CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_Genewise1.C_510113
(
Physcomitrella patens
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
estExt_Genewise1.C_510113
T048462_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.914
0.938
AMS
M09782_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AMS_01
0.847
0.854
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_510113
bHLH
270
317
AKNLMAERRRRKKLNDRLYTLRSVVPKITKMDRASILGDAIEYLKELL
Links
Other
bHLH
family TFs
Other
Physcomitrella patens
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.914
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.914
SCRM
Arabidopsis thaliana
AT3G26744
D
0.914
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.914
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.914
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.914
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.914
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.914
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.914
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.914
Bra016749
Brassica rapa
Bra016749
I
0.914
Bra019794
Brassica rapa
Bra019794
I
0.914
Bra025226
Brassica rapa
Bra025226
I
0.914
Bra032947
Brassica rapa
Bra032947
I
0.914
Bra034246
Brassica rapa
Bra034246
I
0.914
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.914
F775_14780
Aegilops tauschii
F775_14780
I
0.914
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.914
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.914
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.914
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.914
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.914
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.914
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.914
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.914
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.914
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.914
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.914
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.914
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.914
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.914
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.914
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.914
OBART01G42600
Oryza barthii
OBART01G42600
I
0.914
OBART11G15260
Oryza barthii
OBART11G15260
I
0.914
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.914
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.914
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.914
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.914
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.914
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.914
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.914
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.914
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.914
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.914
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.914
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.914
OS01G0928000
Oryza sativa
OS01G0928000
I
0.914
OS11G0523700
Oryza sativa
OS11G0523700
I
0.914
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.914
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.914
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.914
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.914
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.914
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.914
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.914
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.914
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.914
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.914
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.914
Si001874m.g
Setaria italica
Si001874m.g
I
0.914
Si026212m.g
Setaria italica
Si026212m.g
I
0.914
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.914
TCM_014741
Theobroma cacao
TCM_014741
I
0.914
TCM_017336
Theobroma cacao
TCM_017336
I
0.914
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.914
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.914
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.914
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.914
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.914
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.914
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.914
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.914
Ca_01394
Cicer arietinum
Ca_01394
I
0.914
Cla002682
Citrullus lanatus
Cla002682
I
0.914
Cla003283
Citrullus lanatus
Cla003283
I
0.914
Pm016093
Prunus mume
Pm016093
I
0.914
Pm024587
Prunus mume
Pm024587
I
0.914
30147.m014419
Ricinus communis
30147.m014419
I
0.914
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.914
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.914
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.914
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.914
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.914
mgf012194m
Mimulus guttatus
mgf012194m
I
0.914
mgf015974m
Mimulus guttatus
mgf015974m
I
0.914
mgf016462m
Mimulus guttatus
mgf016462m
I
0.914
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.914
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.914
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.914
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.914
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.914
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.914
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.914
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.914
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.914
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.914
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.914
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.914
MDP0000247912
Malus domestica
MDP0000247912
I
0.914
MDP0000304669
Malus domestica
MDP0000304669
I
0.914
MDP0000662999
Malus domestica
MDP0000662999
I
0.914
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.914
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.914
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.914
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.914
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.914
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.914
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.914
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.914
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.914
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.914
PK06940.1
Cannabis sativa
PK06940.1
I
0.914
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.914
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.914
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.903
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.903
Ca_23892
Cicer arietinum
Ca_23892
I
0.903
Pavir.Ha01426
Panicum virgatum
Pavir.Ha01426
I
0.903
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.890
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.890
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.890
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.890
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.890
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.890
MDP0000219146
Malus domestica
MDP0000219146
I
0.890
PK06841.1
Cannabis sativa
PK06841.1
I
0.890
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.890
SCRM2
Arabidopsis lyrata
Al_scaffold_0001_1326
I
0.888
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.887
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.887
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.887
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.887
BRADI4G17460
Brachypodium distachyon
BRADI4G17460
I
0.884
GLYMA05G38530
Glycine max
GLYMA05G38530
I
0.884
PGSC0003DMG401028788
Solanum tuberosum
PGSC0003DMG401028788
I
0.884
Solyc06g068870.2
Solanum lycopersicum
Solyc06g068870.2
I
0.884
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
0.884
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
0.884
Lus10032542.g
Linum usitatissimum
Lus10032542.g
I
0.884
Lus10043199.g
Linum usitatissimum
Lus10043199.g
I
0.884
30131.m006993
Ricinus communis
30131.m006993
I
0.879
cassava7475.valid.m1
Manihot esculenta
cassava7475.valid.m1
I
0.879
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.877
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.877
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.877
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.874
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.874
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.874
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
0.870
SELMODRAFT_16038
Selaginella moellendorffii
SELMODRAFT_16038
I
0.870
SELMODRAFT_16039
Selaginella moellendorffii
SELMODRAFT_16039
I
0.870
SELMODRAFT_430203
Selaginella moellendorffii
SELMODRAFT_430203
I
0.870
SELMODRAFT_451590
Selaginella moellendorffii
SELMODRAFT_451590
I
0.870
Cla016068
Citrullus lanatus
Cla016068
I
0.870
Pm008898
Prunus mume
Pm008898
I
0.870
Cucsa.010660
Cucumis sativus
Cucsa.010660
I
0.870
e_gw1.25.105.1
Physcomitrella patens
e_gw1.25.105.1
I
0.870
estExt_fgenesh1_pg.C_1590022
Physcomitrella patens
estExt_fgenesh1_pg.C_1590022
I
0.870
AMTR_s00096p00160080
Amborella trichopoda
AMTR_s00096p00160080
I
0.869
estExt_gwp_gw1.C_1820005
Physcomitrella patens
estExt_gwp_gw1.C_1820005
I
0.867
fgenesh1_pg.scaffold_1000274
Physcomitrella patens
fgenesh1_pg.scaffold_1000274
I
0.867
AMTR_s00019p00254380
Amborella trichopoda
AMTR_s00019p00254380
I
0.860
BRADI3G01910
Brachypodium distachyon
BRADI3G01910
I
0.860
F775_15875
Aegilops tauschii
F775_15875
I
0.860
GLYMA13G00480
Glycine max
GLYMA13G00480
I
0.860
GLYMA17G06610
Glycine max
GLYMA17G06610
I
0.860
MLOC_52192
Hordeum vulgare
MLOC_52192
I
0.860
Sb04g001650
Sorghum bicolor
Sb04g001650
I
0.860
Traes_4DS_7B0E8D459
Triticum aestivum
Traes_4DS_7B0E8D459
I
0.860
TRIUR3_16046
Triticum urartu
TRIUR3_16046
I
0.860
Cla023112
Citrullus lanatus
Cla023112
I
0.860
Cucsa.088960
Cucumis sativus
Cucsa.088960
I
0.860
Pavir.Ab00204
Panicum virgatum
Pavir.Ab00204
I
0.860
PRUPE_ppa002978mg
Prunus persica
PRUPE_ppa002978mg
I
0.858
GLYMA16G26291
Glycine max
GLYMA16G26291
I
0.857
PGSC0003DMG400008195
Solanum tuberosum
PGSC0003DMG400008195
I
0.857
Si006500m.g
Setaria italica
Si006500m.g
I
0.857
Solyc08g062780.1
Solanum lycopersicum
Solyc08g062780.1
I
0.857
TCM_006602
Theobroma cacao
TCM_006602
I
0.857
Gorai.008G036900
Gossypium raimondii
Gorai.008G036900
I
0.857
PK03241.1
Cannabis sativa
PK03241.1
I
0.857
Bo01390s040
Brassica oleracea
Bo01390s040
I
0.852
Bo5g016490
Brassica oleracea
Bo5g016490
I
0.852
POPTR_0018s13850
Populus trichocarpa
POPTR_0018s13850
I
0.850
SapurV1A.0140s0240
Salix purpurea
SapurV1A.0140s0240
I
0.850
SapurV1A.3355s0010
Salix purpurea
SapurV1A.3355s0010
I
0.850
MLOC_56814
Hordeum vulgare
MLOC_56814
I
0.849
Ciclev10033428m.g
Citrus clementina
Ciclev10033428m.g
I
0.849
orange1.1g041101m.g
Citrus sinensis
orange1.1g041101m.g
I
0.849
AMS
Arabidopsis thaliana
AT2G16910
D
0.847
Bo3g091780
Brassica oleracea
Bo3g091780
I
0.847
Bo7g016210
Brassica oleracea
Bo7g016210
I
0.847
Bra002004
Brassica rapa
Bra002004
I
0.847
Bra013041
Brassica rapa
Bra013041
I
0.847
AMS
Arabidopsis lyrata
fgenesh2_kg.3__3272__AT2G16910.1
I
0.847
GLYMA10G42830
Glycine max
GLYMA10G42830
I
0.847
GLYMA20G24170
Glycine max
GLYMA20G24170
I
0.847
MTR_1g112680
Medicago truncatula
MTR_1g112680
I
0.847
AMS
Populus trichocarpa
POPTR_0009s13860
I
0.847
Ca_05416
Cicer arietinum
Ca_05416
I
0.847
Ca_23693
Cicer arietinum
Ca_23693
I
0.847
Ca_23694
Cicer arietinum
Ca_23694
I
0.847
cassava2551.valid.m1
Manihot esculenta
cassava2551.valid.m1
I
0.847
cassava2552.valid.m1
Manihot esculenta
cassava2552.valid.m1
I
0.847
mgf018455m
Mimulus guttatus
mgf018455m
I
0.847
Bostr.18351s0148
Boechera stricta
Bostr.18351s0148
I
0.847
Cagra.10862s0002
Capsella grandiflora
Cagra.10862s0002
I
0.847
Carubv10016240m.g
Capsella rubella
Carubv10016240m.g
I
0.847
gene23716-v1.0-hybrid
Fragaria vesca
gene23716-v1.0-hybrid
I
0.847
MDP0000405748
Malus domestica
MDP0000405748
I
0.847
SapurV1A.0218s0460
Salix purpurea
SapurV1A.0218s0460
I
0.847
Thhalv10022620m.g
Eutrema salsugineum
Thhalv10022620m.g
I
0.847
LjSGA_106153.1
Lotus japonicus
LjSGA_106153.1
I
0.847
POPTR_0018s13840
Populus trichocarpa
POPTR_0018s13840
I
0.844
SapurV1A.0001s2820
Salix purpurea
SapurV1A.0001s2820
I
0.844
PGSC0003DMG400017440
Solanum tuberosum
PGSC0003DMG400017440
I
0.843
Si006199m.g
Setaria italica
Si006199m.g
I
0.843
Solyc05g014590.2
Solanum lycopersicum
Solyc05g014590.2
I
0.843
GLYMA09G06770
Glycine max
GLYMA09G06770
I
0.840
GLYMA15G18070
Glycine max
GLYMA15G18070
I
0.840
MTR_2g038040
Medicago truncatula
MTR_2g038040
I
0.840
PGSC0003DMG400004087
Solanum tuberosum
PGSC0003DMG400004087
I
0.840
POPTR_0018s13860
Populus trichocarpa
POPTR_0018s13860
I
0.840
Si019518m.g
Setaria italica
Si019518m.g
I
0.840
Solyc07g018010.2
Solanum lycopersicum
Solyc07g018010.2
I
0.840
TCM_039471
Theobroma cacao
TCM_039471
I
0.840
Traes_6AS_4C2F64614
Triticum aestivum
Traes_6AS_4C2F64614
I
0.840
VIT_11s0052g00100
Vitis vinifera
VIT_11s0052g00100
I
0.840
30198.m000869
Ricinus communis
30198.m000869
I
0.840
cassava2997.m1
Manihot esculenta
cassava2997.m1
I
0.840
mgf024029m
Mimulus guttatus
mgf024029m
I
0.840
Aquca_018_00039
Aquilegia coerulea
Aquca_018_00039
I
0.840
Ciclev10009285m.g
Citrus clementina
Ciclev10009285m.g
I
0.840
Eucgr.C02208
Eucalyptus grandis
Eucgr.C02208
I
0.840
gene17273-v1.0-hybrid
Fragaria vesca
gene17273-v1.0-hybrid
I
0.840
Gorai.009G002200
Gossypium raimondii
Gorai.009G002200
I
0.840
Gorai.013G242800
Gossypium raimondii
Gorai.013G242800
I
0.840
Lus10006951.g
Linum usitatissimum
Lus10006951.g
I
0.840
MDP0000133262
Malus domestica
MDP0000133262
I
0.840
MDP0000318229
Malus domestica
MDP0000318229
I
0.840
orange1.1g025665m.g
Citrus sinensis
orange1.1g025665m.g
I
0.840
SapurV1A.0140s0210
Salix purpurea
SapurV1A.0140s0210
I
0.840