Carubv10007459m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10007459m.g T049359_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.838 0.500
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007459m bHLH 261 310

Links

Other bHLH family TFs
Other Capsella rubella TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1225s0008 Capsella grandiflora Cagra.1225s0008 I 0.914
Bostr.7867s0726 Boechera stricta Bostr.7867s0726 N 0.899
Bo1g017080 Brassica oleracea Bo1g017080 N 0.898
Bo1g017090 Brassica oleracea Bo1g017090 N 0.898
Bo1g017100 Brassica oleracea Bo1g017100 N 0.886
Eucgr.H02385 Eucalyptus grandis Eucgr.H02385 I 0.859
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.858
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.856
F775_11371 Aegilops tauschii F775_11371 I 0.856
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.856
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.856
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.856
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.856
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.856
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.856
Pm002304 Prunus mume Pm002304 I 0.856
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.856
Thhalv10027582m.g Eutrema salsugineum Thhalv10027582m.g I 0.853
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.853
Gorai.007G151900 Gossypium raimondii Gorai.007G151900 I 0.852
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.848
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.848
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.848
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.848
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.848
OBART06G06000 Oryza barthii OBART06G06000 I 0.848
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.848
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.848
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.848
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.848
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.848
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.848
OS06G0193400 Oryza sativa OS06G0193400 I 0.848
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.848
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.848
TCM_037455 Theobroma cacao TCM_037455 I 0.848
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.848
29739.m003684 Ricinus communis 29739.m003684 I 0.848
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.848
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.848
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.848
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.848
Gorai.001G017900 Gossypium raimondii Gorai.001G017900 I 0.848
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.848
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.848
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.848
PK08539.1 Cannabis sativa PK08539.1 I 0.848
Cagra.1225s0009 Capsella grandiflora Cagra.1225s0009 I 0.847
Carubv10007002m.g Capsella rubella Carubv10007002m.g I 0.847
MLOC_65463 Hordeum vulgare MLOC_65463 I 0.842
AT4G28800 Arabidopsis thaliana AT4G28800 N 0.841
Eucgr.H02386 Eucalyptus grandis Eucgr.H02386 I 0.839
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.838
Bo4g150960 Brassica oleracea Bo4g150960 I 0.838
Bra030210 Brassica rapa Bra030210 I 0.838
Bra039924 Brassica rapa Bra039924 I 0.838
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.838
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.838
TCM_000894 Theobroma cacao TCM_000894 I 0.838
Cla014287 Citrullus lanatus Cla014287 I 0.838
Cucsa.103620 Cucumis sativus Cucsa.103620 I 0.838
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.838
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.838
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.838
MDP0000159571 Malus domestica MDP0000159571 I 0.838
MDP0000170202 Malus domestica MDP0000170202 I 0.838
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.838
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.838