine max
GLYMA01G22530
I
0.850
GLYMA02G11190
Glycine max
GLYMA02G11190
I
0.850
PGSC0003DMG400000824
Solanum tuberosum
PGSC0003DMG400000824
I
0.850
Solyc04g006990.2
Solanum lycopersicum
Solyc04g006990.2
I
0.850
Solyc05g009880.2
Solanum lycopersicum
Solyc05g009880.2
I
0.850
Ca_24775
Cicer arietinum
Ca_24775
I
0.850
Cla000223
Citrullus lanatus
Cla000223
I
0.850
Bostr.26959s0001
Boechera stricta
Bostr.26959s0001
I
0.850
Cagra.1157s0003
Capsella grandiflora
Cagra.1157s0003
I
0.850
Carubv10020515m.g
Capsella rubella
Carubv10020515m.g
I
0.850
Thhalv10018758m.g
Eutrema salsugineum
Thhalv10018758m.g
I
0.850
chr2.CM0749.390.nc
Lotus japonicus
chr2.CM0749.390.nc
I
0.850
MYC2
Arabidopsis thaliana
AT1G32640
D
0.847
MYC4
Arabidopsis thaliana
AT4G17880
D
0.847
MYC3
Arabidopsis thaliana
AT5G46760
D
0.847
Bo01130s010
Brassica oleracea
Bo01130s010
I
0.847
Bo1g017990
Brassica oleracea
Bo1g017990
I
0.847
Bo5g086990
Brassica oleracea
Bo5g086990
I
0.847
Bo7g075710
Brassica oleracea
Bo7g075710
I
0.847
Bo8g028850
Brassica oleracea
Bo8g028850
I
0.847
Bo9g065530
Brassica oleracea
Bo9g065530
I
0.847
Bo9g066680
Brassica oleracea
Bo9g066680
I
0.847
Bra010178
Brassica rapa
Bra010178
I
0.847
Bra013263
Brassica rapa
Bra013263
I
0.847
Bra017523
Brassica rapa
Bra017523
I
0.847
Bra017527
Brassica rapa
Bra017527
I
0.847
Bra024998
Brassica rapa
Bra024998
I
0.847
fgenesh2_kg.7__2520__AT4G17880.1
Arabidopsis lyrata
fgenesh2_kg.7__2520__AT4G17880.1
I
0.847
GLYMA01G02251
Glycine max
GLYMA01G02251
I
0.847
GLYMA01G12740
Glycine max
GLYMA01G12740
I
0.847
GLYMA08G36720
Glycine max
GLYMA08G36720
I
0.847
GLYMA09G33730
Glycine max
GLYMA09G33730
I
0.847
MTR_5g030430
Medicago truncatula
MTR_5g030430
I
0.847
PGSC0003DMG400001161
Solanum tuberosum
PGSC0003DMG400001161
I
0.847
PGSC0003DMG400017535
Solanum tuberosum
PGSC0003DMG400017535
I
0.847
POPTR_0003s09090
Populus trichocarpa
POPTR_0003s09090
I
0.847
PRUPE_ppa002404mg
Prunus persica
PRUPE_ppa002404mg
I
0.847
ATMYC2
Arabidopsis lyrata
scaffold_103634.1
I
0.847
scaffold_800152.1
Arabidopsis lyrata
scaffold_800152.1
I
0.847
Solyc08g076930.1
Solanum lycopersicum
Solyc08g076930.1
I
0.847
Ca_11514
Cicer arietinum
Ca_11514
I
0.847
Ca_12352
Cicer arietinum
Ca_12352
I
0.847
Pm023237
Prunus mume
Pm023237
I
0.847
mgf002775m
Mimulus guttatus
mgf002775m
I
0.847
Bostr.28243s0060
Boechera stricta
Bostr.28243s0060
I
0.847
Bostr.30275s0255
Boechera stricta
Bostr.30275s0255
I
0.847
Bostr.3359s0090
Boechera stricta
Bostr.3359s0090
I
0.847
Cagra.0751s0023
Capsella grandiflora
Cagra.0751s0023
I
0.847
Cagra.3356s0080
Capsella grandiflora
Cagra.3356s0080
I
0.847
Cagra.7865s0024
Capsella grandiflora
Cagra.7865s0024
I
0.847
Carubv10004392m.g
Capsella rubella
Carubv10004392m.g
I
0.847
Carubv10008586m.g
Capsella rubella
Carubv10008586m.g
I
0.847
Carubv10028441m.g
Capsella rubella
Carubv10028441m.g
I
0.847
gene10501-v1.0-hybrid
Fragaria vesca
gene10501-v1.0-hybrid
I
0.847
Gorai.003G182100
Gossypium raimondii
Gorai.003G182100
I
0.847
MDP0000029168
Malus domestica
MDP0000029168
I
0.847
MDP0000136498
Malus domestica
MDP0000136498
I
0.847
SapurV1A.0151s0080
Salix purpurea
SapurV1A.0151s0080
I
0.847
Thhalv10000808m.g
Eutrema salsugineum
Thhalv10000808m.g
I
0.847
Thhalv10007075m.g
Eutrema salsugineum
Thhalv10007075m.g
I
0.847
Thhalv10024688m.g
Eutrema salsugineum
Thhalv10024688m.g
I
0.847
PK18474.1
Cannabis sativa
PK18474.1
D
0.847
chr2.CM0177.830.nc
Lotus japonicus
chr2.CM0177.830.nc
I
0.847
Bra024993
Brassica rapa
Bra024993
I
0.846
GLYMA07G05740
Glycine max
GLYMA07G05740
I
0.846
GLYMA16G02320
Glycine max
GLYMA16G02320
I
0.846
GSMUA_Achr1G18910_001
Musa acuminata
GSMUA_Achr1G18910_001
I
0.846
PGSC0003DMG400018332
Solanum tuberosum
PGSC0003DMG400018332
I
0.846
POPTR_0002s17750
Populus trichocarpa
POPTR_0002s17750
I
0.846
PRUPE_ppa004680mg
Prunus persica
PRUPE_ppa004680mg
I
0.846
Solyc01g096370.2
Solanum lycopersicum
Solyc01g096370.2
I
0.846
TCM_005064
Theobroma cacao
TCM_005064
I
0.846
VIT_02s0025g02610
Vitis vinifera
VIT_02s0025g02610
I
0.846
VIT_15s0048g02820
Vitis vinifera
VIT_15s0048g02820
I
0.846
27964.m000352
Ricinus communis
27964.m000352
I
0.846
27964.m000356
Ricinus communis
27964.m000356
I
0.846
cassava29800.valid.m1
Manihot esculenta
cassava29800.valid.m1
I
0.846
cassava32651.m1
Manihot esculenta
cassava32651.m1
I
0.846
mgf001993m
Mimulus guttatus
mgf001993m
I
0.846
Aquca_037_00261
Aquilegia coerulea
Aquca_037_00261
I
0.846
Bostr.7365s0026
Boechera stricta
Bostr.7365s0026
I
0.846
Cagra.4923s0009
Capsella grandiflora
Cagra.4923s0009
I
0.846
Carubv10001082m.g
Capsella rubella
Carubv10001082m.g
I
0.846
Ciclev10019749m.g
Citrus clementina
Ciclev10019749m.g
I
0.846
Eucgr.E00019
Eucalyptus grandis
Eucgr.E00019
I
0.846
evm.TU.supercontig_141.19
Carica papaya
evm.TU.supercontig_141.19
I
0.846
gene18651-v1.0-hybrid
Fragaria vesca
gene18651-v1.0-hybrid
I
0.846
Gorai.001G151700
Gossypium raimondii
Gorai.001G151700
I
0.846
Gorai.004G149500
Gossypium raimondii
Gorai.004G149500
I
0.846
Gorai.007G111800
Gossypium raimondii
Gorai.007G111800
I
0.846
Gorai.008G128800
Gossypium raimondii
Gorai.008G128800
I
0.846
MDP0000160600
Malus domestica
MDP0000160600
I
0.846
MDP0000224302
Malus domestica
MDP0000224302
I
0.846
MDP0000242554
Malus domestica
MDP0000242554
I
0.846
MDP0000603546
Malus domestica
MDP0000603546
I
0.846
MDP0000729514
Malus domestica
MDP0000729514
I
0.846
MDP0000859492
Malus domestica
MDP0000859492
I
0.846
MDP0000900024
Malus domestica
MDP0000900024
I
0.846
orange1.1g046178m.g
Citrus sinensis
orange1.1g046178m.g
I
0.846
SapurV1A.0003s0670
Salix purpurea
SapurV1A.0003s0670
I
0.846
Ca_17603
Cicer arietinum
Ca_17603
I
0.845
Bra017520
Brassica rapa
Bra017520
I
0.844
MTR_8g067280
Medicago truncatula
MTR_8g067280
I
0.844
Gorai.004G184800
Gossypium raimondii
Gorai.004G184800
I
0.844
Gorai.007G059100
Gossypium raimondii
Gorai.007G059100
N
0.842
AMTR_s00002p00019320
Amborella trichopoda
AMTR_s00002p00019320
I
0.841
MTR_4g097950
Medicago truncatula
MTR_4g097950
I
0.841
Ca_09378
Cicer arietinum
Ca_09378
I
0.841
PGSC0003DMG400030623
Solanum tuberosum
PGSC0003DMG400030623
N
0.840
Solyc02g091820.1
Solanum lycopersicum
Solyc02g091820.1
N
0.840