Ciclev10012135m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10012135m.g T049494_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.860 0.765
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.860 0.765
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.860 0.765
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.840 0.863
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.840 0.863
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.840 0.863
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.840 0.863
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10012135m bHLH 44 94
Ciclev10012176m bHLH 44 94

Links

Other bHLH family TFs
Other Citrus clementina TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.914
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.890
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.890
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.890
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.890
TCM_019015 Theobroma cacao TCM_019015 I 0.890
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.890
Ca_22043 Cicer arietinum Ca_22043 I 0.890
29790.m000843 Ricinus communis 29790.m000843 I 0.890
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.890
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.890
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.890
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.890
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.890
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.890
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.890
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.890
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.890
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.890
PK00238.1 Cannabis sativa PK00238.1 I 0.890
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.888
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.870
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.868
Si013622m.g Setaria italica Si013622m.g I 0.868
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.868
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.868
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.866
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.861
BIM2 Arabidopsis thaliana AT1G69010 D 0.860
Bo2g062560 Brassica oleracea Bo2g062560 I 0.860
Bo6g108530 Brassica oleracea Bo6g108530 I 0.860
Bra004355 Brassica rapa Bra004355 I 0.860
Bra038332 Brassica rapa Bra038332 I 0.860
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.860
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.860
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.860
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.860
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.860
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.860
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.860
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.860
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.860
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.860
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.860
TCM_011433 Theobroma cacao TCM_011433 I 0.860
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.860
Cla022382 Citrullus lanatus Cla022382 I 0.860
30138.m003899 Ricinus communis 30138.m003899 I 0.860
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.860
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.860
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.860
mgf011829m Mimulus guttatus mgf011829m I 0.860
mgf013208m Mimulus guttatus mgf013208m I 0.860
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.860
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.860
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.860
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.860
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.860
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.860
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.860
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.860
MDP0000261293 Malus domestica MDP0000261293 I 0.860
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.860
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.860
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.860
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.858
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.858
PK01364.1 Cannabis sativa PK01364.1 I 0.858
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.849
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.847
BIM1 Arabidopsis thaliana AT5G08130 D 0.840
Bo2g161110 Brassica oleracea Bo2g161110 I 0.840
Bo3g004690 Brassica oleracea Bo3g004690 I 0.840
Bo5g020460 Brassica oleracea Bo5g020460 I 0.840
Bo9g174770 Brassica oleracea Bo9g174770 I 0.840
Bra009322 Brassica rapa Bra009322 I 0.840
Bra029354 Brassica rapa Bra029354 I 0.840
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.840
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.840
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.840
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.840
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.840
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.840
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.840
TCM_014392 Theobroma cacao TCM_014392 I 0.840
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.840
30138.m003913 Ricinus communis 30138.m003913 I 0.840
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.840
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.840
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.840
mgf001137m Mimulus guttatus mgf001137m I 0.840
mgf005849m Mimulus guttatus mgf005849m I 0.840
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.840
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.840
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.840
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.840
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.840
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.840
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.840
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.840
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.840
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.840
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.840
PK10562.1 Cannabis sativa PK10562.1 I 0.840