CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.007G072600
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.007G072600
T050008_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.914
1.000
AMS
M09782_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AMS_01
0.847
0.833
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.007G072600.1
bHLH
332
379
AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELL
Gorai.007G072600.2
bHLH
332
381
AKNLMAERRRRKKLNDRLYMLRSVVPKISKVEVRVREGRAVNIHMFCARR
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
245 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.914
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.914
SCRM
Arabidopsis thaliana
AT3G26744
D
0.914
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.914
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.914
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.914
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.914
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.914
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.914
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.914
Bra016749
Brassica rapa
Bra016749
I
0.914
Bra019794
Brassica rapa
Bra019794
I
0.914
Bra025226
Brassica rapa
Bra025226
I
0.914
Bra032947
Brassica rapa
Bra032947
I
0.914
Bra034246
Brassica rapa
Bra034246
I
0.914
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.914
F775_14780
Aegilops tauschii
F775_14780
I
0.914
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.914
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.914
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.914
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.914
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.914
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.914
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.914
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.914
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.914
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.914
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.914
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.914
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.914
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.914
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.914
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.914
OBART01G42600
Oryza barthii
OBART01G42600
I
0.914
OBART11G15260
Oryza barthii
OBART11G15260
I
0.914
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.914
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.914
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.914
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.914
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.914
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.914
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.914
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.914
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.914
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.914
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.914
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.914
OS01G0928000
Oryza sativa
OS01G0928000
I
0.914
OS11G0523700
Oryza sativa
OS11G0523700
I
0.914
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.914
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.914
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.914
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.914
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.914
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.914
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.914
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.914
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.914
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.914
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.914
Si001874m.g
Setaria italica
Si001874m.g
I
0.914
Si026212m.g
Setaria italica
Si026212m.g
I
0.914
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.914
TCM_014741
Theobroma cacao
TCM_014741
I
0.914
TCM_017336
Theobroma cacao
TCM_017336
I
0.914
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.914
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.914
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.914
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.914
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.914
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.914
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.914
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.914
Ca_01394
Cicer arietinum
Ca_01394
I
0.914
Cla002682
Citrullus lanatus
Cla002682
I
0.914
Cla003283
Citrullus lanatus
Cla003283
I
0.914
Pm016093
Prunus mume
Pm016093
I
0.914
Pm024587
Prunus mume
Pm024587
I
0.914
30147.m014419
Ricinus communis
30147.m014419
I
0.914
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.914
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.914
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.914
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.914
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.914
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.914
mgf012194m
Mimulus guttatus
mgf012194m
I
0.914
mgf015974m
Mimulus guttatus
mgf015974m
I
0.914
mgf016462m
Mimulus guttatus
mgf016462m
I
0.914
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.914
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.914
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.914
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.914
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.914
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.914
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.914
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.914
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.914
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.914
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.914
MDP0000247912
Malus domestica
MDP0000247912
I
0.914
MDP0000304669
Malus domestica
MDP0000304669
I
0.914
MDP0000662999
Malus domestica
MDP0000662999
I
0.914
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.914
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.914
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.914
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.914
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.914
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.914
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.914
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.914
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.914
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.914
PK06940.1
Cannabis sativa
PK06940.1
I
0.914
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.914
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.914
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.903
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.903
Ca_23892
Cicer arietinum
Ca_23892
I
0.903
Pavir.Ha01426
Panicum virgatum
Pavir.Ha01426
I
0.903
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.890
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.890
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.890
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.890
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.890
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.890
MDP0000219146
Malus domestica
MDP0000219146
I
0.890
PK06841.1
Cannabis sativa
PK06841.1
I
0.890
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.890
SCRM2
Arabidopsis lyrata
Al_scaffold_0001_1326
I
0.888
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.887
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.887
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.887
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.887
BRADI4G17460
Brachypodium distachyon
BRADI4G17460
I
0.884
GLYMA05G38530
Glycine max
GLYMA05G38530
I
0.884
PGSC0003DMG401028788
Solanum tuberosum
PGSC0003DMG401028788
I
0.884
Solyc06g068870.2
Solanum lycopersicum
Solyc06g068870.2
I
0.884
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
0.884
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
0.884
Lus10032542.g
Linum usitatissimum
Lus10032542.g
I
0.884
Lus10043199.g
Linum usitatissimum
Lus10043199.g
I
0.884
30131.m006993
Ricinus communis
30131.m006993
I
0.879
cassava7475.valid.m1
Manihot esculenta
cassava7475.valid.m1
I
0.879
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.877
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.877
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.877
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.874
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.874
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.874
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
0.870
SELMODRAFT_16038
Selaginella moellendorffii
SELMODRAFT_16038
I
0.870
SELMODRAFT_16039
Selaginella moellendorffii
SELMODRAFT_16039
I
0.870
SELMODRAFT_430203
Selaginella moellendorffii
SELMODRAFT_430203
I
0.870
SELMODRAFT_451590
Selaginella moellendorffii
SELMODRAFT_451590
I
0.870
Cla016068
Citrullus lanatus
Cla016068
I
0.870
Pm008898
Prunus mume
Pm008898
I
0.870
Cucsa.010660
Cucumis sativus
Cucsa.010660
I
0.870
e_gw1.25.105.1
Physcomitrella patens
e_gw1.25.105.1
I
0.870
estExt_fgenesh1_pg.C_1590022
Physcomitrella patens
estExt_fgenesh1_pg.C_1590022
I
0.870
AMTR_s00096p00160080
Amborella trichopoda
AMTR_s00096p00160080
I
0.869
estExt_gwp_gw1.C_1820005
Physcomitrella patens
estExt_gwp_gw1.C_1820005
I
0.867
fgenesh1_pg.scaffold_1000274
Physcomitrella patens
fgenesh1_pg.scaffold_1000274
I
0.867
AMTR_s00019p00254380
Amborella trichopoda
AMTR_s00019p00254380
I
0.860
BRADI3G01910
Brachypodium distachyon
BRADI3G01910
I
0.860
F775_15875
Aegilops tauschii
F775_15875
I
0.860
GLYMA13G00480
Glycine max
GLYMA13G00480
I
0.860
GLYMA17G06610
Glycine max
GLYMA17G06610
I
0.860
MLOC_52192
Hordeum vulgare
MLOC_52192
I
0.860
Sb04g001650
Sorghum bicolor
Sb04g001650
I
0.860
Traes_4DS_7B0E8D459
Triticum aestivum
Traes_4DS_7B0E8D459
I
0.860
TRIUR3_16046
Triticum urartu
TRIUR3_16046
I
0.860
Cla023112
Citrullus lanatus
Cla023112
I
0.860
Cucsa.088960
Cucumis sativus
Cucsa.088960
I
0.860
Pavir.Ab00204
Panicum virgatum
Pavir.Ab00204
I
0.860
PRUPE_ppa002978mg
Prunus persica
PRUPE_ppa002978mg
I
0.858
GLYMA16G26291
Glycine max
GLYMA16G26291
I
0.857
PGSC0003DMG400008195
Solanum tuberosum
PGSC0003DMG400008195
I
0.857
Si006500m.g
Setaria italica
Si006500m.g
I
0.857
Solyc08g062780.1
Solanum lycopersicum
Solyc08g062780.1
I
0.857
TCM_006602
Theobroma cacao
TCM_006602
I
0.857
Gorai.008G036900
Gossypium raimondii
Gorai.008G036900
I
0.857
PK03241.1
Cannabis sativa
PK03241.1
I
0.857
Bo01390s040
Brassica oleracea
Bo01390s040
I
0.852
Bo5g016490
Brassica oleracea
Bo5g016490
I
0.852
POPTR_0018s13850
Populus trichocarpa
POPTR_0018s13850
I
0.850
SapurV1A.0140s0240
Salix purpurea
SapurV1A.0140s0240
I
0.850
SapurV1A.3355s0010
Salix purpurea
SapurV1A.3355s0010
I
0.850
MLOC_56814
Hordeum vulgare
MLOC_56814
I
0.849
Ciclev10033428m.g
Citrus clementina
Ciclev10033428m.g
I
0.849
orange1.1g041101m.g
Citrus sinensis
orange1.1g041101m.g
I
0.849
AMS
Arabidopsis thaliana
AT2G16910
D
0.847
Bo3g091780
Brassica oleracea
Bo3g091780
I
0.847
Bo7g016210
Brassica oleracea
Bo7g016210
I
0.847
Bra002004
Brassica rapa
Bra002004
I
0.847
Bra013041
Brassica rapa
Bra013041
I
0.847
AMS
Arabidopsis lyrata
fgenesh2_kg.3__3272__AT2G16910.1
I
0.847
GLYMA10G42830
Glycine max
GLYMA10G42830
I
0.847
GLYMA20G24170
Glycine max
GLYMA20G24170
I
0.847
MTR_1g112680
Medicago truncatula
MTR_1g112680
I
0.847
AMS
Populus trichocarpa
POPTR_0009s13860
I
0.847
Ca_05416
Cicer arietinum
Ca_05416
I
0.847
Ca_23693
Cicer arietinum
Ca_23693
I
0.847
Ca_23694
Cicer arietinum
Ca_23694
I
0.847
cassava2551.valid.m1
Manihot esculenta
cassava2551.valid.m1
I
0.847
cassava2552.valid.m1
Manihot esculenta
cassava2552.valid.m1
I
0.847
mgf018455m
Mimulus guttatus
mgf018455m
I
0.847
Bostr.18351s0148
Boechera stricta
Bostr.18351s0148
I
0.847
Cagra.10862s0002
Capsella grandiflora
Cagra.10862s0002
I
0.847
Carubv10016240m.g
Capsella rubella
Carubv10016240m.g
I
0.847
gene23716-v1.0-hybrid
Fragaria vesca
gene23716-v1.0-hybrid
I
0.847
MDP0000405748
Malus domestica
MDP0000405748
I
0.847
SapurV1A.0218s0460
Salix purpurea
SapurV1A.0218s0460
I
0.847
Thhalv10022620m.g
Eutrema salsugineum
Thhalv10022620m.g
I
0.847
LjSGA_106153.1
Lotus japonicus
LjSGA_106153.1
I
0.847
POPTR_0018s13840
Populus trichocarpa
POPTR_0018s13840
I
0.844
SapurV1A.0001s2820
Salix purpurea
SapurV1A.0001s2820
I
0.844
PGSC0003DMG400017440
Solanum tuberosum
PGSC0003DMG400017440
I
0.843
Si006199m.g
Setaria italica
Si006199m.g
I
0.843
Solyc05g014590.2
Solanum lycopersicum
Solyc05g014590.2
I
0.843
GLYMA09G06770
Glycine max
GLYMA09G06770
I
0.840
GLYMA15G18070
Glycine max
GLYMA15G18070
I
0.840
MTR_2g038040
Medicago truncatula
MTR_2g038040
I
0.840
PGSC0003DMG400004087
Solanum tuberosum
PGSC0003DMG400004087
I
0.840
POPTR_0018s13860
Populus trichocarpa
POPTR_0018s13860
I
0.840
Si019518m.g
Setaria italica
Si019518m.g
I
0.840
Solyc07g018010.2
Solanum lycopersicum
Solyc07g018010.2
I
0.840
TCM_039471
Theobroma cacao
TCM_039471
I
0.840
Traes_6AS_4C2F64614
Triticum aestivum
Traes_6AS_4C2F64614
I
0.840
VIT_11s0052g00100
Vitis vinifera
VIT_11s0052g00100
I
0.840
30198.m000869
Ricinus communis
30198.m000869
I
0.840
cassava2997.m1
Manihot esculenta
cassava2997.m1
I
0.840
mgf024029m
Mimulus guttatus
mgf024029m
I
0.840
Aquca_018_00039
Aquilegia coerulea
Aquca_018_00039
I
0.840
Ciclev10009285m.g
Citrus clementina
Ciclev10009285m.g
I
0.840
Eucgr.C02208
Eucalyptus grandis
Eucgr.C02208
I
0.840
gene17273-v1.0-hybrid
Fragaria vesca
gene17273-v1.0-hybrid
I
0.840
Gorai.009G002200
Gossypium raimondii
Gorai.009G002200
I
0.840
Gorai.013G242800
Gossypium raimondii
Gorai.013G242800
I
0.840
Lus10006951.g
Linum usitatissimum
Lus10006951.g
I
0.840
MDP0000133262
Malus domestica
MDP0000133262
I
0.840
MDP0000318229
Malus domestica
MDP0000318229
I
0.840
orange1.1g025665m.g
Citrus sinensis
orange1.1g025665m.g
I
0.840
SapurV1A.0140s0210
Salix purpurea
SapurV1A.0140s0210
I
0.840
Ciclev10033497m.g
Citrus clementina
Ciclev10033497m.g
N
0.738
Traes_3DL_4544FA87D
Triticum aestivum
Traes_3DL_4544FA87D
I
0.469