CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10020515m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10020515m.g
T049414_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07858.1
M01123_2.00
Cannabis sativa
HCACGTGB
VCACGTGD
PBM
Lambert et al.(2019)
pTH11370
0.884
0.960
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.853
0.500
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.853
0.500
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10020515m
bHLH
169
218
ASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELK
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
263 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BHLH30
Arabidopsis thaliana
AT1G68810
I
0.914
Bo6g108270
Brassica oleracea
Bo6g108270
I
0.914
Bra004015
Brassica rapa
Bra004015
I
0.914
Bra004338
Brassica rapa
Bra004338
I
0.914
fgenesh2_kg.2__1138__AT1G68810.1
Arabidopsis lyrata
fgenesh2_kg.2__1138__AT1G68810.1
I
0.914
GLYMA01G22530
Glycine max
GLYMA01G22530
I
0.914
GLYMA02G11190
Glycine max
GLYMA02G11190
I
0.914
PGSC0003DMG400000824
Solanum tuberosum
PGSC0003DMG400000824
I
0.914
Solyc04g006990.2
Solanum lycopersicum
Solyc04g006990.2
I
0.914
Solyc05g009880.2
Solanum lycopersicum
Solyc05g009880.2
I
0.914
Ca_24775
Cicer arietinum
Ca_24775
I
0.914
Cla000223
Citrullus lanatus
Cla000223
I
0.914
Bostr.26959s0001
Boechera stricta
Bostr.26959s0001
I
0.914
Cagra.1157s0003
Capsella grandiflora
Cagra.1157s0003
I
0.914
Thhalv10018758m.g
Eutrema salsugineum
Thhalv10018758m.g
I
0.914
chr2.CM0749.390.nc
Lotus japonicus
chr2.CM0749.390.nc
I
0.914
AMTR_s00010p00144270
Amborella trichopoda
AMTR_s00010p00144270
I
0.894
BHLH32
Arabidopsis thaliana
AT3G25710
I
0.894
Bo2g138630
Brassica oleracea
Bo2g138630
I
0.894
Bo7g081980
Brassica oleracea
Bo7g081980
I
0.894
Bra025158
Brassica rapa
Bra025158
I
0.894
Bra026510
Brassica rapa
Bra026510
I
0.894
BRADI1G67500
Brachypodium distachyon
BRADI1G67500
I
0.894
F775_10096
Aegilops tauschii
F775_10096
I
0.894
BHLH32
Arabidopsis lyrata
fgenesh2_kg.5__324__AT3G25710.1
I
0.894
GRMZM2G043854
Zea mays
GRMZM2G043854
I
0.894
GSMUA_Achr6G30610_001
Musa acuminata
GSMUA_Achr6G30610_001
I
0.894
GSMUA_Achr7G07280_001
Musa acuminata
GSMUA_Achr7G07280_001
I
0.894
LPERR03G10060
Leersia perrieri
LPERR03G10060
I
0.894
MLOC_66385
Hordeum vulgare
MLOC_66385
I
0.894
OB03G21490
Oryza brachyantha
OB03G21490
I
0.894
OBART03G11320
Oryza barthii
OBART03G11320
I
0.894
OGLUM03G11280
Oryza glumaepatula
OGLUM03G11280
I
0.894
OLONG_004075
Oryza longistaminata
OLONG_004075
I
0.894
ONIVA03G12280
Oryza nivara
ONIVA03G12280
I
0.894
ORGLA03G0109100
Oryza glaberrima
ORGLA03G0109100
I
0.894
ORUFI03G11650
Oryza rufipogon
ORUFI03G11650
I
0.894
OS03G0260600
Oryza sativa
OS03G0260600
I
0.894
Sb01g040450
Sorghum bicolor
Sb01g040450
I
0.894
SELMODRAFT_412681
Selaginella moellendorffii
SELMODRAFT_412681
I
0.894
SELMODRAFT_417246
Selaginella moellendorffii
SELMODRAFT_417246
I
0.894
Si039730m.g
Setaria italica
Si039730m.g
I
0.894
Traes_4AS_DD16F89E7
Triticum aestivum
Traes_4AS_DD16F89E7
I
0.894
Traes_4BL_A2B32FCEE
Triticum aestivum
Traes_4BL_A2B32FCEE
I
0.894
Traes_4DL_7BD3165FB
Triticum aestivum
Traes_4DL_7BD3165FB
I
0.894
TRIUR3_31897
Triticum urartu
TRIUR3_31897
I
0.894
Bostr.0556s0241
Boechera stricta
Bostr.0556s0241
I
0.894
Cagra.0417s0002
Capsella grandiflora
Cagra.0417s0002
I
0.894
Carubv10017470m.g
Capsella rubella
Carubv10017470m.g
I
0.894
Pavir.Ib01099
Panicum virgatum
Pavir.Ib01099
I
0.894
Thhalv10004524m.g
Eutrema salsugineum
Thhalv10004524m.g
I
0.894
Bo6g095860
Brassica oleracea
Bo6g095860
I
0.890
GLYMA10G34910
Glycine max
GLYMA10G34910
I
0.884
GLYMA20G32660
Glycine max
GLYMA20G32660
I
0.884
MTR_1g093750
Medicago truncatula
MTR_1g093750
I
0.884
PGSC0003DMG400007457
Solanum tuberosum
PGSC0003DMG400007457
I
0.884
POPTR_0008s11490
Populus trichocarpa
POPTR_0008s11490
I
0.884
POPTR_0010s14010
Populus trichocarpa
POPTR_0010s14010
I
0.884
PRUPE_ppa019406mg
Prunus persica
PRUPE_ppa019406mg
I
0.884
SELMODRAFT_46532
Selaginella moellendorffii
SELMODRAFT_46532
I
0.884
SELMODRAFT_56610
Selaginella moellendorffii
SELMODRAFT_56610
I
0.884
TCM_011873
Theobroma cacao
TCM_011873
I
0.884
VIT_01s0011g02940
Vitis vinifera
VIT_01s0011g02940
I
0.884
Ca_08440
Cicer arietinum
Ca_08440
I
0.884
Cla020671
Citrullus lanatus
Cla020671
I
0.884
Pm029004
Prunus mume
Pm029004
I
0.884
29738.m001043
Ricinus communis
29738.m001043
I
0.884
cassava16550.m1
Manihot esculenta
cassava16550.m1
I
0.884
cassava46299.m1
Manihot esculenta
cassava46299.m1
I
0.884
Cucsa.283920
Cucumis sativus
Cucsa.283920
I
0.884
mgf017635m
Mimulus guttatus
mgf017635m
I
0.884
Aquca_002_01095
Aquilegia coerulea
Aquca_002_01095
I
0.884
Ciclev10031900m.g
Citrus clementina
Ciclev10031900m.g
I
0.884
Eucgr.G02351
Eucalyptus grandis
Eucgr.G02351
I
0.884
evm.TU.supercontig_53.118
Carica papaya
evm.TU.supercontig_53.118
I
0.884
Gorai.008G186700
Gossypium raimondii
Gorai.008G186700
I
0.884
Gorai.013G079600
Gossypium raimondii
Gorai.013G079600
I
0.884
Lus10021711.g
Linum usitatissimum
Lus10021711.g
I
0.884
Lus10035056.g
Linum usitatissimum
Lus10035056.g
I
0.884
MDP0000271420
Malus domestica
MDP0000271420
I
0.884
MDP0000319726
Malus domestica
MDP0000319726
I
0.884
orange1.1g037785m.g
Citrus sinensis
orange1.1g037785m.g
I
0.884
SapurV1A.0079s0530
Salix purpurea
SapurV1A.0079s0530
I
0.884
SapurV1A.0304s0070
Salix purpurea
SapurV1A.0304s0070
I
0.884
SapurV1A.3056s0010
Salix purpurea
SapurV1A.3056s0010
I
0.884
PK07858.1
Cannabis sativa
PK07858.1
D
0.884
AMTR_s00002p00019320
Amborella trichopoda
AMTR_s00002p00019320
I
0.883
BGIOSGA026937
Oryza indica
BGIOSGA026937
I
0.870
BGIOSGA029777
Oryza indica
BGIOSGA029777
I
0.870
GRMZM2G107276
Zea mays
GRMZM2G107276
I
0.870
GRMZM2G526668
Zea mays
GRMZM2G526668
I
0.870
LPERR08G12910
Leersia perrieri
LPERR08G12910
I
0.870
LPERR09G06880
Leersia perrieri
LPERR09G06880
I
0.870
OBART08G15650
Oryza barthii
OBART08G15650
I
0.870
OGLUM08G16400
Oryza glumaepatula
OGLUM08G16400
I
0.870
OMERI08G12930
Oryza meridionalis
OMERI08G12930
I
0.870
OMERI09G07780
Oryza meridionalis
OMERI09G07780
I
0.870
ONIVA08G16750
Oryza nivara
ONIVA08G16750
I
0.870
ONIVA09G09550
Oryza nivara
ONIVA09G09550
I
0.870
OPUNC08G13730
Oryza punctata
OPUNC08G13730
I
0.870
ORGLA08G0137400
Oryza glaberrima
ORGLA08G0137400
I
0.870
ORUFI08G17560
Oryza rufipogon
ORUFI08G17560
I
0.870
ORUFI09G10670
Oryza rufipogon
ORUFI09G10670
I
0.870
OS08G0432800
Oryza sativa
OS08G0432800
I
0.870
OS09G0410700
Oryza sativa
OS09G0410700
I
0.870
Sb07g021170
Sorghum bicolor
Sb07g021170
I
0.870
Si013911m.g
Setaria italica
Si013911m.g
I
0.870
Lus10034271.g
Linum usitatissimum
Lus10034271.g
I
0.870
Lus10041493.g
Linum usitatissimum
Lus10041493.g
I
0.870
Solyc07g005400.2
Solanum lycopersicum
Solyc07g005400.2
I
0.865
GSMUA_Achr11G13440_001
Musa acuminata
GSMUA_Achr11G13440_001
I
0.864
GSMUA_Achr1G21280_001
Musa acuminata
GSMUA_Achr1G21280_001
I
0.864
BRADI4G29990
Brachypodium distachyon
BRADI4G29990
N
0.858
GRMZM2G176141
Zea mays
GRMZM2G176141
N
0.858
MLOC_12832
Hordeum vulgare
MLOC_12832
N
0.858
PGSC0003DMG400023577
Solanum tuberosum
PGSC0003DMG400023577
N
0.858
Sb02g024460
Sorghum bicolor
Sb02g024460
N
0.858
Si030496m.g
Setaria italica
Si030496m.g
N
0.858
Solyc04g014360.2
Solanum lycopersicum
Solyc04g014360.2
N
0.858
Traes_5BL_CF90A7CAE
Triticum aestivum
Traes_5BL_CF90A7CAE
N
0.858
Aquca_007_00571
Aquilegia coerulea
Aquca_007_00571
N
0.858
AMTR_s00065p00184910
Amborella trichopoda
AMTR_s00065p00184910
I
0.853
BHLH66
Arabidopsis thaliana
AT2G24260
I
0.853
LRL2
Arabidopsis thaliana
AT4G30980
D
0.853
BHLH82
Arabidopsis thaliana
AT5G58010
I
0.853
BGIOSGA021777
Oryza indica
BGIOSGA021777
I
0.853
BGIOSGA029759
Oryza indica
BGIOSGA029759
I
0.853
Bo1g011740
Brassica oleracea
Bo1g011740
I
0.853
Bo2g028920
Brassica oleracea
Bo2g028920
I
0.853
Bo3g018990
Brassica oleracea
Bo3g018990
I
0.853
Bo4g154370
Brassica oleracea
Bo4g154370
I
0.853
Bo8g099910
Brassica oleracea
Bo8g099910
I
0.853
Bo9g133640
Brassica oleracea
Bo9g133640
I
0.853
Bra002679
Brassica rapa
Bra002679
I
0.853
Bra006788
Brassica rapa
Bra006788
I
0.853
Bra007863
Brassica rapa
Bra007863
I
0.853
Bra011237
Brassica rapa
Bra011237
I
0.853
Bra020398
Brassica rapa
Bra020398
I
0.853
Bra032111
Brassica rapa
Bra032111
I
0.853
BRADI1G47350
Brachypodium distachyon
BRADI1G47350
I
0.853
LRL3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001435
I
0.853
LRL1
Arabidopsis lyrata
fgenesh2_kg.4__341__AT2G24260.1
I
0.853
LRL2
Arabidopsis lyrata
fgenesh2_kg.7__1084__AT4G30980.1
I
0.853
GLYMA02G36380
Glycine max
GLYMA02G36380
I
0.853
GLYMA09G14380
Glycine max
GLYMA09G14380
I
0.853
GLYMA15G33020
Glycine max
GLYMA15G33020
I
0.853
GLYMA17G08300
Glycine max
GLYMA17G08300
I
0.853
GRMZM2G027563
Zea mays
GRMZM2G027563
I
0.853
GRMZM2G067654
Zea mays
GRMZM2G067654
I
0.853
GSMUA_Achr10G24090_001
Musa acuminata
GSMUA_Achr10G24090_001
I
0.853
GSMUA_Achr10G30710_001
Musa acuminata
GSMUA_Achr10G30710_001
I
0.853
GSMUA_Achr3G04630_001
Musa acuminata
GSMUA_Achr3G04630_001
I
0.853
GSMUA_Achr4G01910_001
Musa acuminata
GSMUA_Achr4G01910_001
I
0.853
LPERR02G29460
Leersia perrieri
LPERR02G29460
I
0.853
LPERR09G07210
Leersia perrieri
LPERR09G07210
I
0.853
MLOC_38567
Hordeum vulgare
MLOC_38567
I
0.853
MTR_4g131160
Medicago truncatula
MTR_4g131160
I
0.853
OB06G14990
Oryza brachyantha
OB06G14990
I
0.853
OBART06G05420
Oryza barthii
OBART06G05420
I
0.853
OGLUM02G37030
Oryza glumaepatula
OGLUM02G37030
I
0.853
OGLUM06G05610
Oryza glumaepatula
OGLUM06G05610
I
0.853
OGLUM09G10750
Oryza glumaepatula
OGLUM09G10750
I
0.853
OMERI02G33790
Oryza meridionalis
OMERI02G33790
I
0.853
ONIVA02G37880
Oryza nivara
ONIVA02G37880
I
0.853
ONIVA06G06250
Oryza nivara
ONIVA06G06250
I
0.853
ONIVA09G10010
Oryza nivara
ONIVA09G10010
I
0.853
ORGLA02G0311000
Oryza glaberrima
ORGLA02G0311000
I
0.853
ORUFI02G37320
Oryza rufipogon
ORUFI02G37320
I
0.853
ORUFI06G05560
Oryza rufipogon
ORUFI06G05560
I
0.853
OS06G0184000
Oryza sativa
OS06G0184000
I
0.853
PGSC0003DMG400007827
Solanum tuberosum
PGSC0003DMG400007827
I
0.853
PGSC0003DMG400011133
Solanum tuberosum
PGSC0003DMG400011133
I
0.853
POPTR_0018s11800
Populus trichocarpa
POPTR_0018s11800
I
0.853
PRUPE_ppa005254mg
Prunus persica
PRUPE_ppa005254mg
I
0.853
Sb02g024750
Sorghum bicolor
Sb02g024750
I
0.853
Sb04g035890
Sorghum bicolor
Sb04g035890
I
0.853
Sb10g005650
Sorghum bicolor
Sb10g005650
I
0.853
SELMODRAFT_422025
Selaginella moellendorffii
SELMODRAFT_422025
I
0.853
SELMODRAFT_444782
Selaginella moellendorffii
SELMODRAFT_444782
I
0.853
Si017553m.g
Setaria italica
Si017553m.g
I
0.853
Si029708m.g
Setaria italica
Si029708m.g
I
0.853
Solyc12g010170.1
Solanum lycopersicum
Solyc12g010170.1
I
0.853
TCM_037077
Theobroma cacao
TCM_037077
I
0.853
Traes_6AL_FD6EC5EA9
Triticum aestivum
Traes_6AL_FD6EC5EA9
I
0.853
TRIUR3_33768
Triticum urartu
TRIUR3_33768
I
0.853
VIT_11s0037g00040
Vitis vinifera
VIT_11s0037g00040
I
0.853
Ca_03340
Cicer arietinum
Ca_03340
I
0.853
Cla013823
Citrullus lanatus
Cla013823
I
0.853
Cla019007
Citrullus lanatus
Cla019007
I
0.853
Pm027715
Prunus mume
Pm027715
I
0.853
29737.m001209
Ricinus communis
29737.m001209
I
0.853
cassava22164.valid.m1
Manihot esculenta
cassava22164.valid.m1
I
0.853
cassava22165.valid.m1
Manihot esculenta
cassava22165.valid.m1
I
0.853
Cucsa.132830
Cucumis sativus
Cucsa.132830
I
0.853
Cucsa.350940
Cucumis sativus
Cucsa.350940
I
0.853
e_gw1.173.38.1
Physcomitrella patens
e_gw1.173.38.1
I
0.853
e_gw1.209.40.1
Physcomitrella patens
e_gw1.209.40.1
D
0.853
mgf001459m
Mimulus guttatus
mgf001459m
I
0.853
mgf009435m
Mimulus guttatus
mgf009435m
I
0.853
mgf014585m
Mimulus guttatus
mgf014585m
I
0.853
Aquca_016_00200
Aquilegia coerulea
Aquca_016_00200
I
0.853
Bostr.26833s0448
Boechera stricta
Bostr.26833s0448
I
0.853
Bostr.27895s0056
Boechera stricta
Bostr.27895s0056
I
0.853
Bostr.7867s0954
Boechera stricta
Bostr.7867s0954
I
0.853
Cagra.0380s0028
Capsella grandiflora
Cagra.0380s0028
I
0.853
Cagra.2848s0086
Capsella grandiflora
Cagra.2848s0086
I
0.853
Cagra.4091s0032
Capsella grandiflora
Cagra.4091s0032
I
0.853
Carubv10005248m.g
Capsella rubella
Carubv10005248m.g
I
0.853
Carubv10023532m.g
Capsella rubella
Carubv10023532m.g
I
0.853
Carubv10028492m.g
Capsella rubella
Carubv10028492m.g
I
0.853
Ciclev10008192m.g
Citrus clementina
Ciclev10008192m.g
I
0.853
Eucgr.C00360
Eucalyptus grandis
Eucgr.C00360
I
0.853
Eucgr.C02592
Eucalyptus grandis
Eucgr.C02592
I
0.853
evm.TU.contig_30708.1
Carica papaya
evm.TU.contig_30708.1
I
0.853
gene10062-v1.0-hybrid
Fragaria vesca
gene10062-v1.0-hybrid
I
0.853
Gorai.009G055200
Gossypium raimondii
Gorai.009G055200
I
0.853
Lus10021846.g
Linum usitatissimum
Lus10021846.g
I
0.853
MDP0000121522
Malus domestica
MDP0000121522
I
0.853
MDP0000534784
Malus domestica
MDP0000534784
I
0.853
orange1.1g012156m.g
Citrus sinensis
orange1.1g012156m.g
I
0.853
Pavir.Aa00205
Panicum virgatum
Pavir.Aa00205
I
0.853
Pavir.Ab03158
Panicum virgatum
Pavir.Ab03158
I
0.853
Pavir.Ba01914
Panicum virgatum
Pavir.Ba01914
I
0.853
Pavir.Bb02117
Panicum virgatum
Pavir.Bb02117
I
0.853
Pavir.Da02078
Panicum virgatum
Pavir.Da02078
I
0.853
Pavir.J04712
Panicum virgatum
Pavir.J04712
I
0.853
SapurV1A.0100s0120
Salix purpurea
SapurV1A.0100s0120
I
0.853
SapurV1A.0347s0080
Salix purpurea
SapurV1A.0347s0080
I
0.853
Thhalv10000220m.g
Eutrema salsugineum
Thhalv10000220m.g
I
0.853
Thhalv10014212m.g
Eutrema salsugineum
Thhalv10014212m.g
I
0.853
Thhalv10025656m.g
Eutrema salsugineum
Thhalv10025656m.g
I
0.853
PK14040.1
Cannabis sativa
PK14040.1
I
0.853
chr6.CM0037.770.nc
Lotus japonicus
chr6.CM0037.770.nc
I
0.853
Ciclev10020323m.g
Citrus clementina
Ciclev10020323m.g
I
0.852
orange1.1g026943m.g
Citrus sinensis
orange1.1g026943m.g
I
0.852
30068.m002581
Ricinus communis
30068.m002581
I
0.850
evm.TU.supercontig_1892.1
Carica papaya
evm.TU.supercontig_1892.1
I
0.850
Aquca_081_00012
Aquilegia coerulea
Aquca_081_00012
I
0.849
OLONG_011765
Oryza longistaminata
OLONG_011765
N
0.848
Gorai.009G230000
Gossypium raimondii
Gorai.009G230000
N
0.847
Pavir.Ba01821
Panicum virgatum
Pavir.Ba01821
N
0.847
Pavir.Bb02155
Panicum virgatum
Pavir.Bb02155
N
0.847
GSMUA_Achr5G29390_001
Musa acuminata
GSMUA_Achr5G29390_001
N
0.846
MTR_5g066080
Medicago truncatula
MTR_5g066080
N
0.846
Ca_14981
Cicer arietinum
Ca_14981
N
0.846
BRADI3G36610
Brachypodium distachyon
BRADI3G36610
N
0.842
GLYMA01G02930
Glycine max
GLYMA01G02930
N
0.842
TCM_000997
Theobroma cacao
TCM_000997
N
0.842
VIT_08s0040g01240
Vitis vinifera
VIT_08s0040g01240
I
0.842
Ca_18110
Cicer arietinum
Ca_18110
N
0.842
Aquca_004_00748
Aquilegia coerulea
Aquca_004_00748
I
0.842
evm.TU.supercontig_55.51
Carica papaya
evm.TU.supercontig_55.51
N
0.842
Gorai.012G124100
Gossypium raimondii
Gorai.012G124100
N
0.842
GRMZM2G350165
Zea mays
GRMZM2G350165
I
0.841
SELMODRAFT_24890
Selaginella moellendorffii
SELMODRAFT_24890
I
0.841
SELMODRAFT_24892
Selaginella moellendorffii
SELMODRAFT_24892
I
0.841
AMTR_s00007p00170710
Amborella trichopoda
AMTR_s00007p00170710
I
0.840
GLYMA17G19570
Glycine max
GLYMA17G19570
I
0.840
Solyc04g078690.2
Solanum lycopersicum
Solyc04g078690.2
I
0.840
mg025182m
Mimulus guttatus
mg025182m
I
0.840
MDP0000606021
Malus domestica
MDP0000606021
I
0.840
orange1.1g022782m.g
Citrus sinensis
orange1.1g022782m.g
I
0.840
AMTR_s00101p00150740
Amborella trichopoda
AMTR_s00101p00150740
I
0.839