CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Carubv10010050m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10010050m.g
T049373_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.914
0.980
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.914
0.980
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.873
0.863
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10010050m
bHLH
189
239
ATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKTLQ
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
168 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29216.m000261
Ricinus communis
29216.m000261
I
0.861
30074.m001421
Ricinus communis
30074.m001421
I
0.858
30149.m000231
Ricinus communis
30149.m000231
I
0.848
30152.m002405
Ricinus communis
30152.m002405
I
0.858
AMTR_s00070p00149100
Amborella trichopoda
AMTR_s00070p00149100
I
0.903
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.861
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.865
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.914
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.845
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.914
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.845
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.873
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.873
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.845
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.845
Bo5g085170
Brassica oleracea
Bo5g085170
I
0.879
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.914
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.914
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.914
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.914
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.845
Bra000291
Brassica rapa
Bra000291
I
0.845
Bra004748
Brassica rapa
Bra004748
I
0.845
Bra028088
Brassica rapa
Bra028088
I
0.914
Bra034421
Brassica rapa
Bra034421
I
0.879
Bra036760
Brassica rapa
Bra036760
I
0.914
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.873
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.914
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.845
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.914
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.914
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.845
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.914
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.861
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.858
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.861
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.848
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.861
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.861
Ca_26916
Cicer arietinum
Ca_26916
I
0.840
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.845
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.914
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.861
Cla017792
Citrullus lanatus
Cla017792
I
0.861
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.914
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.861
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.861
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.861
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.848
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.858
F775_24151
Aegilops tauschii
F775_24151
I
0.873
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.845
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.914
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.861
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.861
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.914
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.914
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.861
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.845
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.861
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.858
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.861
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.845
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.914
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.845
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.861
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.849
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.869
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.845
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.861
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.861
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.861
MDP0000180376
Malus domestica
MDP0000180376
I
0.861
MDP0000269890
Malus domestica
MDP0000269890
I
0.914
MDP0000273574
Malus domestica
MDP0000273574
I
0.845
mgf002701m
Mimulus guttatus
mgf002701m
I
0.914
mgf005043m
Mimulus guttatus
mgf005043m
I
0.845
mgf016734m
Mimulus guttatus
mgf016734m
I
0.861
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.873
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.848
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.848
MTR_4g033295
Medicago truncatula
MTR_4g033295
I
0.888
OB02G30670
Oryza brachyantha
OB02G30670
I
0.845
OB08G26810
Oryza brachyantha
OB08G26810
I
0.873
OBART02G23210
Oryza barthii
OBART02G23210
I
0.845
OBART08G19860
Oryza barthii
OBART08G19860
I
0.873
OBART09G14660
Oryza barthii
OBART09G14660
I
0.873
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.873
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.873
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.845
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.873
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.845
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.873
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.873
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.845
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.873
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.873
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.845
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.873
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.873
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.861
orange1.1g023215m.g
Citrus sinensis
orange1.1g023215m.g
I
0.914
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.845
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.873
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.873
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.845
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.873
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.873
OS08G0506700
Oryza sativa
OS08G0506700
D
0.873
OS09G0487900
Oryza sativa
OS09G0487900
I
0.873
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.845
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.845
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.845
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.845
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.861
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.858
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.858
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.845
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.861
PGSC0003DMG400022058
Solanum tuberosum
PGSC0003DMG400022058
I
0.857
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.858
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.914
PK06301.1
Cannabis sativa
PK06301.1
I
0.914
PK07850.1
Cannabis sativa
PK07850.1
I
0.845
PK18038.1
Cannabis sativa
PK18038.1
I
0.861
Pm000447
Prunus mume
Pm000447
I
0.861
Pm004181
Prunus mume
Pm004181
I
0.914
Pm007619
Prunus mume
Pm007619
I
0.845
Pm025821
Prunus mume
Pm025821
I
0.861
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.861
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.858
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.861
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.861
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.914
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.861
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.845
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.861
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.845
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.846
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.861
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.914
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.845
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.845
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.914
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.914
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.846
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.845
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.845
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.914
Si010513m.g
Setaria italica
Si010513m.g
I
0.845
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.858
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.914
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.845
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.861
Solyc11g056650.1
Solanum lycopersicum
Solyc11g056650.1
I
0.857
TCM_005925
Theobroma cacao
TCM_005925
I
0.858
TCM_020066
Theobroma cacao
TCM_020066
I
0.845
TCM_024842
Theobroma cacao
TCM_024842
I
0.861
TCM_036484
Theobroma cacao
TCM_036484
I
0.914
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.845
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.914
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.873
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.873
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.873
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.845
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.861
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.858
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.914