CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1670s0006
(
Capsella grandiflora
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cagra.1670s0006
T049263_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G25400
M09786_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G25400_01
0.850
0.635
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1670s0006.1.p
bHLH
80
132
KKLKHRDIERQRRQEVSSLFKSLRSLLPFQYIQGKRSTSDHIFQAVQYIKDLQ
Links
Other
bHLH
family TFs
Other
Capsella grandiflora
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH125
Arabidopsis thaliana
AT1G62975
I
0.914
fgenesh2_kg.2__186__AT1G62975.1
Arabidopsis lyrata
fgenesh2_kg.2__186__AT1G62975.1
I
0.914
Bostr.22157s0026
Boechera stricta
Bostr.22157s0026
I
0.914
Carubv10020804m.g
Capsella rubella
Carubv10020804m.g
I
0.914
Thhalv10009922m.g
Eutrema salsugineum
Thhalv10009922m.g
I
0.863
Bostr.13671s0206
Boechera stricta
Bostr.13671s0206
I
0.862
AT4G25400
Arabidopsis thaliana
AT4G25400
D
0.850
AT5G51780
Arabidopsis thaliana
AT5G51780
I
0.850
Bo7g110280
Brassica oleracea
Bo7g110280
I
0.850
fgenesh2_kg.8__1059__AT5G51780.1
Arabidopsis lyrata
fgenesh2_kg.8__1059__AT5G51780.1
I
0.850
Bostr.7867s0349
Boechera stricta
Bostr.7867s0349
I
0.850
Thhalv10026341m.g
Eutrema salsugineum
Thhalv10026341m.g
I
0.850