CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10019965m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10019965m.g
T049411_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10019965m
bHLH
432
480
TGNHALCEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQELQ
Carubv10020221m
bHLH
282
330
TGNHALCEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQELQ
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
46 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GL3
Arabidopsis lyrata
fgenesh2_kg.7__3280__AT5G41315.1
I
0.890
TT8
Arabidopsis lyrata
fgenesh2_kg.6__2968__AT4G09820.1
I
0.842
EGL3
Arabidopsis lyrata
fgenesh2_kg.2__120__AT1G63650.2
N
0.914
BHLH19
Arabidopsis thaliana
AT2G22760
N
0.839
BHLH2
Arabidopsis thaliana
AT1G63650
N
0.914
TT8
Arabidopsis thaliana
AT4G09820
I
0.842
AT4G28800
Arabidopsis thaliana
AT4G28800
N
0.843
GL3
Arabidopsis thaliana
AT5G41315
I
0.890
Bostr.19427s0043
Boechera stricta
Bostr.19427s0043
N
0.839
Bostr.25463s0338
Boechera stricta
Bostr.25463s0338
I
0.842
Bostr.29223s0199
Boechera stricta
Bostr.29223s0199
N
0.914
Bostr.7200s0145
Boechera stricta
Bostr.7200s0145
I
0.890
Bo4g141990
Brassica oleracea
Bo4g141990
I
0.877
Bo9g086920
Brassica oleracea
Bo9g086920
N
0.845
Bo9g086910
Brassica oleracea
Bo9g086910
N
0.845
Bo9g029230
Brassica oleracea
Bo9g029230
N
0.894
Bra037887
Brassica rapa
Bra037887
N
0.845
Bra027796
Brassica rapa
Bra027796
N
0.894
Bra027653
Brassica rapa
Bra027653
N
0.894
Bra025508
Brassica rapa
Bra025508
I
0.877
Cagra.1664s0001
Capsella grandiflora
Cagra.1664s0001
I
0.842
Cagra.0747s0001
Capsella grandiflora
Cagra.0747s0001
N
0.839
Cagra.2104s0007
Capsella grandiflora
Cagra.2104s0007
N
0.914
Carubv10024768m.g
Capsella rubella
Carubv10024768m.g
N
0.839
Carubv10004345m.g
Capsella rubella
Carubv10004345m.g
I
0.890
Carubv10002462m.g
Capsella rubella
Carubv10002462m.g
I
0.842
Ca_05750
Cicer arietinum
Ca_05750
I
0.851
Thhalv10023356m.g
Eutrema salsugineum
Thhalv10023356m.g
N
0.894
Thhalv10027709m.g
Eutrema salsugineum
Thhalv10027709m.g
I
0.890
gene32494-v1.0-hybrid
Fragaria vesca
gene32494-v1.0-hybrid
I
0.875
GLYMA08G01810
Glycine max
GLYMA08G01810
I
0.851
LjSGA_008146.1
Lotus japonicus
LjSGA_008146.1
I
0.851
cassava8594.m1
Manihot esculenta
cassava8594.m1
I
0.854
MTR_8g098275
Medicago truncatula
MTR_8g098275
I
0.851
mgf005803m
Mimulus guttatus
mgf005803m
I
0.853
PDK_20s1464821g001
Phoenix dactylifera
PDK_20s1464821g001
I
0.838
e_gw1.31.270.1
Physcomitrella patens
e_gw1.31.270.1
N
0.849
POPTR_0003s12810
Populus trichocarpa
POPTR_0003s12810
I
0.855
Pm023805
Prunus mume
Pm023805
I
0.875
PRUPE_ppa002762mg
Prunus persica
PRUPE_ppa002762mg
I
0.875
SELMODRAFT_87033
Selaginella moellendorffii
SELMODRAFT_87033
N
0.849
SELMODRAFT_73360
Selaginella moellendorffii
SELMODRAFT_73360
N
0.849
Sb06g016380
Sorghum bicolor
Sb06g016380
N
0.875
TCM_016261
Theobroma cacao
TCM_016261
I
0.862
VIT_02s0025g03450
Vitis vinifera
VIT_02s0025g03450
N
0.849