CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2507s0001
(
Capsella grandiflora
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cagra.2507s0001
T049288_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2507s0001.1.p
bHLH
280
320
KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLH
Cagra.2507s0001.2.p
bHLH
279
319
KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLH
Links
Other
bHLH
family TFs
Other
Capsella grandiflora
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH112
Arabidopsis thaliana
AT1G61660
N
0.914
Bo1g098400
Brassica oleracea
Bo1g098400
N
0.914
Bo9g041010
Brassica oleracea
Bo9g041010
N
0.914
Bra027080
Brassica rapa
Bra027080
N
0.914
Bra031413
Brassica rapa
Bra031413
N
0.914
fgenesh2_kg.2__291__AT1G61660.1
Arabidopsis lyrata
fgenesh2_kg.2__291__AT1G61660.1
N
0.914
Bostr.10040s0018
Boechera stricta
Bostr.10040s0018
N
0.914
Carubv10020420m.g
Capsella rubella
Carubv10020420m.g
N
0.914
Thhalv10023487m.g
Eutrema salsugineum
Thhalv10023487m.g
N
0.914
cassava33658.m1
Manihot esculenta
cassava33658.m1
N
0.891
BGIOSGA000686
Oryza indica
BGIOSGA000686
N
0.876
BGIOSGA017200
Oryza indica
BGIOSGA017200
N
0.876
BGIOSGA020126
Oryza indica
BGIOSGA020126
N
0.876
BGIOSGA020128
Oryza indica
BGIOSGA020128
N
0.876
F775_12027
Aegilops tauschii
F775_12027
N
0.876
F775_20405
Aegilops tauschii
F775_20405
N
0.876
GLYMA13G32320
Glycine max
GLYMA13G32320
N
0.876
GLYMA15G07010
Glycine max
GLYMA15G07010
N
0.876
GRMZM2G004732
Zea mays
GRMZM2G004732
N
0.876
GRMZM2G155217
Zea mays
GRMZM2G155217
N
0.876
GRMZM2G313058
Zea mays
GRMZM2G313058
N
0.876
GRMZM2G440529
Zea mays
GRMZM2G440529
N
0.876
GSMUA_Achr10G04860_001
Musa acuminata
GSMUA_Achr10G04860_001
N
0.876
GSMUA_Achr11G18680_001
Musa acuminata
GSMUA_Achr11G18680_001
N
0.876
GSMUA_Achr4G33630_001
Musa acuminata
GSMUA_Achr4G33630_001
N
0.876
GSMUA_Achr5G26430_001
Musa acuminata
GSMUA_Achr5G26430_001
N
0.876
GSMUA_Achr9G12100_001
Musa acuminata
GSMUA_Achr9G12100_001
N
0.876
GSMUA_Achr9G24670_001
Musa acuminata
GSMUA_Achr9G24670_001
N
0.876
LPERR01G28830
Leersia perrieri
LPERR01G28830
N
0.876
MLOC_37666
Hordeum vulgare
MLOC_37666
N
0.876
MLOC_72940
Hordeum vulgare
MLOC_72940
N
0.876
MTR_2g011070
Medicago truncatula
MTR_2g011070
N
0.876
OB04G33270
Oryza brachyantha
OB04G33270
N
0.876
OB05G29420
Oryza brachyantha
OB05G29420
N
0.876
OB08G14900
Oryza brachyantha
OB08G14900
N
0.876
OBART01G33360
Oryza barthii
OBART01G33360
N
0.876
OBART04G24870
Oryza barthii
OBART04G24870
N
0.876
OBART05G21860
Oryza barthii
OBART05G21860
N
0.876
OGLUM01G37590
Oryza glumaepatula
OGLUM01G37590
N
0.876
OGLUM04G26290
Oryza glumaepatula
OGLUM04G26290
N
0.876
OGLUM05G23050
Oryza glumaepatula
OGLUM05G23050
N
0.876
OLONG_006510
Oryza longistaminata
OLONG_006510
N
0.876
OLONG_026655
Oryza longistaminata
OLONG_026655
N
0.876
OMERI01G30260
Oryza meridionalis
OMERI01G30260
N
0.876
OMERI04G21930
Oryza meridionalis
OMERI04G21930
N
0.876
OMERI12G12400
Oryza meridionalis
OMERI12G12400
N
0.876
ONIVA01G38120
Oryza nivara
ONIVA01G38120
N
0.876
ONIVA03G13290
Oryza nivara
ONIVA03G13290
N
0.876
ONIVA05G22530
Oryza nivara
ONIVA05G22530
N
0.876
OPUNC01G32440
Oryza punctata
OPUNC01G32440
N
0.876
OPUNC04G23980
Oryza punctata
OPUNC04G23980
N
0.876
ORGLA04G0213700
Oryza glaberrima
ORGLA04G0213700
N
0.876
ORGLA05G0190400
Oryza glaberrima
ORGLA05G0190400
N
0.876
ORUFI01G36520
Oryza rufipogon
ORUFI01G36520
N
0.876
ORUFI05G23130
Oryza rufipogon
ORUFI05G23130
N
0.876
ORUFI06G19010
Oryza rufipogon
ORUFI06G19010
N
0.876
OS04G0631600
Oryza sativa
OS04G0631600
N
0.876
PGSC0003DMG400013875
Solanum tuberosum
PGSC0003DMG400013875
N
0.876
POPTR_0004s02870
Populus trichocarpa
POPTR_0004s02870
N
0.876
POPTR_0005s12150
Populus trichocarpa
POPTR_0005s12150
N
0.876
POPTR_0007s13360
Populus trichocarpa
POPTR_0007s13360
N
0.876
POPTR_0011s03560
Populus trichocarpa
POPTR_0011s03560
N
0.876
PRUPE_ppa005924mg
Prunus persica
PRUPE_ppa005924mg
N
0.876
Sb03g036670
Sorghum bicolor
Sb03g036670
N
0.876
Sb07g004980
Sorghum bicolor
Sb07g004980
N
0.876
Sb09g024720
Sorghum bicolor
Sb09g024720
N
0.876
Si001796m.g
Setaria italica
Si001796m.g
N
0.876
Si010139m.g
Setaria italica
Si010139m.g
N
0.876
Si013853m.g
Setaria italica
Si013853m.g
N
0.876
Si022548m.g
Setaria italica
Si022548m.g
N
0.876
Solyc02g079760.2
Solanum lycopersicum
Solyc02g079760.2
N
0.876
Solyc03g031450.2
Solanum lycopersicum
Solyc03g031450.2
N
0.876
TCM_030051
Theobroma cacao
TCM_030051
N
0.876
Traes_2AL_70AE1B8B8
Triticum aestivum
Traes_2AL_70AE1B8B8
N
0.876
Traes_2BL_A014BCC51
Triticum aestivum
Traes_2BL_A014BCC51
N
0.876
Traes_2BL_E82F7902D
Triticum aestivum
Traes_2BL_E82F7902D
N
0.876
Traes_2DL_DCD7B13A8
Triticum aestivum
Traes_2DL_DCD7B13A8
N
0.876
TRIUR3_00968
Triticum urartu
TRIUR3_00968
N
0.876
VIT_00s0274g00070
Vitis vinifera
VIT_00s0274g00070
N
0.876
VIT_04s0023g02410
Vitis vinifera
VIT_04s0023g02410
N
0.876
Ca_00214
Cicer arietinum
Ca_00214
N
0.876
Pm009855
Prunus mume
Pm009855
N
0.876
29842.m003704
Ricinus communis
29842.m003704
N
0.876
cassava13240.valid.m1
Manihot esculenta
cassava13240.valid.m1
N
0.876
cassava19346.valid.m1
Manihot esculenta
cassava19346.valid.m1
N
0.876
Cucsa.125970
Cucumis sativus
Cucsa.125970
N
0.876
mgf008488m
Mimulus guttatus
mgf008488m
N
0.876
mgf016565m
Mimulus guttatus
mgf016565m
N
0.876
Aquca_028_00271
Aquilegia coerulea
Aquca_028_00271
N
0.876
Ciclev10015039m.g
Citrus clementina
Ciclev10015039m.g
N
0.876
Eucgr.E03614
Eucalyptus grandis
Eucgr.E03614
N
0.876
evm.TU.supercontig_27.162
Carica papaya
evm.TU.supercontig_27.162
N
0.876
gene30665-v1.0-hybrid
Fragaria vesca
gene30665-v1.0-hybrid
N
0.876
Gorai.006G085000
Gossypium raimondii
Gorai.006G085000
N
0.876
Gorai.009G175300
Gossypium raimondii
Gorai.009G175300
N
0.876
Gorai.010G147100
Gossypium raimondii
Gorai.010G147100
N
0.876
Gorai.011G020100
Gossypium raimondii
Gorai.011G020100
N
0.876
Lus10007613.g
Linum usitatissimum
Lus10007613.g
N
0.876
Lus10018400.g
Linum usitatissimum
Lus10018400.g
N
0.876
Lus10025987.g
Linum usitatissimum
Lus10025987.g
N
0.876
MDP0000301999
Malus domestica
MDP0000301999
N
0.876
orange1.1g011373m.g
Citrus sinensis
orange1.1g011373m.g
N
0.876
Pavir.Ea03112
Panicum virgatum
Pavir.Ea03112
N
0.876
Pavir.Eb03429
Panicum virgatum
Pavir.Eb03429
N
0.876
Pavir.Ga00384
Panicum virgatum
Pavir.Ga00384
N
0.876
Pavir.J10443
Panicum virgatum
Pavir.J10443
N
0.876
Pavir.J13928
Panicum virgatum
Pavir.J13928
N
0.876
Pavir.J25904
Panicum virgatum
Pavir.J25904
N
0.876
SapurV1A.0028s0510
Salix purpurea
SapurV1A.0028s0510
N
0.876
SapurV1A.0441s0120
Salix purpurea
SapurV1A.0441s0120
N
0.876
SapurV1A.1304s0050
Salix purpurea
SapurV1A.1304s0050
N
0.876
PK14284.1
Cannabis sativa
PK14284.1
N
0.876
LjSGA_014369.1
Lotus japonicus
LjSGA_014369.1
N
0.876
PDK_20s1457351g001
Phoenix dactylifera
PDK_20s1457351g001
N
0.876
BHLH123
Arabidopsis thaliana
AT3G20640
N
0.875
Bo01052s010
Brassica oleracea
Bo01052s010
N
0.875
Bo3g076150
Brassica oleracea
Bo3g076150
N
0.875
Bra001798
Brassica rapa
Bra001798
N
0.875
GLYMA06G40760
Glycine max
GLYMA06G40760
N
0.875
GLYMA12G17630
Glycine max
GLYMA12G17630
N
0.875
GLYMA12G34490
Glycine max
GLYMA12G34490
N
0.875
GLYMA13G36010
Glycine max
GLYMA13G36010
N
0.875
MTR_2g081820
Medicago truncatula
MTR_2g081820
N
0.875
MTR_8g466800
Medicago truncatula
MTR_8g466800
N
0.875
PGSC0003DMG400005064
Solanum tuberosum
PGSC0003DMG400005064
N
0.875
PGSC0003DMG400019236
Solanum tuberosum
PGSC0003DMG400019236
N
0.875
PGSC0003DMG400025020
Solanum tuberosum
PGSC0003DMG400025020
N
0.875
POPTR_0011s13320
Populus trichocarpa
POPTR_0011s13320
N
0.875
PRUPE_ppa023041mg
Prunus persica
PRUPE_ppa023041mg
N
0.875
Solyc07g063830.2
Solanum lycopersicum
Solyc07g063830.2
N
0.875
Solyc10g006640.2
Solanum lycopersicum
Solyc10g006640.2
N
0.875
TCM_031172
Theobroma cacao
TCM_031172
N
0.875
VIT_19s0014g04670
Vitis vinifera
VIT_19s0014g04670
N
0.875
Ca_06936
Cicer arietinum
Ca_06936
N
0.875
Ca_19891
Cicer arietinum
Ca_19891
N
0.875
Cla003883
Citrullus lanatus
Cla003883
N
0.875
Pm011692
Prunus mume
Pm011692
N
0.875
27733.m000033
Ricinus communis
27733.m000033
N
0.875
cassava28105.m1
Manihot esculenta
cassava28105.m1
N
0.875
cassava36956.valid.m1
Manihot esculenta
cassava36956.valid.m1
N
0.875
Cucsa.059580
Cucumis sativus
Cucsa.059580
N
0.875
mgf001258m
Mimulus guttatus
mgf001258m
N
0.875
Bostr.19424s0583
Boechera stricta
Bostr.19424s0583
N
0.875
Cagra.0316s0001
Capsella grandiflora
Cagra.0316s0001
N
0.875
Carubv10013632m.g
Capsella rubella
Carubv10013632m.g
N
0.875
Ciclev10008228m.g
Citrus clementina
Ciclev10008228m.g
N
0.875
Eucgr.F03384
Eucalyptus grandis
Eucgr.F03384
N
0.875
evm.TU.supercontig_12.1
Carica papaya
evm.TU.supercontig_12.1
N
0.875
gene03259-v1.0-hybrid
Fragaria vesca
gene03259-v1.0-hybrid
N
0.875
Gorai.002G079200
Gossypium raimondii
Gorai.002G079200
N
0.875
Gorai.009G429100
Gossypium raimondii
Gorai.009G429100
N
0.875
Lus10038550.g
Linum usitatissimum
Lus10038550.g
N
0.875
MDP0000295440
Malus domestica
MDP0000295440
N
0.875
MDP0000296508
Malus domestica
MDP0000296508
N
0.875
SapurV1A.0694s0030
Salix purpurea
SapurV1A.0694s0030
N
0.875
Thhalv10020666m.g
Eutrema salsugineum
Thhalv10020666m.g
N
0.875
PK22680.1
Cannabis sativa
PK22680.1
N
0.875
GLYMA16G24661
Glycine max
GLYMA16G24661
N
0.863
Bra035761
Brassica rapa
Bra035761
N
0.862
cassava21180.m1
Manihot esculenta
cassava21180.m1
N
0.856
BHLH110
Arabidopsis thaliana
AT1G27660
N
0.852
fgenesh2_kg.1__2924__AT1G27660.1
Arabidopsis lyrata
fgenesh2_kg.1__2924__AT1G27660.1
N
0.852
GSMUA_Achr6G24280_001
Musa acuminata
GSMUA_Achr6G24280_001
N
0.852
MLOC_57076
Hordeum vulgare
MLOC_57076
N
0.852
MTR_3g112170
Medicago truncatula
MTR_3g112170
N
0.852
OLONG_021979
Oryza longistaminata
OLONG_021979
N
0.852
OPUNC01G00360
Oryza punctata
OPUNC01G00360
N
0.852
PGSC0003DMG400003746
Solanum tuberosum
PGSC0003DMG400003746
N
0.852
POPTR_0002s03380
Populus trichocarpa
POPTR_0002s03380
N
0.852
POPTR_0005s25240
Populus trichocarpa
POPTR_0005s25240
N
0.852
PRUPE_ppa005486mg
Prunus persica
PRUPE_ppa005486mg
N
0.852
Sb03g008830
Sorghum bicolor
Sb03g008830
N
0.852
Solyc02g084880.2
Solanum lycopersicum
Solyc02g084880.2
N
0.852
Solyc04g080710.2
Solanum lycopersicum
Solyc04g080710.2
N
0.852
TCM_034098
Theobroma cacao
TCM_034098
N
0.852
VIT_18s0001g12970
Vitis vinifera
VIT_18s0001g12970
N
0.852
Ca_04928
Cicer arietinum
Ca_04928
N
0.852
Cla021101
Citrullus lanatus
Cla021101
N
0.852
Pm005865
Prunus mume
Pm005865
N
0.852
30170.m014085
Ricinus communis
30170.m014085
N
0.852
cassava42530.valid.m1
Manihot esculenta
cassava42530.valid.m1
N
0.852
Cucsa.342640
Cucumis sativus
Cucsa.342640
N
0.852
Cucsa.359290
Cucumis sativus
Cucsa.359290
N
0.852
mgf013138m
Mimulus guttatus
mgf013138m
N
0.852
Aquca_010_00556
Aquilegia coerulea
Aquca_010_00556
N
0.852
Ciclev10001291m.g
Citrus clementina
Ciclev10001291m.g
N
0.852
evm.TU.supercontig_99.32
Carica papaya
evm.TU.supercontig_99.32
N
0.852
gene11847-v1.0-hybrid
Fragaria vesca
gene11847-v1.0-hybrid
N
0.852
Gorai.009G199600
Gossypium raimondii
Gorai.009G199600
N
0.852
MDP0000168695
Malus domestica
MDP0000168695
N
0.852
MDP0000262020
Malus domestica
MDP0000262020
N
0.852
MDP0000687814
Malus domestica
MDP0000687814
N
0.852
orange1.1g035657m.g
Citrus sinensis
orange1.1g035657m.g
N
0.852
SapurV1A.0006s0290
Salix purpurea
SapurV1A.0006s0290
N
0.852
SapurV1A.0188s0290
Salix purpurea
SapurV1A.0188s0290
N
0.852
PDK_20s1709901g001
Phoenix dactylifera
PDK_20s1709901g001
N
0.852
SapurV1A.0658s0070
Salix purpurea
SapurV1A.0658s0070
N
0.851
SapurV1A.2213s0020
Salix purpurea
SapurV1A.2213s0020
N
0.851
LjSGA_021413.2
Lotus japonicus
LjSGA_021413.2
N
0.850
POPTR_0013s13050
Populus trichocarpa
POPTR_0013s13050
N
0.844
POPTR_0019s12530
Populus trichocarpa
POPTR_0019s12530
N
0.844
PRUPE_ppa012528mg
Prunus persica
PRUPE_ppa012528mg
N
0.844
TCM_019871
Theobroma cacao
TCM_019871
N
0.844
Pm007388
Prunus mume
Pm007388
N
0.844
28405.m000015
Ricinus communis
28405.m000015
N
0.844
cassava36740.valid.m1
Manihot esculenta
cassava36740.valid.m1
N
0.844
cassava37772.valid.m1
Manihot esculenta
cassava37772.valid.m1
N
0.844
cassava37773.valid.m1
Manihot esculenta
cassava37773.valid.m1
N
0.844
SapurV1A.0388s0180
Salix purpurea
SapurV1A.0388s0180
N
0.844
Al_scaffold_0006_3588
Arabidopsis lyrata
Al_scaffold_0006_3588
N
0.841
AT4G05170
Arabidopsis thaliana
AT4G05170
N
0.841
Bostr.2983s0058
Boechera stricta
Bostr.2983s0058
N
0.841
Cagra.1981s0012
Capsella grandiflora
Cagra.1981s0012
N
0.841
Carubv10003683m.g
Capsella rubella
Carubv10003683m.g
N
0.841
Thhalv10029319m.g
Eutrema salsugineum
Thhalv10029319m.g
N
0.841