CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.17775s0015
(
Boechera stricta
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Bostr.17775s0015
T049085_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM3
M01711_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8591
0.890
0.962
BIM3
M06741_2.00
Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH
Dap-seq
OMalley et al.(2016)
BIM3_col_a
0.890
0.962
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.17775s0015.1.p
bHLH
34
86
CRAKHSETEQRRRCKINERFQSLMDIIPQNQNDQKRDKASFLLEVIEYIHFLQ
Links
Other
bHLH
family TFs
Other
Boechera stricta
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BIM3
Arabidopsis thaliana
AT5G38860
D
0.890
BIM3
Arabidopsis lyrata
scaffold_704174.1
I
0.890
Cagra.2539s0002
Capsella grandiflora
Cagra.2539s0002
I
0.890
Carubv10006445m.g
Capsella rubella
Carubv10006445m.g
I
0.890
Lus10034358.g
Linum usitatissimum
Lus10034358.g
I
0.861