Cucsa.113490 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.113490 T048160_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.884 0.941
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.884 0.941
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.884 0.941
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.884 0.941
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.882 0.902
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.864 0.804
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.864 0.804
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.864 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.113490.1 bHLH 269 319
Cucsa.113490.2 bHLH 268 318
Cucsa.113490.3 bHLH 231 281
Cucsa.113490.4 bHLH 144 194

Links

Other bHLH family TFs
Other Cucumis sativus TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cla018818 Citrullus lanatus Cla018818 I 0.902
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.901
BIM1 Arabidopsis thaliana AT5G08130 D 0.884
Bo2g161110 Brassica oleracea Bo2g161110 I 0.884
Bo3g004690 Brassica oleracea Bo3g004690 I 0.884
Bo5g020460 Brassica oleracea Bo5g020460 I 0.884
Bo9g174770 Brassica oleracea Bo9g174770 I 0.884
Bra009322 Brassica rapa Bra009322 I 0.884
Bra029354 Brassica rapa Bra029354 I 0.884
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.884
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.884
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.884
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.884
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.884
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.884
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.884
TCM_014392 Theobroma cacao TCM_014392 I 0.884
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.884
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.884
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.884
mgf001137m Mimulus guttatus mgf001137m I 0.884
mgf005849m Mimulus guttatus mgf005849m I 0.884
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.884
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.884
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.884
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.884
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.884
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.884
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.884
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.884
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.884
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.884
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.884
PK10562.1 Cannabis sativa PK10562.1 I 0.884
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.882
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.882
Bra005969 Brassica rapa Bra005969 I 0.882
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.882
OB08G25940 Oryza brachyantha OB08G25940 I 0.882
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.882
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.882
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.882
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.882
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.882
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.882
OS08G0490000 Oryza sativa OS08G0490000 I 0.882
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.882
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.882
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.882
Si013622m.g Setaria italica Si013622m.g I 0.882
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.882
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.882
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.882
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.882
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.882
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.873
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.873
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.871
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.871
BIM2 Arabidopsis thaliana AT1G69010 D 0.864
Bo2g062560 Brassica oleracea Bo2g062560 I 0.864
Bo6g108530 Brassica oleracea Bo6g108530 I 0.864
Bra004355 Brassica rapa Bra004355 I 0.864
Bra038332 Brassica rapa Bra038332 I 0.864
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.864
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.864
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.864
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.864
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.864
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.864
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.864
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.864
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.864
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.864
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.864
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.864
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.864
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.864
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.864
TCM_011433 Theobroma cacao TCM_011433 I 0.864
TCM_019015 Theobroma cacao TCM_019015 I 0.864
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.864
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.864
Ca_22043 Cicer arietinum Ca_22043 I 0.864
Cla022382 Citrullus lanatus Cla022382 I 0.864
29790.m000843 Ricinus communis 29790.m000843 I 0.864
30138.m003899 Ricinus communis 30138.m003899 I 0.864
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.864
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.864
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.864
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.864
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.864
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.864
mgf011829m Mimulus guttatus mgf011829m I 0.864
mgf013208m Mimulus guttatus mgf013208m I 0.864
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.864
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.864
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.864
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.864
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.864
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.864
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.864
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.864
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.864
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.864
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.864
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.864
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.864
MDP0000261293 Malus domestica MDP0000261293 I 0.864
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.864
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.864
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.864
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.864
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.864
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.864
PK00238.1 Cannabis sativa PK00238.1 I 0.864
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.861
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.861
PK01364.1 Cannabis sativa PK01364.1 I 0.861
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.860
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.860
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.860
30138.m003913 Ricinus communis 30138.m003913 I 0.860
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.858
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.855
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.855
F775_23096 Aegilops tauschii F775_23096 I 0.855
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.855
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.855
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.855
OBART09G13850 Oryza barthii OBART09G13850 I 0.855
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.855
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.855
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.855
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.855
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.855
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.855
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.855
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.855
OS09G0475400 Oryza sativa OS09G0475400 I 0.855
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.855
Si029604m.g Setaria italica Si029604m.g I 0.855
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.855
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.855
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.855
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.855
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.852
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.851
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.848
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.848
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.848
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.846
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.846
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.846
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.846
OB02G38020 Oryza brachyantha OB02G38020 I 0.846
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.846
OS02G0726700 Oryza sativa OS02G0726700 I 0.846
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.846
Si016505m.g Setaria italica Si016505m.g I 0.846
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.846
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.846
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.846
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.846
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.840
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.840
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.840
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.840