CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g023215m.g
(
Citrus sinensis
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
orange1.1g023215m.g
T050568_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.914
0.941
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.914
0.941
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.873
0.863
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g023215m
bHLH
184
234
ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ
orange1.1g024231m
bHLH
184
234
ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ
orange1.1g025122m
bHLH
184
234
ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ
orange1.1g025407m
bHLH
184
234
ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKQTNTADMLEEAVEYVKFLQ
orange1.1g026394m
bHLH
184
221
ATHPRSIAERVRRTRISDRIRKLQDLVPNMDKVRLVIS
Links
Other
bHLH
family TFs
Other
Citrus sinensis
TFs
169 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29216.m000261
Ricinus communis
29216.m000261
I
0.861
30074.m001421
Ricinus communis
30074.m001421
I
0.858
30149.m000231
Ricinus communis
30149.m000231
I
0.848
30152.m002405
Ricinus communis
30152.m002405
I
0.858
AMTR_s00070p00149100
Amborella trichopoda
AMTR_s00070p00149100
I
0.903
Aquca_009_00280
Aquilegia coerulea
Aquca_009_00280
I
0.861
Aquca_058_00134
Aquilegia coerulea
Aquca_058_00134
I
0.865
AT2G43140
Arabidopsis thaliana
AT2G43140
I
0.845
BGIOSGA008576
Oryza indica
BGIOSGA008576
I
0.845
BGIOSGA028963
Oryza indica
BGIOSGA028963
I
0.873
BGIOSGA031008
Oryza indica
BGIOSGA031008
I
0.873
BHLH80
Arabidopsis thaliana
AT1G35460
D
0.914
BHLH81
Arabidopsis thaliana
AT4G09180
I
0.914
Bo3g036400
Brassica oleracea
Bo3g036400
I
0.845
Bo4g019620
Brassica oleracea
Bo4g019620
I
0.845
Bo5g085170
Brassica oleracea
Bo5g085170
I
0.879
Bo6g043840
Brassica oleracea
Bo6g043840
I
0.914
Bo8g026850
Brassica oleracea
Bo8g026850
I
0.914
Bostr.1774s0027
Boechera stricta
Bostr.1774s0027
I
0.914
Bostr.25463s0393
Boechera stricta
Bostr.25463s0393
I
0.914
Bostr.25993s0461
Boechera stricta
Bostr.25993s0461
I
0.845
Bra000291
Brassica rapa
Bra000291
I
0.845
Bra004748
Brassica rapa
Bra004748
I
0.845
Bra028088
Brassica rapa
Bra028088
I
0.914
Bra034421
Brassica rapa
Bra034421
I
0.879
Bra036760
Brassica rapa
Bra036760
I
0.914
BRADI3G39927
Brachypodium distachyon
BRADI3G39927
I
0.873
Cagra.18223s0002
Capsella grandiflora
Cagra.18223s0002
I
0.914
Cagra.3706s0004
Capsella grandiflora
Cagra.3706s0004
I
0.845
Cagra.9781s0002
Capsella grandiflora
Cagra.9781s0002
I
0.914
Carubv10001721m.g
Capsella rubella
Carubv10001721m.g
I
0.914
Carubv10010050m.g
Capsella rubella
Carubv10010050m.g
I
0.914
Carubv10023683m.g
Capsella rubella
Carubv10023683m.g
I
0.845
cassava13743.valid.m1
Manihot esculenta
cassava13743.valid.m1
I
0.914
cassava2126.valid.m1
Manihot esculenta
cassava2126.valid.m1
I
0.861
cassava29651.valid.m1
Manihot esculenta
cassava29651.valid.m1
I
0.858
cassava30692.valid.m1
Manihot esculenta
cassava30692.valid.m1
I
0.861
cassava35513.valid.m1
Manihot esculenta
cassava35513.valid.m1
I
0.848
cassava35967.valid.m1
Manihot esculenta
cassava35967.valid.m1
I
0.861
cassava44054.valid.m1
Manihot esculenta
cassava44054.valid.m1
I
0.861
Ca_26916
Cicer arietinum
Ca_26916
I
0.840
chr5.LjT42F22.20.nc
Lotus japonicus
chr5.LjT42F22.20.nc
I
0.845
Ciclev10002083m.g
Citrus clementina
Ciclev10002083m.g
I
0.914
Ciclev10005233m.g
Citrus clementina
Ciclev10005233m.g
I
0.861
Cla017792
Citrullus lanatus
Cla017792
I
0.861
Cucsa.061590
Cucumis sativus
Cucsa.061590
I
0.914
Cucsa.242910
Cucumis sativus
Cucsa.242910
I
0.861
Eucgr.A02417
Eucalyptus grandis
Eucgr.A02417
I
0.861
evm.TU.supercontig_84.89
Carica papaya
evm.TU.supercontig_84.89
I
0.861
evm.TU.supercontig_85.115
Carica papaya
evm.TU.supercontig_85.115
I
0.848
e_gw1.34.393.1
Physcomitrella patens
e_gw1.34.393.1
I
0.858
F775_24151
Aegilops tauschii
F775_24151
I
0.873
fgenesh2_kg.4__2475__AT2G43140.1
Arabidopsis lyrata
fgenesh2_kg.4__2475__AT2G43140.1
I
0.845
fgenesh2_kg.6__2924__AT4G09180.1
Arabidopsis lyrata
fgenesh2_kg.6__2924__AT4G09180.1
I
0.914
gene00545-v1.0-hybrid
Fragaria vesca
gene00545-v1.0-hybrid
I
0.861
gene20622-v1.0-hybrid
Fragaria vesca
gene20622-v1.0-hybrid
I
0.861
gene26880-v1.0-hybrid
Fragaria vesca
gene26880-v1.0-hybrid
I
0.914
GLYMA08G26110
Glycine max
GLYMA08G26110
I
0.914
GLYMA10G12150
Glycine max
GLYMA10G12150
I
0.861
GLYMA20G39220
Glycine max
GLYMA20G39220
I
0.845
Gorai.002G228900
Gossypium raimondii
Gorai.002G228900
I
0.861
Gorai.004G035800
Gossypium raimondii
Gorai.004G035800
I
0.858
Gorai.006G140200
Gossypium raimondii
Gorai.006G140200
I
0.861
Gorai.011G144600
Gossypium raimondii
Gorai.011G144600
I
0.845
Gorai.013G138300
Gossypium raimondii
Gorai.013G138300
I
0.914
GRMZM2G437481
Zea mays
GRMZM2G437481
I
0.845
GSMUA_Achr5G22310_001
Musa acuminata
GSMUA_Achr5G22310_001
I
0.861
GSMUA_Achr7G20490_001
Musa acuminata
GSMUA_Achr7G20490_001
I
0.849
gw1.185.89.1
Physcomitrella patens
gw1.185.89.1
I
0.869
LPERR02G18900
Leersia perrieri
LPERR02G18900
I
0.845
Lus10021023.g
Linum usitatissimum
Lus10021023.g
I
0.861
Lus10031255.g
Linum usitatissimum
Lus10031255.g
I
0.861
Lus10031826.g
Linum usitatissimum
Lus10031826.g
I
0.861
MDP0000180376
Malus domestica
MDP0000180376
I
0.861
MDP0000269890
Malus domestica
MDP0000269890
I
0.914
MDP0000273574
Malus domestica
MDP0000273574
I
0.845
mgf002701m
Mimulus guttatus
mgf002701m
I
0.914
mgf005043m
Mimulus guttatus
mgf005043m
I
0.845
mgf016734m
Mimulus guttatus
mgf016734m
I
0.861
MLOC_67834
Hordeum vulgare
MLOC_67834
I
0.873
MTR_3g027650
Medicago truncatula
MTR_3g027650
I
0.848
MTR_3g028520
Medicago truncatula
MTR_3g028520
I
0.848
MTR_4g033295
Medicago truncatula
MTR_4g033295
I
0.888
OB02G30670
Oryza brachyantha
OB02G30670
I
0.845
OB08G26810
Oryza brachyantha
OB08G26810
I
0.873
OBART02G23210
Oryza barthii
OBART02G23210
I
0.845
OBART08G19860
Oryza barthii
OBART08G19860
I
0.873
OBART09G14660
Oryza barthii
OBART09G14660
I
0.873
OGLUM08G21000
Oryza glumaepatula
OGLUM08G21000
I
0.873
OGLUM09G15300
Oryza glumaepatula
OGLUM09G15300
I
0.873
OLONG_009256
Oryza longistaminata
OLONG_009256
I
0.845
OLONG_017566
Oryza longistaminata
OLONG_017566
I
0.873
OMERI02G22740
Oryza meridionalis
OMERI02G22740
I
0.845
OMERI08G16700
Oryza meridionalis
OMERI08G16700
I
0.873
OMERI09G11370
Oryza meridionalis
OMERI09G11370
I
0.873
ONIVA02G26110
Oryza nivara
ONIVA02G26110
I
0.845
ONIVA08G17500
Oryza nivara
ONIVA08G17500
I
0.873
ONIVA08G22410
Oryza nivara
ONIVA08G22410
I
0.873
OPUNC02G21170
Oryza punctata
OPUNC02G21170
I
0.845
OPUNC08G18020
Oryza punctata
OPUNC08G18020
I
0.873
OPUNC09G13060
Oryza punctata
OPUNC09G13060
I
0.873
orange1.1g018007m.g
Citrus sinensis
orange1.1g018007m.g
I
0.861
ORGLA02G0200100
Oryza glaberrima
ORGLA02G0200100
I
0.845
ORGLA08G0174800
Oryza glaberrima
ORGLA08G0174800
I
0.873
ORGLA09G0112900
Oryza glaberrima
ORGLA09G0112900
I
0.873
ORUFI02G24640
Oryza rufipogon
ORUFI02G24640
I
0.845
ORUFI08G22260
Oryza rufipogon
ORUFI08G22260
I
0.873
ORUFI09G15820
Oryza rufipogon
ORUFI09G15820
I
0.873
OS08G0506700
Oryza sativa
OS08G0506700
D
0.873
OS09G0487900
Oryza sativa
OS09G0487900
I
0.873
Pavir.Ab02229
Panicum virgatum
Pavir.Ab02229
I
0.845
Pavir.Ga01365
Panicum virgatum
Pavir.Ga01365
I
0.845
Pavir.Gb01377
Panicum virgatum
Pavir.Gb01377
I
0.845
Pavir.J08536
Panicum virgatum
Pavir.J08536
I
0.845
PDK_20s1391471g001
Phoenix dactylifera
PDK_20s1391471g001
I
0.861
PDK_20s1484071g001
Phoenix dactylifera
PDK_20s1484071g001
I
0.858
PDK_20s1630671g001
Phoenix dactylifera
PDK_20s1630671g001
I
0.858
PGSC0003DMG400006569
Solanum tuberosum
PGSC0003DMG400006569
I
0.845
PGSC0003DMG400008153
Solanum tuberosum
PGSC0003DMG400008153
I
0.861
PGSC0003DMG400022058
Solanum tuberosum
PGSC0003DMG400022058
I
0.857
PGSC0003DMG400025263
Solanum tuberosum
PGSC0003DMG400025263
I
0.858
PGSC0003DMG400031314
Solanum tuberosum
PGSC0003DMG400031314
I
0.914
PK06301.1
Cannabis sativa
PK06301.1
I
0.914
PK07850.1
Cannabis sativa
PK07850.1
I
0.845
PK18038.1
Cannabis sativa
PK18038.1
I
0.861
Pm000447
Prunus mume
Pm000447
I
0.861
Pm004181
Prunus mume
Pm004181
I
0.914
Pm007619
Prunus mume
Pm007619
I
0.845
Pm025821
Prunus mume
Pm025821
I
0.861
POPTR_0006s05640
Populus trichocarpa
POPTR_0006s05640
I
0.861
POPTR_0009s06910
Populus trichocarpa
POPTR_0009s06910
I
0.858
POPTR_0016s05100
Populus trichocarpa
POPTR_0016s05100
I
0.861
PRUPE_ppa006295mg
Prunus persica
PRUPE_ppa006295mg
I
0.861
PRUPE_ppa011017mg
Prunus persica
PRUPE_ppa011017mg
I
0.914
PRUPE_ppa019977mg
Prunus persica
PRUPE_ppa019977mg
I
0.861
PRUPE_ppa025178mg
Prunus persica
PRUPE_ppa025178mg
I
0.845
SapurV1A.0018s0320
Salix purpurea
SapurV1A.0018s0320
I
0.861
SapurV1A.0071s0010
Salix purpurea
SapurV1A.0071s0010
I
0.845
SapurV1A.0111s0030
Salix purpurea
SapurV1A.0111s0030
I
0.846
SapurV1A.0133s0050
Salix purpurea
SapurV1A.0133s0050
I
0.861
SapurV1A.0391s0050
Salix purpurea
SapurV1A.0391s0050
I
0.914
SapurV1A.0402s0180
Salix purpurea
SapurV1A.0402s0180
I
0.845
SapurV1A.0529s0060
Salix purpurea
SapurV1A.0529s0060
I
0.845
SapurV1A.0690s0120
Salix purpurea
SapurV1A.0690s0120
I
0.914
SapurV1A.1647s0020
Salix purpurea
SapurV1A.1647s0020
I
0.914
SapurV1A.1898s0040
Salix purpurea
SapurV1A.1898s0040
I
0.846
Sb04g025260
Sorghum bicolor
Sb04g025260
I
0.845
Sb06g020810
Sorghum bicolor
Sb06g020810
I
0.845
scaffold_103992.1
Arabidopsis lyrata
scaffold_103992.1
I
0.914
Si010513m.g
Setaria italica
Si010513m.g
I
0.845
Solyc01g086870.2
Solanum lycopersicum
Solyc01g086870.2
I
0.858
Solyc06g065040.2
Solanum lycopersicum
Solyc06g065040.2
I
0.914
Solyc09g098110.2
Solanum lycopersicum
Solyc09g098110.2
I
0.845
Solyc10g079050.1
Solanum lycopersicum
Solyc10g079050.1
I
0.861
Solyc11g056650.1
Solanum lycopersicum
Solyc11g056650.1
I
0.857
TCM_005925
Theobroma cacao
TCM_005925
I
0.858
TCM_020066
Theobroma cacao
TCM_020066
I
0.845
TCM_024842
Theobroma cacao
TCM_024842
I
0.861
TCM_036484
Theobroma cacao
TCM_036484
I
0.914
Thhalv10016998m.g
Eutrema salsugineum
Thhalv10016998m.g
I
0.845
Thhalv10028883m.g
Eutrema salsugineum
Thhalv10028883m.g
I
0.914
Traes_7AS_4FAB72487
Triticum aestivum
Traes_7AS_4FAB72487
I
0.873
Traes_7DS_B671A4EAD
Triticum aestivum
Traes_7DS_B671A4EAD
I
0.873
TRIUR3_26625
Triticum urartu
TRIUR3_26625
I
0.873
VIT_05s0124g00240
Vitis vinifera
VIT_05s0124g00240
I
0.845
VIT_08s0007g07810
Vitis vinifera
VIT_08s0007g07810
I
0.861
VIT_13s0064g01290
Vitis vinifera
VIT_13s0064g01290
I
0.858
VIT_18s0041g00690
Vitis vinifera
VIT_18s0041g00690
I
0.914