CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1822s0081
(
Capsella grandiflora
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cagra.1822s0081
T049271_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1822s0081.1.p
bHLH
180
223
LYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQ
Links
Other
bHLH
family TFs
Other
Capsella grandiflora
TFs
209 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH54
Arabidopsis thaliana
AT1G27740
N
0.914
Bo3g142890
Brassica oleracea
Bo3g142890
N
0.914
Bo5g052310
Brassica oleracea
Bo5g052310
N
0.914
Bo7g048630
Brassica oleracea
Bo7g048630
N
0.914
Bra010921
Brassica rapa
Bra010921
N
0.914
Bra030063
Brassica rapa
Bra030063
N
0.914
Bra032846
Brassica rapa
Bra032846
N
0.914
F775_27628
Aegilops tauschii
F775_27628
N
0.914
RSL4
Arabidopsis lyrata
fgenesh2_kg.1__2933__AT1G27740.1
N
0.914
Traes_4AL_6A6EC9A6A
Triticum aestivum
Traes_4AL_6A6EC9A6A
N
0.914
Traes_4BS_9BFCC52AD
Triticum aestivum
Traes_4BS_9BFCC52AD
N
0.914
Traes_4DS_7488F4608
Triticum aestivum
Traes_4DS_7488F4608
N
0.914
Pm021172
Prunus mume
Pm021172
N
0.914
mgf019332m
Mimulus guttatus
mgf019332m
N
0.914
Bostr.15697s0100
Boechera stricta
Bostr.15697s0100
N
0.914
Carubv10011072m.g
Capsella rubella
Carubv10011072m.g
N
0.914
gene25555-v1.0-hybrid
Fragaria vesca
gene25555-v1.0-hybrid
N
0.914
Thhalv10009862m.g
Eutrema salsugineum
Thhalv10009862m.g
N
0.914
chr5.CM0096.500.nd
Lotus japonicus
chr5.CM0096.500.nd
N
0.914
chr5.CM0200.480.nc
Lotus japonicus
chr5.CM0200.480.nc
N
0.914
MDP0000946515
Malus domestica
MDP0000946515
N
0.913
MDP0000131874
Malus domestica
MDP0000131874
N
0.892
BRADI1G70860
Brachypodium distachyon
BRADI1G70860
N
0.882
MTR_3g103030
Medicago truncatula
MTR_3g103030
N
0.882
MLOC_67369
Hordeum vulgare
MLOC_67369
N
0.880
Traes_4AS_7530AAEB4
Triticum aestivum
Traes_4AS_7530AAEB4
N
0.880
Traes_4DL_61AE80723
Triticum aestivum
Traes_4DL_61AE80723
N
0.880
TRIUR3_01454
Triticum urartu
TRIUR3_01454
N
0.880
AMTR_s00164p00062120
Amborella trichopoda
AMTR_s00164p00062120
N
0.879
AT2G14760
Arabidopsis thaliana
AT2G14760
N
0.879
BHLH85
Arabidopsis thaliana
AT4G33880
N
0.879
BGIOSGA023988
Oryza indica
BGIOSGA023988
N
0.879
BGIOSGA035917
Oryza indica
BGIOSGA035917
N
0.879
Bo1g007780
Brassica oleracea
Bo1g007780
N
0.879
Bo3g169400
Brassica oleracea
Bo3g169400
N
0.879
Bo7g116460
Brassica oleracea
Bo7g116460
N
0.879
Bra011476
Brassica rapa
Bra011476
N
0.879
Bra034587
Brassica rapa
Bra034587
N
0.879
Bra036969
Brassica rapa
Bra036969
N
0.879
BRADI1G14600
Brachypodium distachyon
BRADI1G14600
N
0.879
BRADI4G03070
Brachypodium distachyon
BRADI4G03070
N
0.879
F775_02582
Aegilops tauschii
F775_02582
N
0.879
RSL2
Arabidopsis lyrata
fgenesh2_kg.7__724__AT4G33880.1
N
0.879
GLYMA10G40350
Glycine max
GLYMA10G40350
N
0.879
GLYMA10G40360
Glycine max
GLYMA10G40360
N
0.879
GLYMA14G09781
Glycine max
GLYMA14G09781
N
0.879
GLYMA17G35423
Glycine max
GLYMA17G35423
N
0.879
GLYMA20G26980
Glycine max
GLYMA20G26980
N
0.879
GLYMA20G26991
Glycine max
GLYMA20G26991
N
0.879
GRMZM2G395549
Zea mays
GRMZM2G395549
N
0.879
GSMUA_Achr3G18870_001
Musa acuminata
GSMUA_Achr3G18870_001
N
0.879
GSMUA_Achr4G23240_001
Musa acuminata
GSMUA_Achr4G23240_001
N
0.879
GSMUA_Achr6G07760_001
Musa acuminata
GSMUA_Achr6G07760_001
N
0.879
LPERR07G17840
Leersia perrieri
LPERR07G17840
N
0.879
LPERR12G14550
Leersia perrieri
LPERR12G14550
N
0.879
MLOC_60270
Hordeum vulgare
MLOC_60270
N
0.879
MLOC_76486
Hordeum vulgare
MLOC_76486
N
0.879
MTR_1g018090
Medicago truncatula
MTR_1g018090
N
0.879
MTR_1g106460
Medicago truncatula
MTR_1g106460
N
0.879
MTR_1g106480
Medicago truncatula
MTR_1g106480
N
0.879
MTR_5g005110
Medicago truncatula
MTR_5g005110
N
0.879
OB07G26210
Oryza brachyantha
OB07G26210
N
0.879
OB12G24200
Oryza brachyantha
OB12G24200
N
0.879
OBART12G17400
Oryza barthii
OBART12G17400
N
0.879
OGLUM07G20330
Oryza glumaepatula
OGLUM07G20330
N
0.879
OGLUM09G03740
Oryza glumaepatula
OGLUM09G03740
N
0.879
OLONG_006157
Oryza longistaminata
OLONG_006157
N
0.879
OLONG_014997
Oryza longistaminata
OLONG_014997
N
0.879
OMERI07G17220
Oryza meridionalis
OMERI07G17220
N
0.879
OMERI12G12030
Oryza meridionalis
OMERI12G12030
N
0.879
ONIVA07G18960
Oryza nivara
ONIVA07G18960
N
0.879
ONIVA12G15960
Oryza nivara
ONIVA12G15960
N
0.879
OPUNC07G19390
Oryza punctata
OPUNC07G19390
N
0.879
OPUNC12G15720
Oryza punctata
OPUNC12G15720
N
0.879
ORGLA12G0149000
Oryza glaberrima
ORGLA12G0149000
N
0.879
ORUFI07G21430
Oryza rufipogon
ORUFI07G21430
N
0.879
ORUFI12G19280
Oryza rufipogon
ORUFI12G19280
N
0.879
OS07G0588400
Oryza sativa
OS07G0588400
N
0.879
OS12G0589000
Oryza sativa
OS12G0589000
N
0.879
PGSC0003DMG400021526
Solanum tuberosum
PGSC0003DMG400021526
N
0.879
PGSC0003DMG400036714
Solanum tuberosum
PGSC0003DMG400036714
N
0.879
POPTR_0001s30150
Populus trichocarpa
POPTR_0001s30150
N
0.879
POPTR_0002s12000
Populus trichocarpa
POPTR_0002s12000
N
0.879
POPTR_0009s09210
Populus trichocarpa
POPTR_0009s09210
N
0.879
POPTR_0014s01730
Populus trichocarpa
POPTR_0014s01730
N
0.879
PRUPE_ppa015160mg
Prunus persica
PRUPE_ppa015160mg
N
0.879
Sb01g007160
Sorghum bicolor
Sb01g007160
N
0.879
Si039720m.g
Setaria italica
Si039720m.g
N
0.879
Solyc01g107140.1
Solanum lycopersicum
Solyc01g107140.1
N
0.879
Solyc04g077960.1
Solanum lycopersicum
Solyc04g077960.1
N
0.879
TCM_007220
Theobroma cacao
TCM_007220
N
0.879
TCM_034717
Theobroma cacao
TCM_034717
N
0.879
Traes_5AS_5B9D5E067
Triticum aestivum
Traes_5AS_5B9D5E067
N
0.879
Traes_5DS_51467BEB4
Triticum aestivum
Traes_5DS_51467BEB4
N
0.879
TRIUR3_24341
Triticum urartu
TRIUR3_24341
N
0.879
VIT_03s0091g00730
Vitis vinifera
VIT_03s0091g00730
N
0.879
VIT_18s0001g09210
Vitis vinifera
VIT_18s0001g09210
N
0.879
Ca_01588
Cicer arietinum
Ca_01588
N
0.879
Ca_05644
Cicer arietinum
Ca_05644
N
0.879
Ca_11909
Cicer arietinum
Ca_11909
N
0.879
Ca_18366
Cicer arietinum
Ca_18366
N
0.879
Cla016346
Citrullus lanatus
Cla016346
N
0.879
Cla020918
Citrullus lanatus
Cla020918
N
0.879
Cla022968
Citrullus lanatus
Cla022968
N
0.879
Pm005392
Prunus mume
Pm005392
N
0.879
28152.m000914
Ricinus communis
28152.m000914
N
0.879
30170.m013749
Ricinus communis
30170.m013749
N
0.879
cassava14986.m1
Manihot esculenta
cassava14986.m1
N
0.879
cassava20440.m1
Manihot esculenta
cassava20440.m1
N
0.879
cassava25589.m1
Manihot esculenta
cassava25589.m1
N
0.879
cassava38950.m1
Manihot esculenta
cassava38950.m1
N
0.879
Cucsa.097490
Cucumis sativus
Cucsa.097490
N
0.879
Cucsa.219180
Cucumis sativus
Cucsa.219180
N
0.879
Cucsa.352750
Cucumis sativus
Cucsa.352750
N
0.879
mgf018282m
Mimulus guttatus
mgf018282m
N
0.879
mgf022238m
Mimulus guttatus
mgf022238m
N
0.879
mgf024863m
Mimulus guttatus
mgf024863m
N
0.879
Aquca_017_00066
Aquilegia coerulea
Aquca_017_00066
N
0.879
Aquca_042_00162
Aquilegia coerulea
Aquca_042_00162
N
0.879
Aquca_042_00163
Aquilegia coerulea
Aquca_042_00163
N
0.879
Bostr.2199s0029
Boechera stricta
Bostr.2199s0029
N
0.879
Bostr.7867s1234
Boechera stricta
Bostr.7867s1234
N
0.879
Cagra.1305s0010
Capsella grandiflora
Cagra.1305s0010
N
0.879
Cagra.9228s0001
Capsella grandiflora
Cagra.9228s0001
N
0.879
Carubv10006623m.g
Capsella rubella
Carubv10006623m.g
N
0.879
Carubv10015484m.g
Capsella rubella
Carubv10015484m.g
N
0.879
Ciclev10003450m.g
Citrus clementina
Ciclev10003450m.g
N
0.879
Ciclev10030309m.g
Citrus clementina
Ciclev10030309m.g
N
0.879
Eucgr.I01069
Eucalyptus grandis
Eucgr.I01069
N
0.879
evm.TU.supercontig_106.57
Carica papaya
evm.TU.supercontig_106.57
N
0.879
evm.TU.supercontig_142.14
Carica papaya
evm.TU.supercontig_142.14
N
0.879
gene02560-v1.0-hybrid
Fragaria vesca
gene02560-v1.0-hybrid
N
0.879
Gorai.005G231900
Gossypium raimondii
Gorai.005G231900
N
0.879
Gorai.009G219100
Gossypium raimondii
Gorai.009G219100
N
0.879
Gorai.010G025400
Gossypium raimondii
Gorai.010G025400
N
0.879
Lus10001068.g
Linum usitatissimum
Lus10001068.g
N
0.879
Lus10004315.g
Linum usitatissimum
Lus10004315.g
N
0.879
MDP0000145825
Malus domestica
MDP0000145825
N
0.879
MDP0000198037
Malus domestica
MDP0000198037
N
0.879
MDP0000573178
Malus domestica
MDP0000573178
N
0.879
orange1.1g036928m.g
Citrus sinensis
orange1.1g036928m.g
N
0.879
orange1.1g047654m.g
Citrus sinensis
orange1.1g047654m.g
N
0.879
Pavir.Ia00352
Panicum virgatum
Pavir.Ia00352
N
0.879
Pavir.Ia04640
Panicum virgatum
Pavir.Ia04640
N
0.879
Pavir.Ib00696
Panicum virgatum
Pavir.Ib00696
N
0.879
Pavir.J00626
Panicum virgatum
Pavir.J00626
N
0.879
SapurV1A.0005s0400
Salix purpurea
SapurV1A.0005s0400
N
0.879
SapurV1A.0019s0320
Salix purpurea
SapurV1A.0019s0320
N
0.879
SapurV1A.0476s0200
Salix purpurea
SapurV1A.0476s0200
N
0.879
Thhalv10026786m.g
Eutrema salsugineum
Thhalv10026786m.g
N
0.879
PK01802.1
Cannabis sativa
PK01802.1
N
0.879
chr1.CM0088.610.nd
Lotus japonicus
chr1.CM0088.610.nd
N
0.879
BGIOSGA011251
Oryza indica
BGIOSGA011251
N
0.877
LPERR11G16970
Leersia perrieri
LPERR11G16970
N
0.877
OB03G17860
Oryza brachyantha
OB03G17860
N
0.877
OBART03G07520
Oryza barthii
OBART03G07520
N
0.877
OGLUM03G07680
Oryza glumaepatula
OGLUM03G07680
N
0.877
OLONG_008046
Oryza longistaminata
OLONG_008046
N
0.877
OMERI03G07360
Oryza meridionalis
OMERI03G07360
N
0.877
ONIVA03G07980
Oryza nivara
ONIVA03G07980
N
0.877
OPUNC03G07300
Oryza punctata
OPUNC03G07300
N
0.877
ORGLA03G0073500
Oryza glaberrima
ORGLA03G0073500
N
0.877
ORUFI03G07580
Oryza rufipogon
ORUFI03G07580
N
0.877
OS03G0205300
Oryza sativa
OS03G0205300
N
0.877
PGSC0003DMG400039299
Solanum tuberosum
PGSC0003DMG400039299
N
0.877
Sb05g025230
Sorghum bicolor
Sb05g025230
N
0.877
Eucgr.F02259
Eucalyptus grandis
Eucgr.F02259
N
0.877
Eucgr.G01234
Eucalyptus grandis
Eucgr.G01234
N
0.877
GSMUA_Achr2G17130_001
Musa acuminata
GSMUA_Achr2G17130_001
N
0.876
gene25554-v1.0-hybrid
Fragaria vesca
gene25554-v1.0-hybrid
N
0.870
BGIOSGA010239
Oryza indica
BGIOSGA010239
N
0.868
GRMZM2G057260
Zea mays
GRMZM2G057260
N
0.868
GRMZM2G383841
Zea mays
GRMZM2G383841
N
0.868
LPERR03G21650
Leersia perrieri
LPERR03G21650
N
0.868
OB03G34210
Oryza brachyantha
OB03G34210
N
0.868
OBART03G26170
Oryza barthii
OBART03G26170
N
0.868
OGLUM03G27050
Oryza glumaepatula
OGLUM03G27050
N
0.868
OLONG_010636
Oryza longistaminata
OLONG_010636
N
0.868
OMERI03G23570
Oryza meridionalis
OMERI03G23570
N
0.868
ONIVA03G27180
Oryza nivara
ONIVA03G27180
N
0.868
OPUNC03G23870
Oryza punctata
OPUNC03G23870
N
0.868
ORGLA03G0242600
Oryza glaberrima
ORGLA03G0242600
N
0.868
ORUFI03G27070
Oryza rufipogon
ORUFI03G27070
N
0.868
Sb02g037990
Sorghum bicolor
Sb02g037990
N
0.868
Si032445m.g
Setaria italica
Si032445m.g
N
0.868
Pavir.Ba01059
Panicum virgatum
Pavir.Ba01059
N
0.868
Pavir.Bb01173
Panicum virgatum
Pavir.Bb01173
N
0.868
fgenesh2_kg.3__3067__AT2G14760.1
Arabidopsis lyrata
fgenesh2_kg.3__3067__AT2G14760.1
N
0.866
F775_02177
Aegilops tauschii
F775_02177
N
0.864
F775_02178
Aegilops tauschii
F775_02178
N
0.864
TRIUR3_35464
Triticum urartu
TRIUR3_35464
N
0.864
GLYMA04G04801
Glycine max
GLYMA04G04801
N
0.859
GSMUA_Achr9G09600_001
Musa acuminata
GSMUA_Achr9G09600_001
N
0.859
Thhalv10003393m.g
Eutrema salsugineum
Thhalv10003393m.g
N
0.859
Traes_4BL_4B8CA74B8
Triticum aestivum
Traes_4BL_4B8CA74B8
N
0.856
GSMUA_AchrUn_randomG07080_001
Musa acuminata
GSMUA_AchrUn_randomG07080_001
N
0.855
Traes_5BS_0F8DBB33D
Triticum aestivum
Traes_5BS_0F8DBB33D
N
0.855
GSMUA_Achr6G16890_001
Musa acuminata
GSMUA_Achr6G16890_001
N
0.853
BRADI1G22960
Brachypodium distachyon
BRADI1G22960
N
0.847
F775_02706
Aegilops tauschii
F775_02706
N
0.847
MLOC_74022
Hordeum vulgare
MLOC_74022
N
0.847
Traes_2AS_9A3F73BE3
Triticum aestivum
Traes_2AS_9A3F73BE3
N
0.847
Traes_2BS_659F9ABB9
Triticum aestivum
Traes_2BS_659F9ABB9
N
0.847
Traes_2DS_7C9C33E09
Triticum aestivum
Traes_2DS_7C9C33E09
N
0.847
TRIUR3_17670
Triticum urartu
TRIUR3_17670
N
0.847
estExt_fgenesh1_pg.C_600113
Physcomitrella patens
estExt_fgenesh1_pg.C_600113
N
0.845
fgenesh1_pg.scaffold_164000047
Physcomitrella patens
fgenesh1_pg.scaffold_164000047
N
0.845
Traes_5AL_ED57961C7
Triticum aestivum
Traes_5AL_ED57961C7
N
0.838
Traes_5DL_3BA7EE3F0
Triticum aestivum
Traes_5DL_3BA7EE3F0
N
0.838