CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.009G002200
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.009G002200
T050057_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AMS
M09782_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AMS_01
0.851
0.612
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.840
0.571
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.009G002200.1
bHLH
57
105
NSNNILSERNRRKKLNQRLFALRALVPNITKMDKASIIKDAIDYIQQLQ
Gorai.009G002200.2
bHLH
57
105
NSNNILSERNRRKKLNQRLFALRALVPNITKMDKASIIKDAIDYIQQLQ
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
291 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Contig13799.0.0.g59
Oxytricha trifallax
Contig13799.0.0.g59
N
Contig16326.0.g54
Oxytricha trifallax
Contig16326.0.g54
N
Contig978.0.g42
Oxytricha trifallax
Contig978.0.g42
N