Cagra.2248s0016 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.2248s0016 T049280_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G25400
M09786_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G25400_01 		0.866 0.846
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2248s0016.1.p bHLH 27 79

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10006264m.g Capsella rubella Carubv10006264m.g I 0.914
Bra022562 Brassica rapa Bra022562 I 0.869
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.866
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.866
Bo2g048240 Brassica oleracea Bo2g048240 I 0.857
Ciclev10006628m.g Citrus clementina Ciclev10006628m.g I 0.848
orange1.1g036406m.g Citrus sinensis orange1.1g036406m.g I 0.848
Eucgr.F04119 Eucalyptus grandis Eucgr.F04119 I 0.846
AT5G51780 Arabidopsis thaliana AT5G51780 I 0.845
Bo7g110280 Brassica oleracea Bo7g110280 I 0.845
fgenesh2_kg.8__1059__AT5G51780.1 Arabidopsis lyrata fgenesh2_kg.8__1059__AT5G51780.1 I 0.845
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.845