Carubv10027166m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10027166m.g T049452_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT4G25400
M09786_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G25400_01 		0.873 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027166m bHLH 27 79

Links

Other bHLH family TFs
Other Capsella rubella TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s14080 Populus trichocarpa POPTR_0012s14080 I 0.914
cassava43207.valid.m1 Manihot esculenta cassava43207.valid.m1 I 0.914
Bostr.15774s0324 Boechera stricta Bostr.15774s0324 I 0.914
Cagra.0277s0021 Capsella grandiflora Cagra.0277s0021 I 0.914
Solyc06g035490.2 Solanum lycopersicum Solyc06g035490.2 I 0.903
Pm019419 Prunus mume Pm019419 I 0.902
cassava45968.m1 Manihot esculenta cassava45968.m1 I 0.902
LjSGA_023375.1 Lotus japonicus LjSGA_023375.1 I 0.902
AT5G51780 Arabidopsis thaliana AT5G51780 I 0.894
Bo7g110280 Brassica oleracea Bo7g110280 I 0.894
fgenesh2_kg.8__1059__AT5G51780.1 Arabidopsis lyrata fgenesh2_kg.8__1059__AT5G51780.1 I 0.894
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.894
Ca_22233 Cicer arietinum Ca_22233 I 0.891
PK15358.1 Cannabis sativa PK15358.1 I 0.891
cassava21379.m1 Manihot esculenta cassava21379.m1 I 0.890
Ciclev10006628m.g Citrus clementina Ciclev10006628m.g I 0.890
orange1.1g036406m.g Citrus sinensis orange1.1g036406m.g I 0.890
TCM_016133 Theobroma cacao TCM_016133 I 0.886
TCM_016134 Theobroma cacao TCM_016134 I 0.886
MDP0000246258 Malus domestica MDP0000246258 I 0.882
Bra019167 Brassica rapa Bra019167 I 0.881
Thhalv10009922m.g Eutrema salsugineum Thhalv10009922m.g I 0.881
Gorai.006G196500 Gossypium raimondii Gorai.006G196500 I 0.880
GLYMA09G27630 Glycine max GLYMA09G27630 N 0.879
MTR_0007s0380 Medicago truncatula MTR_0007s0380 N 0.879
MTR_1g102370 Medicago truncatula MTR_1g102370 N 0.878
30147.m014147 Ricinus communis 30147.m014147 N 0.878
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.873
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.873
Cagra.0568s0165 Capsella grandiflora Cagra.0568s0165 N 0.872
Carubv10011792m.g Capsella rubella Carubv10011792m.g N 0.872
GLYMA09G27610 Glycine max GLYMA09G27610 I 0.871
GLYMA16G32610 Glycine max GLYMA16G32610 I 0.871
PK11667.1 Cannabis sativa PK11667.1 I 0.871
Bra022562 Brassica rapa Bra022562 I 0.870
GLYMA16G32620 Glycine max GLYMA16G32620 N 0.868
Bo2g048240 Brassica oleracea Bo2g048240 I 0.859
Ciclev10006639m.g Citrus clementina Ciclev10006639m.g N 0.858
GLYMA10G38630 Glycine max GLYMA10G38630 N 0.855
GLYMA20G29120 Glycine max GLYMA20G29120 N 0.855
evm.TU.supercontig_4.179 Carica papaya evm.TU.supercontig_4.179 N 0.854
gene32346-v1.0-hybrid Fragaria vesca gene32346-v1.0-hybrid N 0.854
Gorai.008G282300 Gossypium raimondii Gorai.008G282300 I 0.852
Bostr.13671s0206 Boechera stricta Bostr.13671s0206 I 0.851
gene13365-v1.0-hybrid Fragaria vesca gene13365-v1.0-hybrid N 0.851
Thhalv10015297m.g Eutrema salsugineum Thhalv10015297m.g I 0.846
Eucgr.F04119 Eucalyptus grandis Eucgr.F04119 I 0.845
evm.TU.supercontig_4.181 Carica papaya evm.TU.supercontig_4.181 I 0.844
SapurV1A.0881s0080 Salix purpurea SapurV1A.0881s0080 N 0.843
Lus10027394.g Linum usitatissimum Lus10027394.g N 0.842
MTR_0007s0330 Medicago truncatula MTR_0007s0330 N 0.841