CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10006628m.g
(
Citrus clementina
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Ciclev10006628m.g
T049482_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT4G25400
M09786_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G25400_01
0.849
0.654
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10006628m
bHLH
76
128
KKLMHRDVERQRRQEMATLYASLRALLPLEFIKGKRSISDQMNEGVNYVKYLE
Links
Other
bHLH
family TFs
Other
Citrus clementina
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g036406m.g
Citrus sinensis
orange1.1g036406m.g
I
0.914
Bra022562
Brassica rapa
Bra022562
I
0.894
POPTR_0012s14080
Populus trichocarpa
POPTR_0012s14080
I
0.890
cassava21379.m1
Manihot esculenta
cassava21379.m1
I
0.890
cassava43207.valid.m1
Manihot esculenta
cassava43207.valid.m1
I
0.890
Bostr.15774s0324
Boechera stricta
Bostr.15774s0324
I
0.890
Cagra.0277s0021
Capsella grandiflora
Cagra.0277s0021
I
0.890
Carubv10027166m.g
Capsella rubella
Carubv10027166m.g
I
0.890
Bo2g048240
Brassica oleracea
Bo2g048240
I
0.883
Solyc06g035490.2
Solanum lycopersicum
Solyc06g035490.2
I
0.879
MTR_1g102370
Medicago truncatula
MTR_1g102370
N
0.878
Pm019419
Prunus mume
Pm019419
I
0.878
30147.m014147
Ricinus communis
30147.m014147
N
0.878
cassava45968.m1
Manihot esculenta
cassava45968.m1
I
0.878
LjSGA_023375.1
Lotus japonicus
LjSGA_023375.1
I
0.878
AT5G51780
Arabidopsis thaliana
AT5G51780
I
0.870
Bo7g110280
Brassica oleracea
Bo7g110280
I
0.870
fgenesh2_kg.8__1059__AT5G51780.1
Arabidopsis lyrata
fgenesh2_kg.8__1059__AT5G51780.1
I
0.870
Thhalv10026341m.g
Eutrema salsugineum
Thhalv10026341m.g
I
0.870
Eucgr.F04119
Eucalyptus grandis
Eucgr.F04119
I
0.869
Ca_22233
Cicer arietinum
Ca_22233
I
0.867
PK15358.1
Cannabis sativa
PK15358.1
I
0.867
Lus10027394.g
Linum usitatissimum
Lus10027394.g
N
0.866
TCM_016133
Theobroma cacao
TCM_016133
I
0.862
TCM_016134
Theobroma cacao
TCM_016134
I
0.862
Ciclev10006639m.g
Citrus clementina
Ciclev10006639m.g
N
0.858
MDP0000246258
Malus domestica
MDP0000246258
I
0.858
Bra019167
Brassica rapa
Bra019167
I
0.857
Thhalv10009922m.g
Eutrema salsugineum
Thhalv10009922m.g
I
0.857
Gorai.006G196500
Gossypium raimondii
Gorai.006G196500
I
0.856
GLYMA09G27630
Glycine max
GLYMA09G27630
N
0.855
MTR_0007s0380
Medicago truncatula
MTR_0007s0380
N
0.855
Aquca_013_00494
Aquilegia coerulea
Aquca_013_00494
N
0.855
AT4G25400
Arabidopsis thaliana
AT4G25400
D
0.849
Bostr.7867s0349
Boechera stricta
Bostr.7867s0349
I
0.849
Cagra.0568s0165
Capsella grandiflora
Cagra.0568s0165
N
0.848
Cagra.2248s0016
Capsella grandiflora
Cagra.2248s0016
I
0.848
Carubv10006264m.g
Capsella rubella
Carubv10006264m.g
I
0.848
Carubv10011792m.g
Capsella rubella
Carubv10011792m.g
N
0.848
GLYMA09G27610
Glycine max
GLYMA09G27610
I
0.847
GLYMA16G32610
Glycine max
GLYMA16G32610
I
0.847
PK11667.1
Cannabis sativa
PK11667.1
I
0.847
GLYMA16G32620
Glycine max
GLYMA16G32620
N
0.844
evm.TU.supercontig_4.181
Carica papaya
evm.TU.supercontig_4.181
I
0.844