CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10026967m.g
(
Citrus clementina
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Ciclev10026967m.g
T049545_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10026967m
bHLH
172
217
QSVAARHRREMISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK
Links
Other
bHLH
family TFs
Other
Citrus clementina
TFs
275 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g043072m.g
Citrus sinensis
orange1.1g043072m.g
N
0.914
AMTR_s00008p00265010
Amborella trichopoda
AMTR_s00008p00265010
N
0.879
HEC2
Arabidopsis thaliana
AT3G50330
N
0.879
HEC3
Arabidopsis thaliana
AT5G09750
N
0.879
HEC1
Arabidopsis thaliana
AT5G67060
N
0.879
BGIOSGA026828
Oryza indica
BGIOSGA026828
N
0.879
BGIOSGA027780
Oryza indica
BGIOSGA027780
N
0.879
BGIOSGA030896
Oryza indica
BGIOSGA030896
N
0.879
Bo1g084640
Brassica oleracea
Bo1g084640
N
0.879
Bo2g009510
Brassica oleracea
Bo2g009510
N
0.879
Bo2g167880
Brassica oleracea
Bo2g167880
N
0.879
Bo7g064100
Brassica oleracea
Bo7g064100
N
0.879
Bo8g079710
Brassica oleracea
Bo8g079710
N
0.879
Bo9g020420
Brassica oleracea
Bo9g020420
N
0.879
Bo9g173860
Brassica oleracea
Bo9g173860
N
0.879
Bra012128
Brassica rapa
Bra012128
N
0.879
Bra028620
Brassica rapa
Bra028620
N
0.879
Bra030002
Brassica rapa
Bra030002
N
0.879
Bra036071
Brassica rapa
Bra036071
N
0.879
Bra036801
Brassica rapa
Bra036801
N
0.879
Bra037128
Brassica rapa
Bra037128
N
0.879
BRADI3G13300
Brachypodium distachyon
BRADI3G13300
N
0.879
BRADI3G38250
Brachypodium distachyon
BRADI3G38250
N
0.879
BRADI4G32060
Brachypodium distachyon
BRADI4G32060
N
0.879
F775_04427
Aegilops tauschii
F775_04427
N
0.879
F775_52433
Aegilops tauschii
F775_52433
N
0.879
HEC2
Arabidopsis lyrata
fgenesh2_kg.5__1376__AT3G50330.1
N
0.879
HEC3
Arabidopsis lyrata
fgenesh2_kg.6__929__AT5G09750.1
N
0.879
HEC1
Arabidopsis lyrata
fgenesh2_kg.8__2711__AT5G67060.1
N
0.879
GLYMA01G39360
Glycine max
GLYMA01G39360
N
0.879
GLYMA04G04190
Glycine max
GLYMA04G04190
N
0.879
GLYMA05G19920
Glycine max
GLYMA05G19920
N
0.879
GLYMA06G04380
Glycine max
GLYMA06G04380
N
0.879
GLYMA11G05920
Glycine max
GLYMA11G05920
N
0.879
GLYMA17G19830
Glycine max
GLYMA17G19830
N
0.879
GRMZM2G134735
Zea mays
GRMZM2G134735
N
0.879
GRMZM2G414252
Zea mays
GRMZM2G414252
N
0.879
GRMZM2G471635
Zea mays
GRMZM2G471635
N
0.879
GSMUA_Achr10G25590_001
Musa acuminata
GSMUA_Achr10G25590_001
N
0.879
GSMUA_Achr5G01290_001
Musa acuminata
GSMUA_Achr5G01290_001
N
0.879
GSMUA_Achr6G18580_001
Musa acuminata
GSMUA_Achr6G18580_001
N
0.879
LPERR08G01030
Leersia perrieri
LPERR08G01030
N
0.879
LPERR08G14680
Leersia perrieri
LPERR08G14680
N
0.879
LPERR09G09120
Leersia perrieri
LPERR09G09120
N
0.879
MLOC_16429
Hordeum vulgare
MLOC_16429
N
0.879
MTR_5g017210
Medicago truncatula
MTR_5g017210
N
0.879
OB08G10720
Oryza brachyantha
OB08G10720
N
0.879
OGLUM08G00660
Oryza glumaepatula
OGLUM08G00660
N
0.879
OGLUM08G18600
Oryza glumaepatula
OGLUM08G18600
N
0.879
OGLUM09G13100
Oryza glumaepatula
OGLUM09G13100
N
0.879
OMERI08G00980
Oryza meridionalis
OMERI08G00980
N
0.879
OMERI09G10060
Oryza meridionalis
OMERI09G10060
N
0.879
ONIVA03G20840
Oryza nivara
ONIVA03G20840
N
0.879
ONIVA08G00590
Oryza nivara
ONIVA08G00590
N
0.879
ONIVA08G19790
Oryza nivara
ONIVA08G19790
N
0.879
OPUNC08G00600
Oryza punctata
OPUNC08G00600
N
0.879
OPUNC08G15570
Oryza punctata
OPUNC08G15570
N
0.879
OPUNC09G11020
Oryza punctata
OPUNC09G11020
N
0.879
ORGLA08G0155700
Oryza glaberrima
ORGLA08G0155700
N
0.879
ORGLA08G0237200
Oryza glaberrima
ORGLA08G0237200
N
0.879
ORGLA09G0096500
Oryza glaberrima
ORGLA09G0096500
N
0.879
ORUFI08G00650
Oryza rufipogon
ORUFI08G00650
N
0.879
ORUFI08G19930
Oryza rufipogon
ORUFI08G19930
N
0.879
ORUFI09G13650
Oryza rufipogon
ORUFI09G13650
N
0.879
OS08G0108500
Oryza sativa
OS08G0108500
N
0.879
OS09G0455300
Oryza sativa
OS09G0455300
N
0.879
PGSC0003DMG400007964
Solanum tuberosum
PGSC0003DMG400007964
N
0.879
POPTR_0002s12660
Populus trichocarpa
POPTR_0002s12660
N
0.879
POPTR_0005s18210
Populus trichocarpa
POPTR_0005s18210
N
0.879
POPTR_0014s02720
Populus trichocarpa
POPTR_0014s02720
N
0.879
PRUPE_ppa021226mg
Prunus persica
PRUPE_ppa021226mg
N
0.879
Sb02g026530
Sorghum bicolor
Sb02g026530
N
0.879
Sb07g000900
Sorghum bicolor
Sb07g000900
N
0.879
Sb07g000910
Sorghum bicolor
Sb07g000910
N
0.879
Sb07g022920
Sorghum bicolor
Sb07g022920
N
0.879
Si015197m.g
Setaria italica
Si015197m.g
N
0.879
Si015349m.g
Setaria italica
Si015349m.g
N
0.879
Si030966m.g
Setaria italica
Si030966m.g
N
0.879
Solyc04g078790.2
Solanum lycopersicum
Solyc04g078790.2
N
0.879
TCM_000632
Theobroma cacao
TCM_000632
N
0.879
TCM_033818
Theobroma cacao
TCM_033818
N
0.879
Traes_5BL_DDC2491F7
Triticum aestivum
Traes_5BL_DDC2491F7
N
0.879
Traes_6AS_C1A37E015
Triticum aestivum
Traes_6AS_C1A37E015
N
0.879
Traes_7DL_F43F7A9A3
Triticum aestivum
Traes_7DL_F43F7A9A3
N
0.879
TRIUR3_19098
Triticum urartu
TRIUR3_19098
N
0.879
VIT_07s0031g00550
Vitis vinifera
VIT_07s0031g00550
N
0.879
Ca_01550
Cicer arietinum
Ca_01550
N
0.879
Ca_09282
Cicer arietinum
Ca_09282
N
0.879
Cla020973
Citrullus lanatus
Cla020973
N
0.879
Cla022928
Citrullus lanatus
Cla022928
N
0.879
Pm005293
Prunus mume
Pm005293
N
0.879
30115.m001220
Ricinus communis
30115.m001220
N
0.879
30170.m013861
Ricinus communis
30170.m013861
N
0.879
cassava41909.m1
Manihot esculenta
cassava41909.m1
N
0.879
cassava45275.m1
Manihot esculenta
cassava45275.m1
N
0.879
cassava8495.m1
Manihot esculenta
cassava8495.m1
N
0.879
Cucsa.352300
Cucumis sativus
Cucsa.352300
N
0.879
Cucsa.396050
Cucumis sativus
Cucsa.396050
N
0.879
mg018414m
Mimulus guttatus
mg018414m
N
0.879
Aquca_007_00665
Aquilegia coerulea
Aquca_007_00665
N
0.879
Bostr.0568s0128
Boechera stricta
Bostr.0568s0128
N
0.879
Bostr.13129s0018
Boechera stricta
Bostr.13129s0018
N
0.879
Bostr.6864s0212
Boechera stricta
Bostr.6864s0212
N
0.879
Cagra.0706s0009
Capsella grandiflora
Cagra.0706s0009
N
0.879
Cagra.1085s0086
Capsella grandiflora
Cagra.1085s0086
N
0.879
Cagra.2428s0003
Capsella grandiflora
Cagra.2428s0003
N
0.879
Carubv10003900m.g
Capsella rubella
Carubv10003900m.g
N
0.879
Carubv10019056m.g
Capsella rubella
Carubv10019056m.g
N
0.879
Carubv10027898m.g
Capsella rubella
Carubv10027898m.g
N
0.879
Ciclev10003815m.g
Citrus clementina
Ciclev10003815m.g
N
0.879
Eucgr.F00216
Eucalyptus grandis
Eucgr.F00216
N
0.879
Eucgr.H01682
Eucalyptus grandis
Eucgr.H01682
N
0.879
Eucgr.H02048
Eucalyptus grandis
Eucgr.H02048
N
0.879
evm.TU.supercontig_49.31
Carica papaya
evm.TU.supercontig_49.31
N
0.879
evm.TU.supercontig_55.142
Carica papaya
evm.TU.supercontig_55.142
N
0.879
gene09115-v1.0-hybrid
Fragaria vesca
gene09115-v1.0-hybrid
N
0.879
gene23830-v1.0-hybrid
Fragaria vesca
gene23830-v1.0-hybrid
N
0.879
Gorai.003G025300
Gossypium raimondii
Gorai.003G025300
N
0.879
Gorai.007G213700
Gossypium raimondii
Gorai.007G213700
N
0.879
Gorai.009G212900
Gossypium raimondii
Gorai.009G212900
N
0.879
Gorai.010G020500
Gossypium raimondii
Gorai.010G020500
N
0.879
Lus10012670.g
Linum usitatissimum
Lus10012670.g
N
0.879
MDP0000123893
Malus domestica
MDP0000123893
N
0.879
MDP0000123894
Malus domestica
MDP0000123894
N
0.879
MDP0000249405
Malus domestica
MDP0000249405
N
0.879
orange1.1g024139m.g
Citrus sinensis
orange1.1g024139m.g
N
0.879
Pavir.Ba02034
Panicum virgatum
Pavir.Ba02034
N
0.879
Pavir.Fa00680
Panicum virgatum
Pavir.Fa00680
N
0.879
Pavir.Fa02152
Panicum virgatum
Pavir.Fa02152
N
0.879
Pavir.J20328
Panicum virgatum
Pavir.J20328
N
0.879
Pavir.J21912
Panicum virgatum
Pavir.J21912
N
0.879
Pavir.J39499
Panicum virgatum
Pavir.J39499
N
0.879
SapurV1A.0167s0080
Salix purpurea
SapurV1A.0167s0080
N
0.879
SapurV1A.0423s0010
Salix purpurea
SapurV1A.0423s0010
N
0.879
SapurV1A.2123s0040
Salix purpurea
SapurV1A.2123s0040
N
0.879
Thhalv10004846m.g
Eutrema salsugineum
Thhalv10004846m.g
N
0.879
Thhalv10011068m.g
Eutrema salsugineum
Thhalv10011068m.g
N
0.879
Thhalv10015330m.g
Eutrema salsugineum
Thhalv10015330m.g
N
0.879
PK01043.1
Cannabis sativa
PK01043.1
N
0.879
IND
Arabidopsis thaliana
AT4G00120
N
0.876
Bo3g054830
Brassica oleracea
Bo3g054830
N
0.876
Bra000979
Brassica rapa
Bra000979
N
0.876
IND1
Arabidopsis lyrata
fgenesh2_kg.6__3690__AT4G00120.1
N
0.876
GLYMA04G39210
Glycine max
GLYMA04G39210
N
0.876
GLYMA05G32410
Glycine max
GLYMA05G32410
N
0.876
GLYMA06G15730
Glycine max
GLYMA06G15730
N
0.876
GLYMA08G16570
Glycine max
GLYMA08G16570
N
0.876
MTR_3g101810
Medicago truncatula
MTR_3g101810
N
0.876
MTR_8g093500
Medicago truncatula
MTR_8g093500
N
0.876
PGSC0003DMG400028657
Solanum tuberosum
PGSC0003DMG400028657
N
0.876
POPTR_0005s06220
Populus trichocarpa
POPTR_0005s06220
N
0.876
XM_002310473.1
Populus trichocarpa
POPTR_0007s03950
N
0.876
PRUPE_ppa021410mg
Prunus persica
PRUPE_ppa021410mg
N
0.876
PRUPE_ppa022938mg
Prunus persica
PRUPE_ppa022938mg
N
0.876
Solyc11g005780.1
Solanum lycopersicum
Solyc11g005780.1
N
0.876
Solyc12g088790.1
Solanum lycopersicum
Solyc12g088790.1
N
0.876
TCM_001435
Theobroma cacao
TCM_001435
N
0.876
HEC3
Vitis vinifera
VIT_04s0044g01040
N
0.876
VIT_18s0001g10400
Vitis vinifera
VIT_18s0001g10400
N
0.876
Ca_02154
Cicer arietinum
Ca_02154
N
0.876
Ca_09667
Cicer arietinum
Ca_09667
N
0.876
Cla008578
Citrullus lanatus
Cla008578
N
0.876
Pm001707
Prunus mume
Pm001707
N
0.876
Pm026380
Prunus mume
Pm026380
N
0.876
30136.m001043
Ricinus communis
30136.m001043
N
0.876
cassava15224.m1
Manihot esculenta
cassava15224.m1
N
0.876
cassava5871.m1
Manihot esculenta
cassava5871.m1
N
0.876
Cucsa.101020
Cucumis sativus
Cucsa.101020
N
0.876
mgf019142m
Mimulus guttatus
mgf019142m
N
0.876
Aquca_010_00306
Aquilegia coerulea
Aquca_010_00306
N
0.876
Aquca_022_00317
Aquilegia coerulea
Aquca_022_00317
N
0.876
Bostr.14547s0021
Boechera stricta
Bostr.14547s0021
N
0.876
Cagra.1261s0004
Capsella grandiflora
Cagra.1261s0004
N
0.876
Carubv10003163m.g
Capsella rubella
Carubv10003163m.g
N
0.876
Eucgr.H04946
Eucalyptus grandis
Eucgr.H04946
N
0.876
gene17881-v1.0-hybrid
Fragaria vesca
gene17881-v1.0-hybrid
N
0.876
Gorai.011G116100
Gossypium raimondii
Gorai.011G116100
N
0.876
Lus10005710.g
Linum usitatissimum
Lus10005710.g
N
0.876
Lus10042647.g
Linum usitatissimum
Lus10042647.g
N
0.876
MDP0000420192
Malus domestica
MDP0000420192
N
0.876
MDP0000711774
Malus domestica
MDP0000711774
N
0.876
orange1.1g047850m.g
Citrus sinensis
orange1.1g047850m.g
N
0.876
SapurV1A.0352s0020
Salix purpurea
SapurV1A.0352s0020
N
0.876
SapurV1A.0550s0030
Salix purpurea
SapurV1A.0550s0030
N
0.876
Thhalv10029526m.g
Eutrema salsugineum
Thhalv10029526m.g
N
0.876
LjSGA_011209.1
Lotus japonicus
LjSGA_011209.1
N
0.876
LjT10C23.20.nc
Lotus japonicus
LjT10C23.20.nc
N
0.876
PGSC0003DMG400004039
Solanum tuberosum
PGSC0003DMG400004039
N
0.868
Solyc02g090950.1
Solanum lycopersicum
Solyc02g090950.1
N
0.868
Cla015855
Citrullus lanatus
Cla015855
N
0.868
Cucsa.360770
Cucumis sativus
Cucsa.360770
N
0.868
GRMZM2G354618
Zea mays
GRMZM2G354618
N
0.867
GRMZM5G812883
Zea mays
GRMZM5G812883
N
0.867
GRMZM5G817854
Zea mays
GRMZM5G817854
N
0.867
GRMZM5G818776
Zea mays
GRMZM5G818776
N
0.867
GSMUA_Achr9G15380_001
Musa acuminata
GSMUA_Achr9G15380_001
N
0.867
POPTR_0007s10950
Populus trichocarpa
POPTR_0007s10950
N
0.867
SapurV1A.0623s0130
Salix purpurea
SapurV1A.0623s0130
N
0.863
AMTR_s00071p00111940
Amborella trichopoda
AMTR_s00071p00111940
N
0.859
GSMUA_Achr9G29130_001
Musa acuminata
GSMUA_Achr9G29130_001
N
0.859
estExt_fgenesh1_pg.C_550008
Physcomitrella patens
estExt_fgenesh1_pg.C_550008
N
0.859
fgenesh1_pg.scaffold_273000011
Physcomitrella patens
fgenesh1_pg.scaffold_273000011
N
0.859
gw1.67.189.1
Physcomitrella patens
gw1.67.189.1
N
0.859
BGIOSGA001389
Oryza indica
BGIOSGA001389
N
0.856
BRADI2G41390
Brachypodium distachyon
BRADI2G41390
N
0.856
LPERR01G17090
Leersia perrieri
LPERR01G17090
N
0.856
OBART01G19850
Oryza barthii
OBART01G19850
N
0.856
OGLUM01G23470
Oryza glumaepatula
OGLUM01G23470
N
0.856
OMERI01G18460
Oryza meridionalis
OMERI01G18460
N
0.856
ONIVA01G07440
Oryza nivara
ONIVA01G07440
N
0.856
OPUNC01G20250
Oryza punctata
OPUNC01G20250
N
0.856
ORGLA01G0163600
Oryza glaberrima
ORGLA01G0163600
N
0.856
OS01G0566800
Oryza sativa
OS01G0566800
N
0.856
Sb03g025570
Sorghum bicolor
Sb03g025570
N
0.856
SELMODRAFT_405220
Selaginella moellendorffii
SELMODRAFT_405220
N
0.856
SELMODRAFT_415047
Selaginella moellendorffii
SELMODRAFT_415047
N
0.856
Si003753m.g
Setaria italica
Si003753m.g
N
0.856
TRAES3BF276900020CFD_g
Triticum aestivum
TRAES3BF276900020CFD_g
N
0.856
TRIUR3_28638
Triticum urartu
TRIUR3_28638
N
0.856
Pavir.Ea01618
Panicum virgatum
Pavir.Ea01618
N
0.856
Pavir.Eb02113
Panicum virgatum
Pavir.Eb02113
N
0.856
GRMZM2G111666
Zea mays
GRMZM2G111666
N
0.855
Sb03g032520
Sorghum bicolor
Sb03g032520
N
0.855
Si001743m.g
Setaria italica
Si001743m.g
N
0.855
Pavir.Eb02901
Panicum virgatum
Pavir.Eb02901
N
0.855
GSMUA_Achr8G24970_001
Musa acuminata
GSMUA_Achr8G24970_001
N
0.853
GLYMA13G42900
Glycine max
GLYMA13G42900
N
0.844
GLYMA15G02531
Glycine max
GLYMA15G02531
N
0.844
GSMUA_Achr8G23350_001
Musa acuminata
GSMUA_Achr8G23350_001
N
0.844
MTR_2g100490
Medicago truncatula
MTR_2g100490
N
0.844
MTR_8g015450
Medicago truncatula
MTR_8g015450
N
0.844
PGSC0003DMG400018986
Solanum tuberosum
PGSC0003DMG400018986
N
0.844
PRUPE_ppa015446mg
Prunus persica
PRUPE_ppa015446mg
N
0.844
Solyc03g121240.1
Solanum lycopersicum
Solyc03g121240.1
N
0.844
TCM_028961
Theobroma cacao
TCM_028961
N
0.844
VIT_09s0002g02700
Vitis vinifera
VIT_09s0002g02700
N
0.844
Ca_02767
Cicer arietinum
Ca_02767
N
0.844
Cla020499
Citrullus lanatus
Cla020499
N
0.844
Pm030884
Prunus mume
Pm030884
N
0.844
30146.m003443
Ricinus communis
30146.m003443
N
0.844
cassava2779.m1
Manihot esculenta
cassava2779.m1
N
0.844
cassava34914.m1
Manihot esculenta
cassava34914.m1
N
0.844
Cucsa.366890
Cucumis sativus
Cucsa.366890
N
0.844
mgf023933m
Mimulus guttatus
mgf023933m
N
0.844
Aquca_001_00189
Aquilegia coerulea
Aquca_001_00189
N
0.844
Ciclev10026976m.g
Citrus clementina
Ciclev10026976m.g
N
0.844
Eucgr.F03093
Eucalyptus grandis
Eucgr.F03093
N
0.844
evm.TU.supercontig_131.7
Carica papaya
evm.TU.supercontig_131.7
N
0.844
gene22897-v1.0-hybrid
Fragaria vesca
gene22897-v1.0-hybrid
N
0.844
Gorai.003G060900
Gossypium raimondii
Gorai.003G060900
N
0.844
Gorai.011G069200
Gossypium raimondii
Gorai.011G069200
N
0.844
Lus10003500.g
Linum usitatissimum
Lus10003500.g
N
0.844
Lus10009745.g
Linum usitatissimum
Lus10009745.g
N
0.844
MDP0000145937
Malus domestica
MDP0000145937
N
0.844
MDP0000166245
Malus domestica
MDP0000166245
N
0.844
orange1.1g020172m.g
Citrus sinensis
orange1.1g020172m.g
N
0.844
PK21140.1
Cannabis sativa
PK21140.1
N
0.844
Sb09g027030
Sorghum bicolor
Sb09g027030
N
0.842
Pavir.Ca00715
Panicum virgatum
Pavir.Ca00715
N
0.842
Pavir.J21430
Panicum virgatum
Pavir.J21430
N
0.842
BHLH87
Arabidopsis thaliana
AT3G21330
N
0.841
Bo5g101160
Brassica oleracea
Bo5g101160
N
0.841
Bra031275
Brassica rapa
Bra031275
N
0.841
fgenesh2_kg.3__2354__AT3G21330.1
Arabidopsis lyrata
fgenesh2_kg.3__2354__AT3G21330.1
N
0.841
GLYMA07G01611
Glycine max
GLYMA07G01611
N
0.841
GLYMA08G21130
Glycine max
GLYMA08G21130
N
0.841
GSMUA_Achr7G23410_001
Musa acuminata
GSMUA_Achr7G23410_001
N
0.841
Ca_10121
Cicer arietinum
Ca_10121
N
0.841
Bostr.19424s0519
Boechera stricta
Bostr.19424s0519
N
0.841
Cagra.1757s0024
Capsella grandiflora
Cagra.1757s0024
N
0.841
Carubv10013989m.g
Capsella rubella
Carubv10013989m.g
N
0.841
Thhalv10022273m.g
Eutrema salsugineum
Thhalv10022273m.g
N
0.841
Bo3g078540
Brassica oleracea
Bo3g078540
N
0.840
Bra001826
Brassica rapa
Bra001826
N
0.840
Lus10033488.g
Linum usitatissimum
Lus10033488.g
N
0.840