CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10019965m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10019965m.g
T049411_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10019965m
bHLH
432
480
TGNHALCEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQELQ
Carubv10020221m
bHLH
282
330
TGNHALCEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQELQ
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL011188
Aedes aegypti
AAEL011188
N
AAEL014129
Aedes aegypti
AAEL014129
N
AAEL015073
Aedes aegypti
AAEL015073
N
AALB000412
Anopheles albimanus
AALB000412
N
AALB000419
Anopheles albimanus
AALB000419
N
AALB004779
Anopheles albimanus
AALB004779
N
AALB008495
Anopheles albimanus
AALB008495
I
AARA000518
Anopheles arabiensis
AARA000518
I
AARA011011
Anopheles arabiensis
AARA011011
N
AARA011018
Anopheles arabiensis
AARA011018
N
AATE006365
Anopheles atroparvus
AATE006365
N
AATE013760
Anopheles atroparvus
AATE013760
I
AATE017887
Anopheles atroparvus
AATE017887
N
ACEP16055
Atta cephalotes
ACEP16055
N
ACEP16057
Atta cephalotes
ACEP16057
N
ACEP16104
Atta cephalotes
ACEP16104
N
ACEP18439
Atta cephalotes
ACEP18439
N
ACEP18779
Atta cephalotes
ACEP18779
N
ACEP25260
Atta cephalotes
ACEP25260
N
ACHR005872
Anopheles christyi
ACHR005872
N
ACHR009192
Anopheles christyi
ACHR009192
I
ACOM023902
Anopheles coluzzii
ACOM023902
N
ACOM023939
Anopheles coluzzii
ACOM023939
N
ACOM024986
Anopheles coluzzii
ACOM024986
N
ACUA016860
Anopheles culicifacies
ACUA016860
N
ACUA020382
Anopheles culicifacies
ACUA020382
I
ACUA023844
Anopheles culicifacies
ACUA023844
N
ADAC010175
Anopheles darlingi
ADAC010175
N
ADAC010219
Anopheles darlingi
ADAC010219
N
ADIR000205
Anopheles dirus
ADIR000205
I
ADIR010886
Anopheles dirus
ADIR010886
N
ADIR010894
Anopheles dirus
ADIR010894
N
AEPI001839
Anopheles epiroticus
AEPI001839
N
AEPI004513
Anopheles epiroticus
AEPI004513
I
AFAF006342
Anopheles farauti
AFAF006342
I
AFAF009935
Anopheles farauti
AFAF009935
N
AFAF009954
Anopheles farauti
AFAF009954
N
AFAF014429
Anopheles farauti
AFAF014429
N
AFAF020534
Anopheles farauti
AFAF020534
N
AFUN001006
Anopheles funestus
AFUN001006
I
AFUN010565
Anopheles funestus
AFUN010565
N
AFUN010572
Anopheles funestus
AFUN010572
N
AMAM002835
Anopheles maculatus
AMAM002835
I
AMAM007431
Anopheles maculatus
AMAM007431
N
AMAM018266
Anopheles maculatus
AMAM018266
N
AMEC006545
Anopheles melas
AMEC006545
N
AMEC008441
Anopheles melas
AMEC008441
N
AMEC017817
Anopheles melas
AMEC017817
I
AMEM000859
Anopheles merus
AMEM000859
N
AMEM004241
Anopheles merus
AMEM004241
N
AMEM014259
Anopheles merus
AMEM014259
N
AMIN000989
Anopheles minimus
AMIN000989
N
AMIN000996
Anopheles minimus
AMIN000996
N
AMIN008751
Anopheles minimus
AMIN008751
I
ANCCAN_17995
Ancylostoma caninum
ANCCAN_17995
N
ANCDUO_08930
Ancylostoma duodenale
ANCDUO_08930
N
AQUA000252
Anopheles quadriannulatus
AQUA000252
N
AQUA000259
Anopheles quadriannulatus
AQUA000259
N
AQUA010988
Anopheles quadriannulatus
AQUA010988
N
ASIM_0000332801
Anisakis simplex
ASIM_0000332801
N
ASIM_0000883501
Anisakis simplex
ASIM_0000883501
N
ASIM_0001369201
Anisakis simplex
ASIM_0001369201
N
ASIS004860
Anopheles sinensis
ASIS004860
N
ASIS022129
Anopheles sinensis
ASIS022129
N
ASIS023746
Anopheles sinensis
ASIS023746
N
ASTEI05182
Anopheles stephensi
ASTEI05182
N
ASTEI08593
Anopheles stephensi
ASTEI08593
I
augustus_masked-nMf.1.1.scaf00847-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf00847-processed-gene-0.0
N
A_01376
Schistosoma haematobium
A_01376
N
A_07251
Schistosoma haematobium
A_07251
N
BAG86626
Xenopus laevis
BAG86626
N
BGIBMGA002993
Bombyx mori
BGIBMGA002993
N
BGIBMGA003172
Bombyx mori
BGIBMGA003172
N
BGIBMGA012896
Bombyx mori
BGIBMGA012896
N
BGLB008488
Biomphalaria glabrata
BGLB008488
N
BGLB013266
Biomphalaria glabrata
BGLB013266
N
BTMF_0000314701
Brugia timori
BTMF_0000314701
N
BTMF_0001014001
Brugia timori
BTMF_0001014001
N
BXY_1202100
Bursaphelenchus xylophilus
BXY_1202100
N
CAA04813
Xenopus laevis
CAA04813
N
CapteG199350
Capitella teleta
CapteG199350
N
Cflo_07687--XP_001122560.1_APIME
Camponotus floridanus
Cflo_07687--XP_001122560.1_APIME
N
CGI_10019141
Crassostrea gigas
CGI_10019141
N
CGI_10019474
Crassostrea gigas
CGI_10019474
N
CGOC_0001405301
Cylicostephanus goldi
CGOC_0001405301
N
CLEC007093
Cimex lectularius
CLEC007093
N
CLEC007100
Cimex lectularius
CLEC007100
N
CPIJ000431
Culex quinquefasciatus
CPIJ000431
N
CPIJ000719
Culex quinquefasciatus
CPIJ000719
I
CPIJ007737
Culex quinquefasciatus
CPIJ007737
N
CpipJ_CPIJ000431
Culex pipiens
CpipJ_CPIJ000431
N
CpipJ_CPIJ000719
Culex pipiens
CpipJ_CPIJ000719
I
CpipJ_CPIJ007737
Culex pipiens
CpipJ_CPIJ007737
N
D915_02168
Fasciola hepatica
D915_02168
N
D915_09884
Fasciola hepatica
D915_09884
N
D918_04294
Trichuris suis
D918_04294
N
DICVIV_06159
Dictyocaulus viviparus
DICVIV_06159
N
DME_0000913401
Dracunculus medinensis
DME_0000913401
N
ECPE_0001424601
Echinostoma caproni
ECPE_0001424601
N
EEL_0000193501
Elaeophora elaphi
EEL_0000193501
N
EEL_0000897101
Elaeophora elaphi
EEL_0000897101
N
Tbx15
Dipodomys ordii
ENSDORG00000005620
N
ENSECAG00000002502
Equus caballus
ENSECAG00000002502
I
ENSETEG00000015428
Echinops telfairi
ENSETEG00000015428
I
TBX2
Homo sapiens
ENSG00000121068
D
TBX22
Homo sapiens
ENSG00000122145
D
ENSGACG00000000841
Gasterosteus aculeatus
ENSGACG00000000841
N
TBX18
Gorilla gorilla
ENSGGOG00000027982
I
ENSGMOG00000002691
Gadus morhua
ENSGMOG00000002691
N
ENSGMOG00000010368
Gadus morhua
ENSGMOG00000010368
N
ENSMEUG00000014480
Macropus eugenii
ENSMEUG00000014480
I
Tbx5
Mus musculus
ENSMUSG00000018263
D
Tbx15
Mus musculus
ENSMUSG00000027868
I
ENSOANG00000002255
Ornithorhynchus anatinus
ENSOANG00000002255
N
ENSOANG00000031362
Ornithorhynchus anatinus
ENSOANG00000031362
I
ENSPMAG00000004017
Petromyzon marinus
ENSPMAG00000004017
N
ENSPMAG00000006729
Petromyzon marinus
ENSPMAG00000006729
N
ENSPMAG00000008021
Petromyzon marinus
ENSPMAG00000008021
N
ENSSSCG00000006723
Sus scrofa
ENSSSCG00000006723
I
TBX22
Sus scrofa
ENSSSCG00000012449
I
ENSTGUG00000013354
Taeniopygia guttata
ENSTGUG00000013354
I
EVEC_0000199201
Enterobius vermicularis
EVEC_0000199201
N
GF19459
Drosophila ananassae
FBgn0096468
N
Gfo_R000255
Geospiza fortis
Gfo_R000255
I
GPUH_0000709501
Gongylonema pulchrum
GPUH_0000709501
N
GPUH_0002107201
Gongylonema pulchrum
GPUH_0002107201
N
Hba_09878
Heterorhabditis bacteriophora
Hba_09878
N
HelroG183031
Helobdella robusta
HelroG183031
N
HHAL002271-PA
Halyomorpha halys
HHAL002271-PA
I
HHAL004081-PA
Halyomorpha halys
HHAL004081-PA
N
HMEL012428
Heliconius melpomene
HMEL012428
N
HPLM_0000022701
Haemonchus placei
HPLM_0000022701
N
Hsal_04124--XP_001122560.1_APIME
Harpegnathos saltator
Hsal_04124--XP_001122560.1_APIME
I
Hsal_09266--XP_394607.3_APIME
Harpegnathos saltator
Hsal_09266--XP_394607.3_APIME
N
ISCW003118
Ixodes scapularis
ISCW003118
N
ISCW019279
Ixodes scapularis
ISCW019279
N
ISCW019282
Ixodes scapularis
ISCW019282
N
ISCW019286
Ixodes scapularis
ISCW019286
N
KGM_02027
Danaus plexippus
KGM_02027
N
KGM_02039
Danaus plexippus
KGM_02039
N
KGM_02695
Danaus plexippus
KGM_02695
N
KGM_15498
Danaus plexippus
KGM_15498
N
L798_05217
Zootermopsis nevadensis
L798_05217
N
LCUP000435
Lucilia cuprina
LCUP000435
N
LCUP008638
Lucilia cuprina
LCUP008638
I
LDEC003104
Leptinotarsa decemlineata
LDEC003104
N
LDEC010815
Leptinotarsa decemlineata
LDEC010815
N
LDEC017550
Leptinotarsa decemlineata
LDEC017550
N
LLOJ003747
Lutzomyia longipalpis
LLOJ003747
N
LOAG_04396
Loa loa
LOAG_04396
N
LOAG_12591
Loa loa
LOAG_12591
N
LOAG_12746
Loa loa
LOAG_12746
N
LotgiG176571
Lottia gigantea
LotgiG176571
N
maker-nMf.1.1.scaf12105-augustus-gene-0.3
Meloidogyne floridensis
maker-nMf.1.1.scaf12105-augustus-gene-0.3
N
MDOA013116
Musca domestica
MDOA013116
N
MESCA003495
Megaselia scalaris
MESCA003495
N
MhA1_Contig117.frz3.gene29
Meloidogyne hapla
MhA1_Contig117.frz3.gene29
N
nAv.1.0.1.g04274
Acanthocheilonema viteae
nAv.1.0.1.g04274
N
NBR_0000902501
Nippostrongylus brasiliensis
NBR_0000902501
N
nDi.2.2.2.g06107
Dirofilaria immitis
nDi.2.2.2.g06107
N
nDi.2.2.2.g08934
Dirofilaria immitis
nDi.2.2.2.g08934
N
NECAME_12883
Necator americanus
NECAME_12883
N
nLs.2.1.2.g03772
Litomosoides sigmodontis
nLs.2.1.2.g03772
N
nLs.2.1.2.g07026
Litomosoides sigmodontis
nLs.2.1.2.g07026
N
nOo.2.0.1.g05406
Onchocerca ochengi
nOo.2.0.1.g05406
N
nOo.2.0.1.g09130
Onchocerca ochengi
nOo.2.0.1.g09130
N
nRc.2.0.1.g29422
Romanomermis culicivorax
nRc.2.0.1.g29422
N
Ocbimv22015178m.g
Octopus bimaculoides
Ocbimv22015178m.g
N
Ocbimv22018978m.g
Octopus bimaculoides
Ocbimv22018978m.g
N
OFLC_0000606701
Onchocerca flexuosa
OFLC_0000606701
N
OFLC_0000825301
Onchocerca flexuosa
OFLC_0000825301
N
OFLC_0001538801
Onchocerca flexuosa
OFLC_0001538801
N
Ogr02070
Ophisaurus gracilis
Ogr02070
N
Ogr11254
Ophisaurus gracilis
Ogr11254
N
PEQ_0001376901
Parascaris equorum
PEQ_0001376901
N
PHUM147980
Pediculus humanus
PHUM147980
N
PHUM322720
Pediculus humanus
PHUM322720
N
PPAI011117
Phlebotomus papatasi
PPAI011117
N
PXEA_0001641201
Protopolystoma xenopodis
PXEA_0001641201
N
PXEA_0002678801
Protopolystoma xenopodis
PXEA_0002678801
N
PXEA_0002881901
Protopolystoma xenopodis
PXEA_0002881901
N
RPRC001515
Rhodnius prolixus
RPRC001515
N
RPRC001599
Rhodnius prolixus
RPRC001599
N
RPRC009191
Rhodnius prolixus
RPRC009191
N
SCUD_0000486401
Schistosoma curassoni
SCUD_0000486401
N
SINV11021
Solenopsis invicta
SINV11021
N
SINV17820
Solenopsis invicta
SINV17820
I
Sjc_0021800
Schistosoma japonicum
Sjc_0021800
N
Sjc_0063960
Schistosoma japonicum
Sjc_0063960
N
SMTD_0000201501
Schistosoma mattheei
SMTD_0000201501
N
SMTD_0000982301
Schistosoma mattheei
SMTD_0000982301
N
SMUV_0000328201
Syphacia muris
SMUV_0000328201
N
SNAPOd2T00004191001
Oikopleura dioica
SNAPOd2T00004191001
N
SNAPOd2T00025690001
Oikopleura dioica
SNAPOd2T00025690001
N
SPER_0000012201
Spirometra erinaceieuropaei
SPER_0000012201
N
SPER_0000102601
Spirometra erinaceieuropaei
SPER_0000102601
N
SPU_017169
Strongylocentrotus purpuratus
SPU_017169
N
SPU_018391
Strongylocentrotus purpuratus
SPU_018391
N
SROB_0000887301
Schistosoma rodhaini
SROB_0000887301
N
SSLN_0001304401
Schistocephalus solidus
SSLN_0001304401
N
SSLN_0001366501
Schistocephalus solidus
SSLN_0001366501
N
SVE_1699100
Strongyloides venezuelensis
SVE_1699100
N
SVUK_0001816001
Strongylus vulgaris
SVUK_0001816001
N
TASK_0000235801
Taenia asiatica
TASK_0000235801
N
TC013511
Tribolium castaneum
TC013511
N
TCLT_0000604501
Thelazia callipaeda
TCLT_0000604501
N
TCLT_0000808201
Thelazia callipaeda
TCLT_0000808201
N
TCNE_0000688201
Toxocara canis
TCNE_0000688201
N
TELCIR_17831
Teladorsagia circumcincta
TELCIR_17831
N
TRE_0000996201
Trichobilharzia regenti
TRE_0000996201
N
TsM_001062800
Taenia solium
TsM_001062800
N
TTAC_0000422401
Hydatigera taeniaeformis
TTAC_0000422401
N
TTAC_0001051901
Hydatigera taeniaeformis
TTAC_0001051901
N
WUBG_02590
Wuchereria bancrofti
WUBG_02590
N
WUBG_08214
Wuchereria bancrofti
WUBG_08214
N
WUBG_09879
Wuchereria bancrofti
WUBG_09879
N
YQE_06267
Dendroctonus ponderosae
YQE_06267
N
YQE_06271
Dendroctonus ponderosae
YQE_06271
N