CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_GenewiseH_1.C_3210010
(
Branchiostoma floridae
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
estExt_GenewiseH_1.C_3210010
T048481_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PTF1A
M04156_2.00
Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT
SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX
0.914
0.904
PTF1A
M08736_2.00
Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B
0.914
0.904
Ptf1a
M08757_2.00
Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A
0.914
0.904
Ptf1a
M09470_2.00
Mus musculus
NVVCASSTGB
VCASSTGBBN
Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459
0.914
0.904
PTF1A
M04157_2.00
Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT
SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX
0.914
0.904
Fer1
M03620_2.00
Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB
SELEX
Nitta et al.(2015)
Fer1_1
0.894
0.865
Fer1
M05990_2.00
Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD
B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475
0.894
0.865
Fer1
M05991_2.00
Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW
B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475
0.894
0.865
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_GenewiseH_1.C_3210010
bHLH
66
118
QRQAANLRERRRMQSINDAFDGLRQRIPTLPYEKRLSKVDTLRLAIGYINFLS
Links
Other
bHLH
family TFs
Other
Branchiostoma floridae
TFs
131 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008660
Aedes aegypti
AAEL008660
I
0.870
AALB002674
Anopheles albimanus
AALB002674
I
0.870
AARA001906
Anopheles arabiensis
AARA001906
I
0.870
AATE014019
Anopheles atroparvus
AATE014019
I
0.870
ACEP14483
Atta cephalotes
ACEP14483
I
0.855
ACHR004799
Anopheles christyi
ACHR004799
I
0.870
ACOM034154
Anopheles coluzzii
ACOM034154
I
0.870
ACUA004590
Anopheles culicifacies
ACUA004590
I
0.870
ACYPI37626
Acyrthosiphon pisum
ACYPI37626
I
0.894
ADAC008497
Anopheles darlingi
ADAC008497
I
0.870
ADIR010545
Anopheles dirus
ADIR010545
I
0.870
AEPI006242
Anopheles epiroticus
AEPI006242
I
0.870
AFAF002909
Anopheles farauti
AFAF002909
I
0.870
AFUN008310
Anopheles funestus
AFUN008310
I
0.870
AGAP001448
Anopheles gambiae
AGAP001448
I
0.870
AMAM018725
Anopheles maculatus
AMAM018725
I
0.870
AMEC009154
Anopheles melas
AMEC009154
I
0.870
AMEM011331
Anopheles merus
AMEM011331
I
0.870
AMIN003266
Anopheles minimus
AMIN003266
I
0.870
AQUA006634
Anopheles quadriannulatus
AQUA006634
I
0.870
ASIS019386
Anopheles sinensis
ASIS019386
I
0.870
BGLB003958
Biomphalaria glabrata
BGLB003958
I
0.914
CapteG59283
Capitella teleta
CapteG59283
I
0.846
Cflo_06174--XP_001120620.1_APIME
Camponotus floridanus
Cflo_06174--XP_001120620.1_APIME
I
0.855
CGI_10017809
Crassostrea gigas
CGI_10017809
I
0.894
CLEC012470
Cimex lectularius
CLEC012470
I
0.894
CPIJ006258
Culex quinquefasciatus
CPIJ006258
I
0.870
CpipJ_CPIJ006258
Culex pipiens
CpipJ_CPIJ006258
I
0.870
csin111295
Clonorchis sinensis
csin111295
I
0.870
D915_00775
Fasciola hepatica
D915_00775
I
0.870
D917_00545
Trichinella nativa
D917_00545
I
0.890
D918_01499
Trichuris suis
D918_01499
I
0.870
DAPPUDRAFT_18360
Daphnia pulex
DAPPUDRAFT_18360
I
0.890
DILT_0001058801
Diphyllobothrium latum
DILT_0001058801
I
0.857
ECANG7_07852
Echinococcus canadensis
ECANG7_07852
I
0.846
ECPE_0000418201
Echinostoma caproni
ECPE_0000418201
I
0.870
EFV58245
Trichinella spiralis
EFV58245
I
0.890
EmuJ_000998300
Echinococcus multilocularis
EmuJ_000998300
I
0.846
PTF1A
Anolis carolinensis
ENSACAG00000008717
I
0.913
ENSAMEG00000006374
Ailuropoda melanoleuca
ENSAMEG00000006374
I
0.914
ENSAMXG00000008222
Astyanax mexicanus
ENSAMXG00000008222
I
0.890
PTF1A
Bos taurus
ENSBTAG00000047315
I
0.914
PTF1A
Callithrix jacchus
ENSCJAG00000007862
I
0.914
PTF1A
Cavia porcellus
ENSCPOG00000022828
I
0.914
ENSCSAG00000012422
Chlorocebus sabaeus
ENSCSAG00000012422
I
0.914
ptf1a
Danio rerio
ENSDARG00000014479
I
0.890
PTF1A
Dasypus novemcinctus
ENSDNOG00000035978
I
0.914
PTF1A
Equus caballus
ENSECAG00000012711
I
0.914
ENSFALG00000007280
Ficedula albicollis
ENSFALG00000007280
I
0.914
PTF1A
Homo sapiens
ENSG00000168267
D
0.914
ptf1a
Gasterosteus aculeatus
ENSGACG00000014760
I
0.890
PTF1A
Gorilla gorilla
ENSGGOG00000015210
I
0.914
ENSGMOG00000016849
Gadus morhua
ENSGMOG00000016849
I
0.890
ENSLACG00000013727
Latimeria chalumnae
ENSLACG00000013727
I
0.914
PTF1A
Loxodonta africana
ENSLAFG00000012682
I
0.914
ENSLOCG00000003186
Lepisosteus oculatus
ENSLOCG00000003186
I
0.890
ENSMEUG00000004292
Macropus eugenii
ENSMEUG00000004292
I
0.914
PTF1A
Myotis lucifugus
ENSMLUG00000010122
I
0.914
PTF1A
Monodelphis domestica
ENSMODG00000008946
I
0.914
Ptf1a
Mus musculus
ENSMUSG00000026735
D
0.914
ENSNLEG00000012897
Nomascus leucogenys
ENSNLEG00000012897
I
0.914
PTF1A
Otolemur garnettii
ENSOGAG00000024685
I
0.914
ENSONIG00000016978
Oreochromis niloticus
ENSONIG00000016978
I
0.890
ptf1a
Oryzias latipes
ENSORLG00000008277
I
0.890
ENSPANG00000023093
Papio anubis
ENSPANG00000023093
I
0.914
PTF1A
Procavia capensis
ENSPCAG00000005440
I
0.914
ENSPFOG00000002486
Poecilia formosa
ENSPFOG00000002486
I
0.890
ENSPMAG00000003727
Petromyzon marinus
ENSPMAG00000003727
I
0.870
ENSPPYG00000002150
Pongo abelii
ENSPPYG00000002150
I
0.914
ENSPSIG00000007810
Pelodiscus sinensis
ENSPSIG00000007810
I
0.914
ENSPVAG00000013738
Pteropus vampyrus
ENSPVAG00000013738
I
0.914
Ptf1a
Rattus norvegicus
ENSRNOG00000016902
I
0.914
PTF1A
Sus scrofa
ENSSSCG00000030662
I
0.914
ENSSTOG00000022679
Ictidomys tridecemlineatus
ENSSTOG00000022679
I
0.914
PTF1A
Tupaia belangeri
ENSTBEG00000005210
I
0.879
ENSTGUG00000001180
Taeniopygia guttata
ENSTGUG00000001180
I
0.914
ptf1a
Takifugu rubripes
ENSTRUG00000007713
I
0.890
PTF1A
Tursiops truncatus
ENSTTRG00000016843
I
0.914
ENSXMAG00000015151
Xiphophorus maculatus
ENSXMAG00000015151
I
0.890
estExt_fgenesh2_pg.C_640081
Branchiostoma floridae
estExt_fgenesh2_pg.C_640081
I
0.914
estExt_GenewiseH_1.C_3210011
Branchiostoma floridae
estExt_GenewiseH_1.C_3210011
I
0.914
Fer1
Drosophila melanogaster
FBgn0037475
D
0.894
GF17655
Drosophila ananassae
FBgn0094673
I
0.894
GG13863
Drosophila erecta
FBgn0106126
I
0.894
GH19006
Drosophila grimshawi
FBgn0126473
I
0.894
GI23061
Drosophila mojavensis
FBgn0145788
I
0.894
GL12422
Drosophila persimilis
FBgn0150028
I
0.894
GM10936
Drosophila sechellia
FBgn0165881
I
0.894
GD19915
Drosophila simulans
FBgn0191398
I
0.894
GJ24574
Drosophila virilis
FBgn0211653
I
0.894
GK14521
Drosophila willistoni
FBgn0216527
I
0.894
GE24907
Drosophila yakuba
FBgn0242002
I
0.894
GA27498
Drosophila pseudoobscura
FBgn0248864
I
0.894
GB41913
Apis mellifera
GB41913
I
0.855
HelroG86431
Helobdella robusta
HelroG86431
I
0.870
HmN_000218700
Hymenolepis microstoma
HmN_000218700
I
0.866
Hsal_01096--XP_001120922.1_APIME
Harpegnathos saltator
Hsal_01096--XP_001120922.1_APIME
I
0.855
ISCW003737
Ixodes scapularis
ISCW003737
I
0.890
KGM_14030
Danaus plexippus
KGM_14030
I
0.890
L798_11980
Zootermopsis nevadensis
L798_11980
I
0.914
LCUP002382
Lucilia cuprina
LCUP002382
I
0.894
LDEC016362
Leptinotarsa decemlineata
LDEC016362
I
0.914
LLOJ003726
Lutzomyia longipalpis
LLOJ003726
I
0.870
LLOJ004204
Lutzomyia longipalpis
LLOJ004204
I
0.870
LLOJ005004
Lutzomyia longipalpis
LLOJ005004
I
0.870
LotgiG66849
Lottia gigantea
LotgiG66849
I
0.890
MCOS_0000879301
Mesocestoides corti
MCOS_0000879301
I
0.846
MDOA013156
Musca domestica
MDOA013156
I
0.894
MESCA008421
Megaselia scalaris
MESCA008421
I
0.870
NEMVEDRAFT_v1g97005
Nematostella vectensis
NEMVEDRAFT_v1g97005
I
0.870
Ocbimv22012139m.g
Octopus bimaculoides
Ocbimv22012139m.g
I
0.870
PHUM498120
Pediculus humanus
PHUM498120
I
0.914
PPAI005132
Phlebotomus papatasi
PPAI005132
I
0.870
Pvit_04136
Pogona vitticeps
Pvit_04136
I
0.914
RPRC001881
Rhodnius prolixus
RPRC001881
I
0.894
Sakowv30041452m.g
Saccoglossus kowalevskii
Sakowv30041452m.g
I
0.894
SBAD_0000858001
Soboliphyme baturini
SBAD_0000858001
I
0.868
SMAR009985
Strigamia maritima
SMAR009985
I
0.890
SMAR011911
Strigamia maritima
SMAR011911
I
0.890
SMU15024587
Schmidtea mediterranea
SMU15024587
I
0.870
SMU15028020
Schmidtea mediterranea
SMU15028020
I
0.870
SMU15033768
Schmidtea mediterranea
SMU15033768
I
0.869
SPU_002677
Strongylocentrotus purpuratus
SPU_002677
I
0.866
SROB_0001629701
Schistosoma rodhaini
SROB_0001629701
I
0.870
T265_12589
Opisthorchis viverrini
T265_12589
I
0.870
TC014105
Tribolium castaneum
TC014105
I
0.914
TMUE_s0036001100
Trichuris muris
TMUE_s0036001100
I
0.870
TTRE_0000022101
Trichuris trichiura
TTRE_0000022101
I
0.870
ptf1a
Xenopus tropicalis
XB-GENE-484425
I
0.914
ptf1a.S
Xenopus laevis
XB-GENE-6466546
I
0.914
YQE_02105
Dendroctonus ponderosae
YQE_02105
I
0.914