CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2248s0016
(
Capsella grandiflora
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cagra.2248s0016
T049280_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G25400
M09786_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G25400_01
0.866
0.846
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2248s0016.1.p
bHLH
27
79
EKVVHKEVEKQRRLEMASLYASLRSLLPLEFIQGKRSTSDQLNGAVNYIEYLE
Links
Other
bHLH
family TFs
Other
Capsella grandiflora
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10006264m.g
Capsella rubella
Carubv10006264m.g
I
0.914
Bra022562
Brassica rapa
Bra022562
I
0.869
AT4G25400
Arabidopsis thaliana
AT4G25400
D
0.866
Bostr.7867s0349
Boechera stricta
Bostr.7867s0349
I
0.866
Bo2g048240
Brassica oleracea
Bo2g048240
I
0.857
Ciclev10006628m.g
Citrus clementina
Ciclev10006628m.g
I
0.848
orange1.1g036406m.g
Citrus sinensis
orange1.1g036406m.g
I
0.848
Eucgr.F04119
Eucalyptus grandis
Eucgr.F04119
I
0.846
AT5G51780
Arabidopsis thaliana
AT5G51780
I
0.845
Bo7g110280
Brassica oleracea
Bo7g110280
I
0.845
fgenesh2_kg.8__1059__AT5G51780.1
Arabidopsis lyrata
fgenesh2_kg.8__1059__AT5G51780.1
I
0.845
Thhalv10026341m.g
Eutrema salsugineum
Thhalv10026341m.g
I
0.845