CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.10040s0284
(
Boechera stricta
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Bostr.10040s0284
T049051_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN
NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.914
1.000
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.914
1.000
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC
GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.901
0.882
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.875
0.863
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.875
0.863
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN
NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.868
0.804
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH
DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.862
0.843
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.862
0.843
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.862
0.804
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY
RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.862
0.804
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.851
0.804
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.851
0.784
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT
ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.851
0.784
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.10040s0284.1.p
bHLH
145
195
ATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ
Links
Other
bHLH
family TFs
Other
Boechera stricta
TFs
874 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA020074
Oryza indica
BGIOSGA020074
N
GRMZM2G037286
Zea mays
GRMZM2G037286
N
LPERR05G16610
Leersia perrieri
LPERR05G16610
N
OGLUM05G21920
Oryza glumaepatula
OGLUM05G21920
N
OMERI05G18690
Oryza meridionalis
OMERI05G18690
N
OPUNC05G18380
Oryza punctata
OPUNC05G18380
N
ORGLA05G0180800
Oryza glaberrima
ORGLA05G0180800
N
ORUFI05G21990
Oryza rufipogon
ORUFI05G21990
N
OS05G0485400
Oryza sativa
OS05G0485400
N
Pavir.J06020
Panicum virgatum
Pavir.J06020
N
Pavir.J13985
Panicum virgatum
Pavir.J13985
N
Sb09g023750
Sorghum bicolor
Sb09g023750
N
Si021890m.g
Setaria italica
Si021890m.g
N