Eucgr.A02043 (Eucalyptus grandis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Eucgr.A02043 T049579_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.891 0.900
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.878 0.880
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.878 0.880
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.851 0.900
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.851 0.900
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.851 0.900
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.851 0.900
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.851 0.900
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.851 0.900
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.848 0.880
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.848 0.880
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.848 0.880
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.840 0.860
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.A02043.1 bHLH 373 422
Eucgr.A02043.2 bHLH 338 387
Eucgr.A02043.3 bHLH 338 387
Eucgr.A02043.4 bHLH 338 387

Links

Other bHLH family TFs
Other Eucalyptus grandis TFs

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00004p00270570 Amborella trichopoda AMTR_s00004p00270570 N
Aquca_008_00025 Aquilegia coerulea Aquca_008_00025 N
PK21020.1 Cannabis sativa PK21020.1 N
evm.TU.supercontig_34.30 Carica papaya evm.TU.supercontig_34.30 N
Ciclev10004715m.g Citrus clementina Ciclev10004715m.g N
Eucgr.F04460 Eucalyptus grandis Eucgr.F04460 N
gene18499-v1.0-hybrid Fragaria vesca gene18499-v1.0-hybrid N
GLYMA15G28410 Glycine max GLYMA15G28410 N
Gorai.002G110100 Gossypium raimondii Gorai.002G110100 N
Lus10031172.g Linum usitatissimum Lus10031172.g N
Lus10031748.g Linum usitatissimum Lus10031748.g N
cassava20476.m1 Manihot esculenta cassava20476.m1 N
MTR_8g442410 Medicago truncatula MTR_8g442410 N
PDK_20s1507561g001 Phoenix dactylifera PDK_20s1507561g001 N
POPTR_0005s09790 Populus trichocarpa POPTR_0005s09790 N
Pm011106 Prunus mume Pm011106 N
PRUPE_ppa004256mg Prunus persica PRUPE_ppa004256mg N
30169.m006306 Ricinus communis 30169.m006306 N
SapurV1A.0404s0280 Salix purpurea SapurV1A.0404s0280 N
TCM_033446 Theobroma cacao TCM_033446 N
VIT_19s0085g00540 Vitis vinifera VIT_19s0085g00540 N