CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.013G036400
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.013G036400
T050115_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH
DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.888
0.941
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.888
0.902
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY
RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.888
0.902
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.888
0.902
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.878
0.843
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.878
0.843
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT
ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.878
0.843
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.875
0.922
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC
GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.875
0.922
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.875
0.922
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN
NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.862
0.863
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.862
0.863
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN
NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.855
0.784
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.013G036400.1
bHLH
233
283
ATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQ
Gorai.013G036400.2
bHLH
233
283
ATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQ
Gorai.013G036400.4
bHLH
233
283
ATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQ
Gorai.013G036400.6
bHLH
233
283
ATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQ
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
858 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSAMEG00000000518
Ailuropoda melanoleuca
ENSAMEG00000000518
I
ENSAMEG00000002719
Ailuropoda melanoleuca
ENSAMEG00000002719
I
ENSAMEG00000011648
Ailuropoda melanoleuca
ENSAMEG00000011648
I
Alligator_sinensis_CCG008980.1
Alligator sinensis
Alligator_sinensis_CCG008980.1
I
Alligator_sinensis_CCG015583.1
Alligator sinensis
Alligator_sinensis_CCG015583.1
I
ENSAPLG00000010507
Anas platyrhynchos
ENSAPLG00000010507
I
ENSAPLG00000012713
Anas platyrhynchos
ENSAPLG00000012713
I
ENSAPLG00000015149
Anas platyrhynchos
ENSAPLG00000015149
I
HIVEP3
Anolis carolinensis
ENSACAG00000000262
I
HIVEP1
Anolis carolinensis
ENSACAG00000008494
I
Afo_R013233
Aptenodytes forsteri
Afo_R013233
I
Afo_R014870
Aptenodytes forsteri
Afo_R014870
I
ENSAMXG00000000689
Astyanax mexicanus
ENSAMXG00000000689
I
ENSAMXG00000010476
Astyanax mexicanus
ENSAMXG00000010476
I
ENSAMXG00000017196
Astyanax mexicanus
ENSAMXG00000017196
I
ENSAMXG00000020146
Astyanax mexicanus
ENSAMXG00000020146
I
BGLB001623
Biomphalaria glabrata
BGLB001623
I
BGIBMGA003672
Bombyx mori
BGIBMGA003672
I
ENSBTAP00000001526-D1
Bos grunniens
ENSBTAP00000001526-D1
I
ENSP00000247584-D1
Bos grunniens
ENSP00000247584-D1
I
ENSP00000368698-D1
Bos grunniens
ENSP00000368698-D1
I
HIVEP2
Bos taurus
ENSBTAG00000001146
I
HIVEP1
Bos taurus
ENSBTAG00000001252
I
HIVEP3
Bos taurus
ENSBTAG00000020745
I
Brh_R013004
Buceros rhinoceros
Brh_R013004
I
Brh_R013551
Buceros rhinoceros
Brh_R013551
I
HIVEP1
Callithrix jacchus
ENSCJAG00000005100
I
HIVEP2
Callithrix jacchus
ENSCJAG00000019190
I
Aan_R001556
Calypte anna
Aan_R001556
I
Aan_R009807
Calypte anna
Aan_R009807
I
HIVEP2
Canis familiaris
ENSCAFG00000000300
I
HIVEP3
Canis familiaris
ENSCAFG00000002576
I
HIVEP1
Canis familiaris
ENSCAFG00000009791
I
HIVEP2
Cavia porcellus
ENSCPOG00000005191
I
HIVEP1
Cavia porcellus
ENSCPOG00000007524
I
ENSCPOG00000014328
Cavia porcellus
ENSCPOG00000014328
I
Cmyd_10012369
Chelonia mydas
Cmyd_10012369
I
Cmyd_10012979
Chelonia mydas
Cmyd_10012979
I
ENSCSAG00000001159
Chlorocebus sabaeus
ENSCSAG00000001159
I
ENSCSAG00000007502
Chlorocebus sabaeus
ENSCSAG00000007502
I
ENSCSAG00000017065
Chlorocebus sabaeus
ENSCSAG00000017065
I
hivep2b
Danio rerio
ENSDARG00000018773
I
hivep3b
Danio rerio
ENSDARG00000037154
I
hivep2a
Danio rerio
ENSDARG00000039987
I
hivep3a
Danio rerio
ENSDARG00000075928
I
hivep1
Danio rerio
ENSDARG00000103658
I
HIVEP1
Dasypus novemcinctus
ENSDNOG00000036467
I
HIVEP3
Dasypus novemcinctus
ENSDNOG00000043199
I
HIVEP2
Dasypus novemcinctus
ENSDNOG00000049597
I
Hivep2
Dipodomys ordii
ENSDORG00000004767
I
Hivep1
Dipodomys ordii
ENSDORG00000012154
I
HIVEP1
Echinops telfairi
ENSETEG00000015103
I
HIVEP2
Equus caballus
ENSECAG00000009836
I
HIVEP1
Equus caballus
ENSECAG00000010759
I
HIVEP3
Equus caballus
ENSECAG00000018490
I
HIVEP1
Erinaceus europaeus
ENSEEUG00000008935
I
HIVEP2
Erinaceus europaeus
ENSEEUG00000013365
I
HIVEP1
Felis catus
ENSFCAG00000002227
I
HIVEP3
Felis catus
ENSFCAG00000014035
I
HIVEP2
Felis catus
ENSFCAG00000030851
I
ENSFALG00000001148
Ficedula albicollis
ENSFALG00000001148
I
ENSFALG00000012744
Ficedula albicollis
ENSFALG00000012744
I
ENSGMOG00000003043
Gadus morhua
ENSGMOG00000003043
I
ENSGMOG00000011398
Gadus morhua
ENSGMOG00000011398
I
ENSGMOG00000012811
Gadus morhua
ENSGMOG00000012811
I
HIVEP1
Gallus gallus
ENSGALG00000012739
I
HIVEP2
Gallus gallus
ENSGALG00000013795
I
HIVEP3
Gallus gallus
ENSGALG00000027365
I
hivep1
Gasterosteus aculeatus
ENSGACG00000002352
I
hivep2b
Gasterosteus aculeatus
ENSGACG00000011743
I
hivep2a
Gasterosteus aculeatus
ENSGACG00000011974
I
Gfo_R000665
Geospiza fortis
Gfo_R000665
I
Gfo_R003803
Geospiza fortis
Gfo_R003803
I
HIVEP1
Gorilla gorilla
ENSGGOG00000016169
I
HIVEP2
Gorilla gorilla
ENSGGOG00000016466
I
HIVEP3
Gorilla gorilla
ENSGGOG00000016974
I
HIVEP2
Homo sapiens
ENSG00000010818
D
HIVEP1
Homo sapiens
ENSG00000095951
I
HIVEP3
Homo sapiens
ENSG00000127124
I
ENSSTOG00000025109
Ictidomys tridecemlineatus
ENSSTOG00000025109
I
ENSSTOG00000028355
Ictidomys tridecemlineatus
ENSSTOG00000028355
I
ENSLACG00000006616
Latimeria chalumnae
ENSLACG00000006616
I
ENSLACG00000016032
Latimeria chalumnae
ENSLACG00000016032
I
ENSLACG00000016748
Latimeria chalumnae
ENSLACG00000016748
I
ENSLOCG00000000567
Lepisosteus oculatus
ENSLOCG00000000567
I
ENSLOCG00000003625
Lepisosteus oculatus
ENSLOCG00000003625
I
ENSLOCG00000007963
Lepisosteus oculatus
ENSLOCG00000007963
I
HIVEP2
Loxodonta africana
ENSLAFG00000009644
I
HIVEP3
Loxodonta africana
ENSLAFG00000017582
I
ENSP00000012134
Macaca fascicularis
ENSP00000012134
I
ENSP00000361664
Macaca fascicularis
ENSP00000361664
I
ENSP00000368698
Macaca fascicularis
ENSP00000368698
I
HIVEP2
Macaca mulatta
ENSMMUG00000007998
I
HIVEP3
Macaca mulatta
ENSMMUG00000016215
I
ENSMEUG00000003500
Macropus eugenii
ENSMEUG00000003500
I
ENSMEUG00000014160
Macropus eugenii
ENSMEUG00000014160
I
HIVEP3
Meleagris gallopavo
ENSMGAG00000000881
I
HIVEP1
Meleagris gallopavo
ENSMGAG00000003391
I
HIVEP2
Meleagris gallopavo
ENSMGAG00000012956
I
ENSMICG00000008358
Microcebus murinus
ENSMICG00000008358
I
ENSMICG00000010424
Microcebus murinus
ENSMICG00000010424
I
ENSMICG00000016732
Microcebus murinus
ENSMICG00000016732
I
HIVEP1
Monodelphis domestica
ENSMODG00000010547
I
HIVEP2
Monodelphis domestica
ENSMODG00000017268
I
HIVEP3
Monodelphis domestica
ENSMODG00000017330
I
ENSMPUG00000000674
Mustela putorius furo
ENSMPUG00000000674
I
ENSMPUG00000014066
Mustela putorius furo
ENSMPUG00000014066
I
Hivep2
Mus musculus
ENSMUSG00000015501
I
Hivep1
Mus musculus
ENSMUSG00000021366
I
Hivep3
Mus musculus
ENSMUSG00000028634
I
Myotis_brandtii_HIVEP1_10025408
Myotis brandtii
Myotis_brandtii_HIVEP1_10025408
I
Myotis_brandtii_HIVEP2_10035753
Myotis brandtii
Myotis_brandtii_HIVEP2_10035753
I
Myotis_brandtii_HIVEP3_10016763
Myotis brandtii
Myotis_brandtii_HIVEP3_10016763
I
HIVEP2
Myotis lucifugus
ENSMLUG00000001764
I
HIVEP3
Myotis lucifugus
ENSMLUG00000004675
I
HIVEP1
Myotis lucifugus
ENSMLUG00000016059
I
ENSNLEG00000000728
Nomascus leucogenys
ENSNLEG00000000728
I
ENSNLEG00000012279
Nomascus leucogenys
ENSNLEG00000012279
I
ENSNLEG00000015066
Nomascus leucogenys
ENSNLEG00000015066
I
HIVEP1
Ochotona princeps
ENSOPRG00000008394
I
HIVEP2
Ochotona princeps
ENSOPRG00000015623
I
Ogr06337
Ophisaurus gracilis
Ogr06337
I
Ogr11119
Ophisaurus gracilis
Ogr11119
I
ENSONIG00000000567
Oreochromis niloticus
ENSONIG00000000567
I
ENSONIG00000006743
Oreochromis niloticus
ENSONIG00000006743
I
ENSONIG00000013692
Oreochromis niloticus
ENSONIG00000013692
I
ENSONIG00000018691
Oreochromis niloticus
ENSONIG00000018691
I
HIVEP1
Ornithorhynchus anatinus
ENSOANG00000007196
I
HIVEP2
Ornithorhynchus anatinus
ENSOANG00000007666
I
HIVEP3
Oryctolagus cuniculus
ENSOCUG00000001203
I
HIVEP2
Oryctolagus cuniculus
ENSOCUG00000005139
I
HIVEP1
Oryctolagus cuniculus
ENSOCUG00000012379
I
hivep2b
Oryzias latipes
ENSORLG00000008843
I
hivep1
Oryzias latipes
ENSORLG00000009270
I
hivep2a
Oryzias latipes
ENSORLG00000018133
I
HIVEP1
Otolemur garnettii
ENSOGAG00000012509
I
HIVEP2
Otolemur garnettii
ENSOGAG00000017073
I
HIVEP3
Otolemur garnettii
ENSOGAG00000028118
I
ENSOARG00000001505
Ovis aries
ENSOARG00000001505
I
ENSOARG00000014356
Ovis aries
ENSOARG00000014356
I
ENSOARG00000020378
Ovis aries
ENSOARG00000020378
I
HIVEP3
Pan troglodytes
ENSPTRG00000000603
I
HIVEP1
Pan troglodytes
ENSPTRG00000017729
I
HIVEP2
Pan troglodytes
ENSPTRG00000018665
I
ENSPANG00000000913
Papio anubis
ENSPANG00000000913
I
ENSPANG00000010311
Papio anubis
ENSPANG00000010311
I
ENSPANG00000026003
Papio anubis
ENSPANG00000026003
I
ENSPSIG00000004550
Pelodiscus sinensis
ENSPSIG00000004550
I
ENSPSIG00000009360
Pelodiscus sinensis
ENSPSIG00000009360
I
ENSPSIG00000016202
Pelodiscus sinensis
ENSPSIG00000016202
I
ENSPMAG00000003790
Petromyzon marinus
ENSPMAG00000003790
I
ENSPFOG00000005423
Poecilia formosa
ENSPFOG00000005423
I
ENSPFOG00000009215
Poecilia formosa
ENSPFOG00000009215
I
ENSPFOG00000016130
Poecilia formosa
ENSPFOG00000016130
I
ENSPFOG00000016971
Poecilia formosa
ENSPFOG00000016971
I
Pvit_07058
Pogona vitticeps
Pvit_07058
I
Pvit_17261
Pogona vitticeps
Pvit_17261
I
Pvit_18524
Pogona vitticeps
Pvit_18524
I
ENSPPYG00000001475
Pongo abelii
ENSPPYG00000001475
I
ENSPPYG00000016236
Pongo abelii
ENSPPYG00000016236
I
ENSPPYG00000017057
Pongo abelii
ENSPPYG00000017057
I
HIVEP2
Procavia capensis
ENSPCAG00000007184
I
HIVEP3
Pteropus vampyrus
ENSPVAG00000006103
I
HIVEP2
Pteropus vampyrus
ENSPVAG00000012091
I
HIVEP1
Pteropus vampyrus
ENSPVAG00000014003
I
Hivep3
Rattus norvegicus
ENSRNOG00000009341
I
Hivep2
Rattus norvegicus
ENSRNOG00000011015
I
ENSSHAG00000006346
Sarcophilus harrisii
ENSSHAG00000006346
I
ENSSHAG00000008159
Sarcophilus harrisii
ENSSHAG00000008159
I
ENSSHAG00000015534
Sarcophilus harrisii
ENSSHAG00000015534
I
HIVEP1
Sorex araneus
ENSSARG00000006713
I
HIVEP1
Sus scrofa
ENSSSCG00000001049
I
HIVEP2
Sus scrofa
ENSSSCG00000004138
I
ENSTGUG00000005813
Taeniopygia guttata
ENSTGUG00000005813
I
HIVEP2
Taeniopygia guttata
ENSTGUG00000010974
I
hivep2b
Takifugu rubripes
ENSTRUG00000007039
I
hivep1
Takifugu rubripes
ENSTRUG00000010871
I
hivep3b
Takifugu rubripes
ENSTRUG00000013983
I
hivep2a
Takifugu rubripes
ENSTRUG00000015889
I
ENSTSYG00000001970
Tarsius syrichta
ENSTSYG00000001970
I
ENSTSYG00000014008
Tarsius syrichta
ENSTSYG00000014008
I
hivep1
Tetraodon nigroviridis
ENSTNIG00000004491
I
hivep3b
Tetraodon nigroviridis
ENSTNIG00000009667
I
hivep2a
Tetraodon nigroviridis
ENSTNIG00000010718
I
hivep2b
Tetraodon nigroviridis
ENSTNIG00000019322
I
HIVEP3
Tursiops truncatus
ENSTTRG00000005582
I
HIVEP2
Tursiops truncatus
ENSTTRG00000015014
I
HIVEP1
Tursiops truncatus
ENSTTRG00000016828
I
Tal_R003271
Tyto alba
Tal_R003271
I
Tal_R004673
Tyto alba
Tal_R004673
I
ENSVPAG00000003809
Vicugna pacos
ENSVPAG00000003809
I
hivep1.S
Xenopus laevis
XB-GENE-865233
I
hivep1
Xenopus tropicalis
XB-GENE-479002
I
hivep3
Xenopus tropicalis
XB-GENE-482557
I
hivep2
Xenopus tropicalis
XB-GENE-485854
I
ENSXMAG00000010646
Xiphophorus maculatus
ENSXMAG00000010646
I
ENSXMAG00000013507
Xiphophorus maculatus
ENSXMAG00000013507
I
ENSXMAG00000015035
Xiphophorus maculatus
ENSXMAG00000015035
I
ENSXMAG00000016142
Xiphophorus maculatus
ENSXMAG00000016142
I