estExt_fgenesh1_pg.C_1240017 (Physcomitrella patens)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_fgenesh1_pg.C_1240017 T048319_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRM
M09784_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ICE1_01 		0.887 0.708
AMS
M09782_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AMS_01 		0.868 0.708
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_1240017 bHLH 179 226

Links

Other bHLH family TFs
Other Physcomitrella patens TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29631.m001025 Ricinus communis 29631.m001025 N 0.854
30131.m006993 Ricinus communis 30131.m006993 I 0.852
30147.m014419 Ricinus communis 30147.m014419 I 0.887
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.861
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.887
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.881
AMTR_s00096p00160080 Amborella trichopoda AMTR_s00096p00160080 I 0.866
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.911
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.911
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.887
SCRM2 Arabidopsis thaliana AT1G12860 I 0.887
AMS Arabidopsis thaliana AT2G16910 D 0.868
SCRM Arabidopsis thaliana AT3G26744 D 0.887
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.887
BGIOSGA007229 Oryza indica BGIOSGA007229 I 0.861
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.887
Bo00285s440 Brassica oleracea Bo00285s440 I 0.887
Bo3g091780 Brassica oleracea Bo3g091780 I 0.868
Bo5g016510 Brassica oleracea Bo5g016510 I 0.887
Bo7g016210 Brassica oleracea Bo7g016210 I 0.868
Bo7g083870 Brassica oleracea Bo7g083870 I 0.887
Bo8g065080 Brassica oleracea Bo8g065080 I 0.887
Bo9g008020 Brassica oleracea Bo9g008020 I 0.887
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.887
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.887
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.868
Bra002004 Brassica rapa Bra002004 I 0.868
Bra013041 Brassica rapa Bra013041 I 0.868
Bra016749 Brassica rapa Bra016749 I 0.887
Bra019794 Brassica rapa Bra019794 I 0.887
Bra025226 Brassica rapa Bra025226 I 0.887
Bra032947 Brassica rapa Bra032947 I 0.887
Bra034246 Brassica rapa Bra034246 I 0.887
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.887
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I 0.854
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.881
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.857
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.857
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.868
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.887
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.857
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.868
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.887
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.887
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.844
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.844
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.887
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I 0.852
Ca_01394 Cicer arietinum Ca_01394 I 0.887
Ca_05416 Cicer arietinum Ca_05416 I 0.868
Ca_23693 Cicer arietinum Ca_23693 I 0.868
Ca_23694 Cicer arietinum Ca_23694 I 0.868
Ca_23892 Cicer arietinum Ca_23892 I 0.876
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.887
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.887
Ciclev10030105m.g Citrus clementina Ciclev10030105m.g I 0.842
Cla002682 Citrullus lanatus Cla002682 I 0.887
Cla003283 Citrullus lanatus Cla003283 I 0.887
Cla016068 Citrullus lanatus Cla016068 I 0.891
Cla023112 Citrullus lanatus Cla023112 I 0.857
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.891
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.857
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.887
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.887
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.891
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.887
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.887
estExt_gwp_gw1.C_1820005 Physcomitrella patens estExt_gwp_gw1.C_1820005 I 0.894
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.898
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.887
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.911
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.898
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.887
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.891
F775_14780 Aegilops tauschii F775_14780 I 0.887
F775_15875 Aegilops tauschii F775_15875 I 0.857
fgenesh1_pg.scaffold_1000274 Physcomitrella patens fgenesh1_pg.scaffold_1000274 I 0.894
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.868
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.887
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.887
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I 0.861
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.868
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.887
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.857
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.887
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.868
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.857
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.887
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.881
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.857
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.887
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.868
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.887
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.887
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.887
Gorai.008G036900 Gossypium raimondii Gorai.008G036900 I 0.854
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.861
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.887
GRMZM2G119823 Zea mays GRMZM2G119823 I 0.857
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.887
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.887
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.887
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.887
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I 0.861
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.876
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.911
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.911
GSMUA_Achr3G00640_001 Musa acuminata GSMUA_Achr3G00640_001 N 0.851
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.887
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I 0.861
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.863
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I 0.914
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.887
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.868
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.887
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.887
Lus10030609.g Linum usitatissimum Lus10030609.g N 0.854
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.857
Lus10043199.g Linum usitatissimum Lus10043199.g I 0.857
MDP0000219146 Malus domestica MDP0000219146 I 0.863
MDP0000243628 Malus domestica MDP0000243628 I 0.849
MDP0000247912 Malus domestica MDP0000247912 I 0.887
MDP0000304669 Malus domestica MDP0000304669 I 0.887
MDP0000405748 Malus domestica MDP0000405748 I 0.868
MDP0000662999 Malus domestica MDP0000662999 I 0.887
MDP0000790939 Malus domestica MDP0000790939 N 0.850
mgf012194m Mimulus guttatus mgf012194m I 0.887
mgf015974m Mimulus guttatus mgf015974m I 0.887
mgf016462m Mimulus guttatus mgf016462m I 0.887
mgf018455m Mimulus guttatus mgf018455m I 0.844
mgf019723m Mimulus guttatus mgf019723m I 0.861
mgf024029m Mimulus guttatus mgf024029m I 0.861
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.887
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.881
MLOC_56814 Hordeum vulgare MLOC_56814 I 0.846
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.887
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.868
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.887
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.876
OBART01G42600 Oryza barthii OBART01G42600 I 0.887
OBART02G01550 Oryza barthii OBART02G01550 I 0.861
OBART04G06800 Oryza barthii OBART04G06800 N 0.856
OBART11G15260 Oryza barthii OBART11G15260 I 0.887
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.887
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I 0.861
OGLUM04G06590 Oryza glumaepatula OGLUM04G06590 N 0.856
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.887
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.887
OMERI02G00890 Oryza meridionalis OMERI02G00890 I 0.861
OMERI03G04040 Oryza meridionalis OMERI03G04040 N 0.856
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.887
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.887
ONIVA02G01430 Oryza nivara ONIVA02G01430 I 0.861
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.887
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.887
OPUNC02G01010 Oryza punctata OPUNC02G01010 I 0.861
OPUNC04G05620 Oryza punctata OPUNC04G05620 N 0.856
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.887
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.887
orange1.1g045155m.g Citrus sinensis orange1.1g045155m.g I 0.842
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.887
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.887
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I 0.861
ORGLA04G0051300 Oryza glaberrima ORGLA04G0051300 N 0.856
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.887
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.887
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I 0.861
ORUFI04G07840 Oryza rufipogon ORUFI04G07840 N 0.856
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.887
OS01G0928000 Oryza sativa OS01G0928000 I 0.887
TDR Oryza sativa OS02G0120500 I 0.861
OS04G0300600 Oryza sativa OS04G0300600 N 0.856
OS11G0523700 Oryza sativa OS11G0523700 I 0.887
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.881
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.887
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.887
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.876
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.887
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.911
PGSC0003DMG400008195 Solanum tuberosum PGSC0003DMG400008195 I 0.854
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.911
PGSC0003DMG400017440 Solanum tuberosum PGSC0003DMG400017440 I 0.867
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.857
PK03241.1 Cannabis sativa PK03241.1 I 0.878
PK06841.1 Cannabis sativa PK06841.1 I 0.887
PK06940.1 Cannabis sativa PK06940.1 I 0.887
Pm008898 Prunus mume Pm008898 I 0.867
Pm016093 Prunus mume Pm016093 I 0.887
Pm020879 Prunus mume Pm020879 I 0.848
Pm024587 Prunus mume Pm024587 I 0.887
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.911
AMS Populus trichocarpa POPTR_0009s13860 I 0.868
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.887
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.887
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.898
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I 0.868
POPTR_0018s13850 Populus trichocarpa POPTR_0018s13850 I 0.874
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.887
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.867
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.887
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I 0.848
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.868
SapurV1A.0140s0240 Salix purpurea SapurV1A.0140s0240 I 0.874
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.898
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.868
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.887
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.887
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.887
SapurV1A.3355s0010 Salix purpurea SapurV1A.3355s0010 I 0.874
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.898
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.887
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.881
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.887
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.887
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.887
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.891
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.891
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.891
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.891
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.887
SELMODRAFT_77288 Selaginella moellendorffii SELMODRAFT_77288 N 0.853
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.887
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.887
Si001874m.g Setaria italica Si001874m.g I 0.887
Si006199m.g Setaria italica Si006199m.g I 0.867
Si006500m.g Setaria italica Si006500m.g I 0.881
Si019518m.g Setaria italica Si019518m.g I 0.861
Si026212m.g Setaria italica Si026212m.g I 0.887
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.887
Solyc05g014590.2 Solanum lycopersicum Solyc05g014590.2 I 0.867
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.857
Solyc08g062780.1 Solanum lycopersicum Solyc08g062780.1 I 0.854
TCM_006602 Theobroma cacao TCM_006602 I 0.878
TCM_014741 Theobroma cacao TCM_014741 I 0.887
TCM_017336 Theobroma cacao TCM_017336 I 0.887
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.887
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.887
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.868
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.887
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.857
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.861
Traes_6AS_66A98BA55 Triticum aestivum Traes_6AS_66A98BA55 I 0.857
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.887
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.887
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.887
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.857
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.887
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.898
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.887
VIT_03s0038g02540 Vitis vinifera VIT_03s0038g02540 I 0.858
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.887
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.887