CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10005335m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10005335m.g
T049345_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH104
M01706_2.00
Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC
PBM
Weirauch et al.(2014)
pTH7365
0.914
1.000
BHLH104
M06737_2.00
Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC
Dap-seq
OMalley et al.(2016)
bHLH104_col_b
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10005335m
bHLH
154
203
GTKACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLR
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
24 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH104
Arabidopsis thaliana
AT4G14410
D
0.914
Ca_23174
Cicer arietinum
Ca_23174
I
0.878
Thhalv10025927m.g
Eutrema salsugineum
Thhalv10025927m.g
I
0.914
orange1.1g028060m.g
Citrus sinensis
orange1.1g028060m.g
I
0.846
Lus10022186.g
Linum usitatissimum
Lus10022186.g
I
0.857
Gorai.011G172500
Gossypium raimondii
Gorai.011G172500
I
0.844
gene11436-v1.0-hybrid
Fragaria vesca
gene11436-v1.0-hybrid
I
0.856
evm.TU.supercontig_44.78
Carica papaya
evm.TU.supercontig_44.78
I
0.859
Ciclev10005872m.g
Citrus clementina
Ciclev10005872m.g
I
0.846
Cagra.1718s0002
Capsella grandiflora
Cagra.1718s0002
I
0.914
Bostr.0597s0053
Boechera stricta
Bostr.0597s0053
I
0.914
Cucsa.255290
Cucumis sativus
Cucsa.255290
I
0.857
Cla021854
Citrullus lanatus
Cla021854
I
0.857
Solyc10g006510.2
Solanum lycopersicum
Solyc10g006510.2
I
0.842
PRUPE_ppa011217mg
Prunus persica
PRUPE_ppa011217mg
I
0.846
MTR_1g043430
Medicago truncatula
MTR_1g043430
I
0.878
GLYMA20G22010
Glycine max
GLYMA20G22010
I
0.842
GLYMA10G01010
Glycine max
GLYMA10G01010
I
0.842
bHLH104
Arabidopsis lyrata
fgenesh2_kg.7__2895__AT4G14410.2
I
0.914
Bra041033
Brassica rapa
Bra041033
I
0.911
Bra014923
Brassica rapa
Bra014923
I
0.856
Bo7g040830
Brassica oleracea
Bo7g040830
I
0.856
Bo4g126940
Brassica oleracea
Bo4g126940
I
0.891
Bo1g102270
Brassica oleracea
Bo1g102270
I
0.856