CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10034358.g
(
Linum usitatissimum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Lus10034358.g
T050273_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.860
0.784
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.860
0.784
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.860
0.784
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.840
0.804
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.840
0.804
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.840
0.804
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.840
0.804
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10034358
bHLH
42
92
YRSKHSETEQRRRCKINERFQILRELIPQNDQKRDKASLLLEVIGYIQFLQ
Links
Other
bHLH
family TFs
Other
Linum usitatissimum
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA08G28010
Glycine max
GLYMA08G28010
I
0.890
GLYMA18G51080
Glycine max
GLYMA18G51080
I
0.890
MTR_5g048350
Medicago truncatula
MTR_5g048350
I
0.890
POPTR_0004s11180
Populus trichocarpa
POPTR_0004s11180
I
0.890
TCM_019015
Theobroma cacao
TCM_019015
I
0.890
BIM3
Vitis vinifera
VIT_14s0083g00930
I
0.890
Ca_22043
Cicer arietinum
Ca_22043
I
0.890
29790.m000843
Ricinus communis
29790.m000843
I
0.890
cassava14.valid.m1
Manihot esculenta
cassava14.valid.m1
I
0.890
cassava15.valid.m1
Manihot esculenta
cassava15.valid.m1
I
0.890
Cucsa.174600
Cucumis sativus
Cucsa.174600
I
0.890
Eucgr.I02069
Eucalyptus grandis
Eucgr.I02069
I
0.890
Gorai.001G197500
Gossypium raimondii
Gorai.001G197500
I
0.890
Lus10004630.g
Linum usitatissimum
Lus10004630.g
I
0.890
Lus10026684.g
Linum usitatissimum
Lus10026684.g
I
0.890
SapurV1A.0274s0040
Salix purpurea
SapurV1A.0274s0040
I
0.890
SapurV1A.2517s0020
Salix purpurea
SapurV1A.2517s0020
I
0.890
Thhalv10027863m.g
Eutrema salsugineum
Thhalv10027863m.g
I
0.890
PK00238.1
Cannabis sativa
PK00238.1
I
0.890
POPTR_0017s13610
Populus trichocarpa
POPTR_0017s13610
I
0.888
Traes_7DL_04FC0BF21
Triticum aestivum
Traes_7DL_04FC0BF21
N
0.885
Aquca_002_00952
Aquilegia coerulea
Aquca_002_00952
I
0.870
Sb07g028860
Sorghum bicolor
Sb07g028860
I
0.868
Si013622m.g
Setaria italica
Si013622m.g
I
0.868
Pavir.Fb01833
Panicum virgatum
Pavir.Fb01833
I
0.868
Pavir.J38910
Panicum virgatum
Pavir.J38910
I
0.868
Ciclev10012135m.g
Citrus clementina
Ciclev10012135m.g
I
0.866
orange1.1g019485m.g
Citrus sinensis
orange1.1g019485m.g
I
0.866
GSMUA_Achr2G05450_001
Musa acuminata
GSMUA_Achr2G05450_001
I
0.864
GSMUA_Achr4G19530_001
Musa acuminata
GSMUA_Achr4G19530_001
I
0.864
GSMUA_Achr9G19110_001
Musa acuminata
GSMUA_Achr9G19110_001
I
0.864
Bostr.17775s0015
Boechera stricta
Bostr.17775s0015
I
0.861
BIM2
Arabidopsis thaliana
AT1G69010
D
0.860
Bo2g062560
Brassica oleracea
Bo2g062560
I
0.860
Bo6g108530
Brassica oleracea
Bo6g108530
I
0.860
Bra004355
Brassica rapa
Bra004355
I
0.860
Bra038332
Brassica rapa
Bra038332
I
0.860
BIM2
Arabidopsis lyrata
fgenesh2_kg.2__1159__AT1G69010.1
I
0.860
GLYMA02G13670
Glycine max
GLYMA02G13670
I
0.860
MTR_7g017320
Medicago truncatula
MTR_7g017320
I
0.860
PGSC0003DMG400001919
Solanum tuberosum
PGSC0003DMG400001919
I
0.860
PGSC0003DMG400019654
Solanum tuberosum
PGSC0003DMG400019654
I
0.860
POPTR_0008s11120
Populus trichocarpa
POPTR_0008s11120
I
0.860
POPTR_0010s14740
Populus trichocarpa
POPTR_0010s14740
I
0.860
PRUPE_ppa008387mg
Prunus persica
PRUPE_ppa008387mg
I
0.860
PRUPE_ppa008856mg
Prunus persica
PRUPE_ppa008856mg
I
0.860
Solyc04g005280.2
Solanum lycopersicum
Solyc04g005280.2
I
0.860
Solyc05g011810.2
Solanum lycopersicum
Solyc05g011810.2
I
0.860
TCM_011433
Theobroma cacao
TCM_011433
I
0.860
BIM2
Vitis vinifera
VIT_01s0010g00540
I
0.860
Cla022382
Citrullus lanatus
Cla022382
I
0.860
30138.m003899
Ricinus communis
30138.m003899
I
0.860
cassava29314.valid.m1
Manihot esculenta
cassava29314.valid.m1
I
0.860
cassava43370.valid.m1
Manihot esculenta
cassava43370.valid.m1
I
0.860
Cucsa.328060
Cucumis sativus
Cucsa.328060
I
0.860
mgf011829m
Mimulus guttatus
mgf011829m
I
0.860
mgf013208m
Mimulus guttatus
mgf013208m
I
0.860
Bostr.10273s0468
Boechera stricta
Bostr.10273s0468
I
0.860
Cagra.1157s0023
Capsella grandiflora
Cagra.1157s0023
I
0.860
Carubv10020679m.g
Capsella rubella
Carubv10020679m.g
I
0.860
Ciclev10032020m.g
Citrus clementina
Ciclev10032020m.g
I
0.860
Eucgr.B03113
Eucalyptus grandis
Eucgr.B03113
I
0.860
gene04534-v1.0-hybrid
Fragaria vesca
gene04534-v1.0-hybrid
I
0.860
Gorai.009G327300
Gossypium raimondii
Gorai.009G327300
I
0.860
Gorai.013G098000
Gossypium raimondii
Gorai.013G098000
I
0.860
MDP0000261293
Malus domestica
MDP0000261293
I
0.860
orange1.1g019960m.g
Citrus sinensis
orange1.1g019960m.g
I
0.860
SapurV1A.0084s0570
Salix purpurea
SapurV1A.0084s0570
I
0.860
Thhalv10018889m.g
Eutrema salsugineum
Thhalv10018889m.g
I
0.860
SapurV1A.0060s0510
Salix purpurea
SapurV1A.0060s0510
I
0.858
PK01364.1
Cannabis sativa
PK01364.1
I
0.858
GLYMA01G09010
Glycine max
GLYMA01G09010
I
0.849
evm.TU.supercontig_289.6
Carica papaya
evm.TU.supercontig_289.6
I
0.847
Lus10005091.g
Linum usitatissimum
Lus10005091.g
N
0.847
GRMZM2G172795
Zea mays
GRMZM2G172795
I
0.841
LPERR04G17400
Leersia perrieri
LPERR04G17400
I
0.841
Sb06g025040
Sorghum bicolor
Sb06g025040
I
0.841
Sb06g025060
Sorghum bicolor
Sb06g025060
I
0.841
Si000845m.g
Setaria italica
Si000845m.g
I
0.841
Si012401m.g
Setaria italica
Si012401m.g
I
0.841
BIM1
Arabidopsis thaliana
AT5G08130
D
0.840
Bo2g161110
Brassica oleracea
Bo2g161110
I
0.840
Bo3g004690
Brassica oleracea
Bo3g004690
I
0.840
Bo5g020460
Brassica oleracea
Bo5g020460
I
0.840
Bo9g174770
Brassica oleracea
Bo9g174770
I
0.840
Bra009322
Brassica rapa
Bra009322
I
0.840
Bra029354
Brassica rapa
Bra029354
I
0.840
GLYMA05G07490
Glycine max
GLYMA05G07490
I
0.840
MTR_4g110040
Medicago truncatula
MTR_4g110040
I
0.840
POPTR_0015s03550
Populus trichocarpa
POPTR_0015s03550
I
0.840
PRUPE_ppa003436mg
Prunus persica
PRUPE_ppa003436mg
I
0.840
BIM1
Arabidopsis lyrata
scaffold_600819.1
I
0.840
Solyc03g114720.2
Solanum lycopersicum
Solyc03g114720.2
I
0.840
Solyc06g069370.2
Solanum lycopersicum
Solyc06g069370.2
I
0.840
TCM_014392
Theobroma cacao
TCM_014392
I
0.840
BIM1
Vitis vinifera
VIT_17s0000g04790
I
0.840
cassava29318.valid.m1
Manihot esculenta
cassava29318.valid.m1
I
0.840
cassava43379.valid.m1
Manihot esculenta
cassava43379.valid.m1
I
0.840
Cucsa.113490
Cucumis sativus
Cucsa.113490
I
0.840
mgf001137m
Mimulus guttatus
mgf001137m
I
0.840
mgf005849m
Mimulus guttatus
mgf005849m
I
0.840
Bostr.13129s0152
Boechera stricta
Bostr.13129s0152
I
0.840
Cagra.1365s0019
Capsella grandiflora
Cagra.1365s0019
I
0.840
Carubv10000655m.g
Capsella rubella
Carubv10000655m.g
I
0.840
Ciclev10020248m.g
Citrus clementina
Ciclev10020248m.g
I
0.840
Eucgr.B00645
Eucalyptus grandis
Eucgr.B00645
I
0.840
evm.TU.supercontig_3.225
Carica papaya
evm.TU.supercontig_3.225
I
0.840
gene26139-v1.0-hybrid
Fragaria vesca
gene26139-v1.0-hybrid
I
0.840
Gorai.007G040600
Gossypium raimondii
Gorai.007G040600
I
0.840
orange1.1g038451m.g
Citrus sinensis
orange1.1g038451m.g
I
0.840
SapurV1A.0178s0150
Salix purpurea
SapurV1A.0178s0150
I
0.840
SapurV1A.0868s0010
Salix purpurea
SapurV1A.0868s0010
I
0.840
Thhalv10013181m.g
Eutrema salsugineum
Thhalv10013181m.g
I
0.840
PK10562.1
Cannabis sativa
PK10562.1
I
0.840